| | Correspondence Authors' Reply Hung D Nguyen, Maki Yoshihama, and Naoya Kenmochi PMCID: PMC1523297 On the Estimation of Intron Evolution Miklós Csűrös PMCID: PMC1523298 Review From Functional Genomics to Functional Immunomics: New Challenges, Old Problems, Big Rewards Ulisses M Braga-Neto and Ernesto T. A Marques, Jr PMCID: PMC1523295 Research Articles Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C Doyle, Irina Grigorova, Carol A Gross, and Mustafa Khammash PMCID: PMC1523291 Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles Markus J Herrgård, Stephen S Fong, and Bernhard Ø Palsson PMCID: PMC1487183 Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, and Yi-Xue Li PMCID: PMC1487180 Single-Molecule Dynamics Reveals Cooperative Binding-Folding in Protein Recognition Jin Wang, Qiang Lu, and H. Peter Lu PMCID: PMC1487182 Protein–Protein Interactions More Conserved within Species than across Species Sven Mika and Burkhard Rost PMCID: PMC1513270 Key Role of Local Regulation in Chemosensing Revealed by a New Molecular Interaction-Based Modeling Method Martin Meier-Schellersheim, Xuehua Xu, Bastian Angermann, Eric J Kunkel, Tian Jin, and Ronald N Germain PMCID: PMC1513273 Emergence of Protein Fold Families through Rational Design Feng Ding and Nikolay V Dokholyan PMCID: PMC1487181 Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes Jennifer L Kabat, Sergio Barberan-Soler, Paul McKenna, Hiram Clawson, Tracy Farrer, and Alan M Zahler PMCID: PMC1500816 Evolutionary and Physiological Importance of Hub Proteins Nizar N Batada, Laurence D Hurst, and Mike Tyers PMCID: PMC1500817 Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms Brynn H Voy, Jon A Scharff, Andy D Perkins, Arnold M Saxton, Bhavesh Borate, Elissa J Chesler, Lisa K Branstetter, and Michael A Langston PMCID: PMC1513268 Wiggle—Predicting Functionally Flexible Regions from Primary Sequence Jenny Gu, Michael Gribskov, and Philip E Bourne PMCID: PMC1500818 Toward a Census of Bacteria in Soil Patrick D Schloss and Jo Handelsman PMCID: PMC1513271 Complex Parameter Landscape for a Complex Neuron Model Pablo Achard and Erik De Schutter PMCID: PMC1513272 Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems Marcus Kaiser and Claus C Hilgetag PMCID: PMC1513269 Circadian Rhythmicity by Autocatalysis Arun Mehra, Christian I Hong, Mi Shi, Jennifer J Loros, Jay C Dunlap, and Peter Ruoff PMCID: PMC1523307 Molecular Simulations of Cotranslational Protein Folding: Fragment Stabilities, Folding Cooperativity, and Trapping in the Ribosome Adrian H Elcock PMCID: PMC1523309 Correction Correction: How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory? Vitaly V Ganusov, Sergei S Pilyugin, Rafi Ahmed, and Rustom Antia PMCID: PMC1523308 Corrects: Vitaly V Ganusov, et al. How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory? PLoS Comput Biol. 2006 June; 2(6): e55. |
