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Volume 100(23);  November 11, 2003
Editorial
Biographies of newly elected Academy members
Nicholas R. Cozzarelli, Kenneth R. Fulton, Diane M. Sullenberger, and Bridget C. Coughlin
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13117. Published online 2003 November 3. doi: 10.1073/pnas.2536811100.
PMCID: PMC263723
Commentaries
Histone modifications: Now summoning sumoylation
Dafna Nathan, David E. Sterner, and Shelley L. Berger
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13118–13120. Published online 2003 November 3. doi: 10.1073/pnas.2436173100.
PMCID: PMC263724
Cytochrome P450 flexibility
Thomas L. Poulos
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13121–13122. Published online 2003 November 3. doi: 10.1073/pnas.2336095100.
PMCID: PMC263725
Similar neural mechanisms for emotion-induced memory impairment and enhancement
Larry Cahill
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13123–13124. Published online 2003 November 4. doi: 10.1073/pnas.2335833100.
PMCID: PMC263726
Biography
Biography of John Bongaarts
Christen Brownlee
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13125–13126. Published online 2003 November 3. doi: 10.1073/pnas.2536633100.
PMCID: PMC263727
Physical Sciences
Applied Mathematics
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
Iman Famili, Jochen Förster, Jens Nielsen, and Bernhard O. Palsson
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13134–13139. Published online 2003 October 24. doi: 10.1073/pnas.2235812100.
PMCID: PMC263729
Chemistry
De novo designed cyclic-peptide heme complexes
Michael M. Rosenblatt, Jiangyun Wang, and Kenneth S. Suslick
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13140–13145. Published online 2003 October 31. doi: 10.1073/pnas.2231273100.
PMCID: PMC263730
Revealing competitive Förster-type resonance energy-transfer pathways in single bichromophoric molecules
Johan Hofkens, Mircea Cotlet, Tom Vosch, Philip Tinnefeld, Kenneth D. Weston, Christophe Ego, Andrew Grimsdale, Klaus Müllen, David Beljonne, Jean Luc Brédas, Sven Jordens, Gerd Schweitzer, Markus Sauer, and Frans De Schryver
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13146–13151. Published online 2003 October 28. doi: 10.1073/pnas.2235805100.
PMCID: PMC263731
Engineering
Regulation of CD18 expression on neutrophils in response to fluid shear stress
Shunichi Fukuda and Geert W. Schmid-Schönbein
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13152–13157. Published online 2003 October 31. doi: 10.1073/pnas.2336130100.
PMCID: PMC263732
Geophysics
Contribution of climate-driven change in continental water storage to recent sea-level rise
P. C. D. Milly, A. Cazenave, and C. Gennero
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13158–13161. Published online 2003 October 23. doi: 10.1073/pnas.2134014100.
PMCID: PMC263733
Physics
Boundary of quantum evolution under decoherence
Navin Khaneja, Burkhard Luy, and Steffen J. Glaser
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13162–13166. Published online 2003 October 31. doi: 10.1073/pnas.2134111100.
PMCID: PMC263734
Statistics
Robust singular value decomposition analysis of microarray data
Li Liu, Douglas M. Hawkins, Sujoy Ghosh, and S. Stanley Young
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13167–13172. Published online 2003 October 27. doi: 10.1073/pnas.1733249100.
PMCID: PMC263735
Biological Sciences
Anthropology
The anthropoid status of a primate from the late middle Eocene Pondaung Formation (Central Myanmar): Tarsal evidence
Laurent Marivaux, Yaowalak Chaimanee, Stéphane Ducrocq, Bernard Marandat, Jean Sudre, Aung Naing Soe, Soe Thura Tun, Wanna Htoon, and Jean-Jacques Jaeger
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13173–13178. Published online 2003 October 31. doi: 10.1073/pnas.2332542100.
PMCID: PMC263736
Biochemistry
Aqueous access pathways in subunit a of rotary ATP synthase extend to both sides of the membrane
Christine M. Angevine, Kelly A. G. Herold, and Robert H. Fillingame
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13179–13183. Published online 2003 October 31. doi: 10.1073/pnas.2234364100.
PMCID: PMC263739
Creation of the first anomeric d/l-sugar kinase by means of directed evolution
Dirk Hoffmeister, Jie Yang, Lesley Liu, and Jon S. Thorson
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13184–13189. Published online 2003 October 31.
PMCID: PMC263743
The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
Haitao Yang, Maojun Yang, Yi Ding, Yiwei Liu, Zhiyong Lou, Zhe Zhou, Lei Sun, Lijuan Mo, Sheng Ye, Hai Pang, George F. Gao, Kanchan Anand, Mark Bartlam, Rolf Hilgenfeld, and Zihe Rao
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13190–13195. Published online 2003 October 29. doi: 10.1073/pnas.1835675100.
PMCID: PMC263746
From the Cover:
An open conformation of mammalian cytochrome P450 2B4 at 1.6-Å resolution
Emily E. Scott, You Ai He, Michael R. Wester, Mark A. White, Christopher C. Chin, James R. Halpert, Eric F. Johnson, and C. David Stout
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13196–13201. Published online 2003 October 16. doi: 10.1073/pnas.2133986100.
PMCID: PMC263748
Identification of functional similarities between proteins using directed evolution
Daniel Christ and Greg Winter
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13202–13206. Published online 2003 October 22. doi: 10.1073/pnas.2134365100.
PMCID: PMC263750
The proteome of Saccharomyces cerevisiae mitochondria
Albert Sickmann, Jörg Reinders, Yvonne Wagner, Cornelia Joppich, René Zahedi, Helmut E. Meyer, Birgit Schönfisch, Inge Perschil, Agnieszka Chacinska, Bernard Guiard, Peter Rehling, Nikolaus Pfanner, and Chris Meisinger
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13207–13212. Published online 2003 October 23. doi: 10.1073/pnas.2135385100.
PMCID: PMC263752
A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs
Yong Li and Sidney Altman
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13213–13218. Published online 2003 October 29. doi: 10.1073/pnas.2235589100.
PMCID: PMC263755
Distinct peptide signals in the UmuD and UmuD′ subunits of UmuD/D′ mediate tethering and substrate processing by the ClpXP protease
Saskia B. Neher, Robert T. Sauer, and Tania A. Baker
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13219–13224. Published online 2003 October 31. doi: 10.1073/pnas.2235804100.
PMCID: PMC263758
From the Cover:
Histone sumoylation is associated with transcriptional repression
Yuzuru Shiio and Robert N. Eisenman
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13225–13230. Published online 2003 October 24. doi: 10.1073/pnas.1735528100.
PMCID: PMC263760
SecA-dependent quality control of intracellular protein localization
Markus Eser and Michael Ehrmann
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13231–13234. Published online 2003 November 3. doi: 10.1073/pnas.2234410100.
PMCID: PMC263763
The two rotor components of yeast mitochondrial ATP synthase are mechanically coupled by subunit δ
Stéphane Duvezin-Caubet, Matthieu Caron, Marie-France Giraud, Jean Velours, and Jean-Paul di Rago
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13235–13240. Published online 2003 October 27. doi: 10.1073/pnas.2135169100.
PMCID: PMC263764
DNA replication of mitotic chromatin in Xenopus egg extracts
Tatyana A. Prokhorova, Karen Mowrer, Catherine H. Gilbert, and Johannes C. Walter
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13241–13246. Published online 2003 November 3. doi: 10.1073/pnas.2336104100.
PMCID: PMC263766
Escherichia coli nucleoside diphosphate kinase is a uracil-processing DNA repair nuclease
Edith H. Postel and Bozena M. Abramczyk
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13247–13252. Published online 2003 October 29. doi: 10.1073/pnas.2333230100.
PMCID: PMC263769
Dynamics of the interaction between a fibronectin molecule and a living bacterium under mechanical force
Yasser Bustanji, Carla Renata Arciola, Matteo Conti, Enrico Mandello, Lucio Montanaro, and Bruno Samorí
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13292–13297. Published online 2003 October 22. doi: 10.1073/pnas.1735343100.
PMCID: PMC263788
Biophysics
A comparative study of motor-protein motions by using a simple elastic-network model
Wenjun Zheng and Sebastian Doniach
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13253–13258. Published online 2003 October 29. doi: 10.1073/pnas.2235686100.
PMCID: PMC263771
Motility of Escherichia coli cells in clusters formed by chemotactic aggregation
Nikhil Mittal, Elena O. Budrene, Michael P. Brenner, and Alexander van Oudenaarden
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13259–13263. Published online 2003 November 3. doi: 10.1073/pnas.2233626100.
PMCID: PMC263772
Identification of the protein kinase A regulatory RIα-catalytic subunit interface by amide H/2H exchange and protein docking
Ganesh S. Anand, Dennis Law, Jeffrey G. Mandell, Aaron N. Snead, Igor Tsigelny, Susan S. Taylor, Lynn F. Ten Eyck, and Elizabeth A. Komives
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13264–13269. Published online 2003 October 28. doi: 10.1073/pnas.2232255100.
PMCID: PMC263775
Solution structure of a de novo protein from a designed combinatorial library
Yinan Wei, Seho Kim, David Fela, Jean Baum, and Michael H. Hecht
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13270–13273. Published online 2003 October 30. doi: 10.1073/pnas.1835644100.
PMCID: PMC263778
Exploring the origins of binding specificity through the computational redesign of calmodulin
Julia M. Shifman and Stephen L. Mayo
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13274–13279. Published online 2003 November 3. doi: 10.1073/pnas.2234277100.
PMCID: PMC263780
Trp-cage: Folding free energy landscape in explicit water
Ruhong Zhou
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13280–13285. Published online 2003 October 27. doi: 10.1073/pnas.2233312100.
PMCID: PMC263783
Unifying features in protein-folding mechanisms
Stefano Gianni, Nicholas R. Guydosh, Faaizah Khan, Teresa D. Caldas, Ugo Mayor, George W. N. White, Mari L. DeMarco, Valerie Daggett, and Alan R. Fersht
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13286–13291. Published online 2003 October 31. doi: 10.1073/pnas.1835776100.
PMCID: PMC263785
Dynamics of the interaction between a fibronectin molecule and a living bacterium under mechanical force
Yasser Bustanji, Carla Renata Arciola, Matteo Conti, Enrico Mandello, Lucio Montanaro, and Bruno Samorí
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13292–13297. Published online 2003 October 22. doi: 10.1073/pnas.1735343100.
PMCID: PMC263788
Cell Biology
Src kinase activation by direct interaction with the integrin β cytoplasmic domain
Elena G. Arias-Salgado, Sergio Lizano, Sugata Sarkar, Joan S. Brugge, Mark H. Ginsberg, and Sanford J. Shattil
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13298–13302. Published online 2003 October 30. doi: 10.1073/pnas.2336149100.
PMCID: PMC263791
Rescue of mutants of the tumor suppressor p53 in cancer cells by a designed peptide
Natalia Issaeva, Assaf Friedler, Przemyslaw Bozko, Klas G. Wiman, Alan R. Fersht, and Galina Selivanova
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13303–13307. Published online 2003 October 31. doi: 10.1073/pnas.1835733100.
PMCID: PMC263793
Visualizing the distribution and transport of mRNAs in living cells
Diana P. Bratu, Byeong-Jik Cha, Musa M. Mhlanga, Fred Russell Kramer, and Sanjay Tyagi
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13308–13313. Published online 2003 October 28. doi: 10.1073/pnas.2233244100.
PMCID: PMC263795
A role for Arf1 in mitotic Golgi disassembly, chromosome segregation, and cytokinesis
Nihal Altan-Bonnet, Robert D. Phair, Roman S. Polishchuk, Roberto Weigert, and Jennifer Lippincott-Schwartz
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13314–13319. Published online 2003 October 29. doi: 10.1073/pnas.2234055100.
PMCID: PMC263797
ADP-ribosylation factor 6 regulates insulin secretion through plasma membrane phosphatidylinositol 4,5-bisphosphate
John T. R. Lawrence and Morris J. Birnbaum
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13320–13325. Published online 2003 October 29. doi: 10.1073/pnas.2232129100.
PMCID: PMC263800
NADPH oxidase and extracellular regulated kinases 1/2 are targets of prion protein signaling in neuronal and nonneuronal cells
Benoît Schneider, Vincent Mutel, Mathéa Pietri, Myriam Ermonval, Sophie Mouillet-Richard, and Odile Kellermann
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13326–13331. Published online 2003 November 3. doi: 10.1073/pnas.2235648100.
PMCID: PMC263804
Endosomal compartmentalization in three dimensions: Implications for membrane fusion
J. L. A. N. Murk, B. M. Humbel, U. Ziese, J. M. Griffith, G. Posthuma, J. W. Slot, A. J. Koster, A. J. Verkleij, H. J. Geuze, and M. J. Kleijmeer
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13332–13337. Published online 2003 November 3. doi: 10.1073/pnas.2232379100.
PMCID: PMC263806
Developmental Biology
Posttranscriptional control of the competence factor βFTZ-F1 by juvenile hormone in the mosquito Aedes aegypti
Jinsong Zhu, Li Chen, and Alexander S. Raikhel
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13338–13343. Published online 2003 October 30. doi: 10.1073/pnas.2234416100.
PMCID: PMC263810
From the Cover:
Paternal and maternal genomes confer opposite effects on proliferation, cell-cycle length, senescence, and tumor formation
Lidia Hernandez, Serguei Kozlov, Graziella Piras, and Colin L. Stewart
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13344–13349. Published online 2003 October 27. doi: 10.1073/pnas.2234026100.
PMCID: PMC263813
Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors
Jamie M. Sperger, Xin Chen, Jonathan S. Draper, Jessica E. Antosiewicz, Chris H. Chon, Sunita B. Jones, James D. Brooks, Peter W. Andrews, Patrick O. Brown, and James A. Thomson
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13350–13355. Published online 2003 October 31. doi: 10.1073/pnas.2235735100.
PMCID: PMC263817
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
Veronica F. Hinman, Albert T. Nguyen, R. Andrew Cameron, and Eric H. Davidson
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13356–13361. Published online 2003 October 31. doi: 10.1073/pnas.2235868100.
PMCID: PMC263818
Randomly inserted and targeted Hox/reporter fusions transcriptionally silenced in Polycomb mutants
Wim de Graaff, Daihachiro Tomotsune, Tony Oosterveen, Yoshihiro Takihara, Haruhiko Koseki, and Jacqueline Deschamps
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13362–13367. Published online 2003 October 31. doi: 10.1073/pnas.2237046100.
PMCID: PMC263819
The Drosophila synaptotagmin-like protein bitesize is required for growth and has mRNA localization sequences within its open reading frame
Julia Serano and Gerald M. Rubin
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13368–13373. Published online 2003 October 27. doi: 10.1073/pnas.1835727100.
PMCID: PMC263820
RNA interference-mediated knockdown of a GATA factor reveals a link to anautogeny in the mosquito Aedes aegypti
Geoffrey M. Attardo, Stephen Higgs, Kimberley A. Klingler, Dana L. Vanlandingham, and Alexander S. Raikhel
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13374–13379. Published online 2003 October 31. doi: 10.1073/pnas.2235649100.
PMCID: PMC263821
Ecology
Biomagnification of cyanobacterial neurotoxins and neurodegenerative disease among the Chamorro people of Guam
Paul Alan Cox, Sandra Anne Banack, and Susan J. Murch
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13380–13383. doi: 10.1073/pnas.2235808100.
PMCID: PMC263822
Invasion, competitive dominance, and resource use by exotic and native California grassland species
Eric W. Seabloom, W. Stanley Harpole, O. J. Reichman, and David Tilman
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13384–13389. Published online 2003 October 31. doi: 10.1073/pnas.1835728100.
PMCID: PMC263823
Evolution
Subadult experience influences adult mate choice in an arthropod: Exposed female wolf spiders prefer males of a familiar phenotype
Eileen A. Hebets
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13390–13395. Published online 2003 November 3. doi: 10.1073/pnas.2333262100.
PMCID: PMC263824
Quantitative trait symmetry independent of Hsp90 buffering: Distinct modes of genetic canalization and developmental stability
Claire C. Milton, Brandon Huynh, Philip Batterham, Suzanne L. Rutherford, and Ary A. Hoffmann
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13396–13401. Published online 2003 October 31. doi: 10.1073/pnas.1835613100.
PMCID: PMC263825
Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents
Peter D. Keightley and Daniel J. Gaffney
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13402–13406. Published online 2003 November 3. doi: 10.1073/pnas.2233252100.
PMCID: PMC263826
Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny
León Patricio Martínez-Castilla and Elena R. Alvarez-Buylla
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13407–13412. Published online 2003 November 3. doi: 10.1073/pnas.1835864100.
PMCID: PMC263827
Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene
Francisco Rodríguez-Trelles, Rosa Tarrío, and Francisco J. Ayala
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13413–13417. Published online 2003 October 23. doi: 10.1073/pnas.1835646100.
PMCID: PMC263828
Genetics
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags
Helena Brentani, Otávia L. Caballero, Anamaria A. Camargo, Aline M. da Silva, Wilson Araújo da Silva, Jr., Emmanuel Dias Neto, Marco Grivet, Arthur Gruber, Pedro Edson Moreira Guimaraes, Winston Hide, Christian Iseli, C. Victor Jongeneel, Janet Kelso, Maria Aparecida Nagai, Elida Paula Benquique Ojopi, Elisson C. Osorio, Eduardo M. R. Reis, Gregory J. Riggins, Andrew John George Simpson, Sandro de Souza, Brian J. Stevenson, Robert L. Strausberg, Eloiza H. Tajara, Sergio Verjovski-Almeida, The Human Cancer Genome Project Cancer Genome Anatomy Project Annotation Consortium, and The Human Cancer Genome Project Sequencing Consortium
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13418–13423. Published online 2003 October 30. doi: 10.1073/pnas.1233632100.
PMCID: PMC263829
Loss-of-function mutations in the human GLI2 gene are associated with pituitary anomalies and holoprosencephaly-like features
Erich Roessler, Yang-Zhu Du, Jose L. Mullor, Esther Casas, William P. Allen, Gabriele Gillessen-Kaesbach, Elizabeth R. Roeder, Jeffrey E. Ming, Ariel Ruiz i Altaba, and Maximilian Muenke
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13424–13429. Published online 2003 October 27. doi: 10.1073/pnas.2235734100.
PMCID: PMC263830
Evidence that the bypassing ribosome travels through the coding gap
Jonathan Gallant, Paul Bonthuis, and Dale Lindsley
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13430–13435. Published online 2003 October 23. doi: 10.1073/pnas.2233745100.
PMCID: PMC263831
An endogenous Suppressor of Hairy-wing insulator separates regulatory domains in Drosophila
Timothy J. Parnell, Michaela M. Viering, Astrid Skjesol, Cecilia Helou, Emily J. Kuhn, and Pamela K. Geyer
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13436–13441. Published online 2003 November 3. doi: 10.1073/pnas.2333111100.
PMCID: PMC263832
Multipoint linkage-disequilibrium mapping narrows location interval and identifies mutation heterogeneity
Andrew P. Morris, John C. Whittaker, Chun-Fang Xu, Louise K. Hosking, and David J. Balding
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13442–13446. Published online 2003 November 3. doi: 10.1073/pnas.2235031100.
PMCID: PMC263833
Immunology
Autoimmune cardiomyopathy and heart block develop spontaneously in HLA-DQ8 transgenic IAβ knockout NOD mice
John F. Elliott, Junliang Liu, Zuan-Ning Yuan, Norma Bautista-Lopez, Sarah L. Wallbank, Kunimasa Suzuki, David Rayner, Patrick Nation, Murray A. Robertson, Gang Liu, and Katherine M. Kavanagh
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13447–13452. Published online 2003 October 21. doi: 10.1073/pnas.2235552100.
PMCID: PMC263834
Critical roles for IFN-β in lymphoid development, myelopoiesis, and tumor development: Links to tumor necrosis factor α
Raj Deonarain, Amit Verma, Andrew C. G. Porter, Dirk R. Gewert, Leonidas C. Platanias, and Eleanor N. Fish
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13453–13458. Published online 2003 November 3. doi: 10.1073/pnas.2230460100.
PMCID: PMC263835
Normal B-1a cell development requires B cell-intrinsic NFATc1 activity
Robert Berland and Henry H. Wortis
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13459–13464. Published online 2003 October 31. doi: 10.1073/pnas.2233620100.
PMCID: PMC263836
The T cell receptor β enhancer promotes access and pairing of Dβ and Jβ gene segments during V(D)J recombination
Chun Jeih Ryu, Brian B. Haines, Dobrin D. Draganov, Yun Hee Kang, Charles E. Whitehurst, Tara Schmidt, Hyo Jeong Hong, and Jianzhu Chen
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13465–13470. Published online 2003 October 30. doi: 10.1073/pnas.2235807100.
PMCID: PMC263837
Premature telomeric loss in rheumatoid arthritis is genetically determined and involves both myeloid and lymphoid cell lineages
Stefan O. Schönland, Consuelo Lopez, Thomas Widmann, Julia Zimmer, Ewa Bryl, Jörg J. Goronzy, and Cornelia M. Weyand
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13471–13476. Published online 2003 October 24. doi: 10.1073/pnas.2233561100.
PMCID: PMC263838
Endogenous neosynthesis vs. cross-presentation of viral antigens for cytotoxic T cell priming
Stefan Freigang, Denise Egger, Kurt Bienz, Hans Hengartner, and Rolf M. Zinkernagel
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13477–13482. Published online 2003 October 31. doi: 10.1073/pnas.1835685100.
PMCID: PMC263839
Murine cytomegalovirus m157 mutation and variation leads to immune evasion of natural killer cells
Valentina Voigt, Catherine A. Forbes, Joanne N. Tonkin, Mariapia A. Degli-Esposti, Hamish R. C. Smith, Wayne M. Yokoyama, and Anthony A. Scalzo
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13483–13488. Published online 2003 November 3. doi: 10.1073/pnas.2233572100.
PMCID: PMC263840
The inhibitory potential of Fc receptor homolog 4 on memory B cells
Götz R. A. Ehrhardt, Randall S. Davis, Joyce T. Hsu, Chuen-Miin Leu, Annette Ehrhardt, and Max D. Cooper
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13489–13494. Published online 2003 November 3. doi: 10.1073/pnas.1935944100.
PMCID: PMC263841
Medical Sciences
Regulation of CD18 expression on neutrophils in response to fluid shear stress
Shunichi Fukuda and Geert W. Schmid-Schönbein
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13152–13157. Published online 2003 October 31. doi: 10.1073/pnas.2336130100.
PMCID: PMC263732
From the Cover:
Generation of hair cells by stepwise differentiation of embryonic stem cells
Huawei Li, Graham Roblin, Hong Liu, and Stefan Heller
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13495–13500. Published online 2003 October 30. doi: 10.1073/pnas.2334503100.
PMCID: PMC263842
Pyrin binds the PSTPIP1/CD2BP1 protein, defining familial Mediterranean fever and PAPA syndrome as disorders in the same pathway
Nitza G. Shoham, Michael Centola, Elizabeth Mansfield, Keith M. Hull, Geryl Wood, Carol A. Wise, and Daniel L. Kastner
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13501–13506. Published online 2003 October 31. doi: 10.1073/pnas.2135380100.
PMCID: PMC263843
An experimental platform for studying growth and invasiveness of tumor cells within teratomas derived from human embryonic stem cells
Maty Tzukerman, Tzur Rosenberg, Yael Ravel, Irena Reiter, Raymond Coleman, and Karl Skorecki
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13507–13512. Published online 2003 October 22. doi: 10.1073/pnas.2235551100.
PMCID: PMC263844
A small-molecule antagonist of CXCR4 inhibits intracranial growth of primary brain tumors
Joshua B. Rubin, Andrew L. Kung, Robyn S. Klein, Jennifer A. Chan, YanPing Sun, Karl Schmidt, Mark W. Kieran, Andrew D. Luster, and Rosalind A. Segal
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13513–13518. Published online 2003 October 31. doi: 10.1073/pnas.2235846100.
PMCID: PMC263845
A proatherogenic role for cGMP-dependent protein kinase in vascular smooth muscle cells
Wiebke Wolfsgruber, Susanne Feil, Sabine Brummer, Oliver Kuppinger, Franz Hofmann, and Robert Feil
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13519–13524. Published online 2003 November 3. doi: 10.1073/pnas.1936024100.
PMCID: PMC263846
Disruption of the nonneuronal tph1 gene demonstrates the importance of peripheral serotonin in cardiac function
Francine Côté, Etienne Thévenot, Cécile Fligny, Yves Fromes, Michèle Darmon, Marie-Anne Ripoche, Elisa Bayard, Naima Hanoun, Françoise Saurini, Philippe Lechat, Luisa Dandolo, Michel Hamon, Jacques Mallet, and Guilan Vodjdani
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13525–13530. Published online 2003 November 3. doi: 10.1073/pnas.2233056100.
PMCID: PMC263847
Transdifferentiation of mouse aortic smooth muscle cells to a macrophage-like state after cholesterol loading
James X. Rong, Mark Shapiro, Eugene Trogan, and Edward A. Fisher
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13531–13536. Published online 2003 October 27. doi: 10.1073/pnas.1735526100.
PMCID: PMC263848
Protein profiles associated with survival in lung adenocarcinoma
Guoan Chen, Tarek G Gharib, Hong Wang, Chiang-Ching Huang, Rork Kuick, Dafydd G. Thomas, Kerby A. Shedden, David E. Misek, Jeremy M. G. Taylor, Thomas J. Giordano, Sharon L. R. Kardia, Mark D. Iannettoni, John Yee, Philip J. Hogg, Mark B. Orringer, Samir M. Hanash, and David G. Beer
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13537–13542. Published online 2003 October 22. doi: 10.1073/pnas.2233850100.
PMCID: PMC263849
Id-1 as a molecular target in therapy for breast cancer cell invasion and metastasis
Sylvia Fong, Yoko Itahana, Tomoki Sumida, Jarnail Singh, Jean-Philippe Coppe, Yong Liu, Peter C. Richards, James L. Bennington, Nancy M. Lee, Robert J. Debs, and Pierre-Yves Desprez
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13543–13548. Published online 2003 October 24. doi: 10.1073/pnas.2230238100.
PMCID: PMC263850
Nanoshell-mediated near-infrared thermal therapy of tumors under magnetic resonance guidance
L. R. Hirsch, R. J. Stafford, J. A. Bankson, S. R. Sershen, B. Rivera, R. E. Price, J. D. Hazle, N. J. Halas, and J. L. West
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13549–13554. Published online 2003 November 3. doi: 10.1073/pnas.2232479100.
PMCID: PMC263851
PA-457: A potent HIV inhibitor that disrupts core condensation by targeting a late step in Gag processing
F. Li, R. Goila-Gaur, K. Salzwedel, N. R. Kilgore, M. Reddick, C. Matallana, A. Castillo, D. Zoumplis, D. E. Martin, J. M. Orenstein, G. P. Allaway, E. O. Freed, and C. T. Wild
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13555–13560. Published online 2003 October 22. doi: 10.1073/pnas.2234683100.
PMCID: PMC263852
Identification and characterization of a cyclooxygenase-like enzyme from Entamoeba histolytica
Indranil Dey, Kathy Keller, Adam Belley, and Kris Chadee
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13561–13566. Published online 2003 October 29. doi: 10.1073/pnas.1835863100.
PMCID: PMC263853
Refractory nature of normal human diploid fibroblasts with respect to oncogene-mediated transformation
Tsuyoshi Akagi, Ken Sasai, and Hidesaburo Hanafusa
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13567–13572. Published online 2003 November 3. doi: 10.1073/pnas.1834876100.
PMCID: PMC263854
Differential effects on bone of estrogen receptor α and androgen receptor activation in orchidectomized adult male mice
Sofia Movérare, Katrien Venken, Anna-Lena Eriksson, Niklas Andersson, Stanko Skrtic, Jon Wergedal, Subburaman Mohan, Phil Salmon, Roger Bouillon, Jan-Åke Gustafsson, Dirk Vanderschueren, and Claes Ohlsson
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13573–13578. Published online 2003 October 22. doi: 10.1073/pnas.2233084100.
PMCID: PMC263855
Microbiology
Extensive repetitive DNA facilitates prokaryotic genome plasticity
Rahul A. Aras, Josephine Kang, Ariane I. Tschumi, Yasuaki Harasaki, and Martin J. Blaser
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13579–13584. Published online 2003 October 30. doi: 10.1073/pnas.1735481100.
PMCID: PMC263856
Reevaluation of human cytomegalovirus coding potential
Eain Murphy, Isidore Rigoutsos, Tetsuo Shibuya, and Thomas E. Shenk
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13585–13590. Published online 2003 October 30. doi: 10.1073/pnas.1735466100.
PMCID: PMC263857
Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment
C. O. Jeon, W. Park, P. Padmanabhan, C. DeRito, J. R. Snape, and E. L. Madsen
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13591–13596. Published online 2003 November 3. doi: 10.1073/pnas.1735529100.
PMCID: PMC263858
Multiple oscillators regulate circadian gene expression in Neurospora
Alejandro Correa, Zachary A. Lewis, Andrew V. Greene, Irene J. March, Richard H. Gomer, and Deborah Bell-Pedersen
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13597–13602. Published online 2003 November 3. doi: 10.1073/pnas.2233734100.
PMCID: PMC263859
Spx-dependent global transcriptional control is induced by thiol-specific oxidative stress in Bacillus subtilis
Shunji Nakano, Elke Küster-Schöck, Alan D. Grossman, and Peter Zuber
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13603–13608. Published online 2003 November 3. doi: 10.1073/pnas.2235180100.
PMCID: PMC263860
Neuroscience
Aquaporin-4 square array assembly: Opposing actions of M1 and M23 isoforms
C. Sue Furman, Daniel A. Gorelick-Feldman, Kimberly G. V. Davidson, Thomas Yasumura, John D. Neely, Peter Agre, and John E. Rash
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13609–13614. Published online 2003 November 3. doi: 10.1073/pnas.2235843100.
PMCID: PMC263861
Delayed K+ clearance associated with aquaporin-4 mislocalization: Phenotypic defects in brains of α-syntrophin-null mice
Mahmood Amiry-Moghaddam, Anne Williamson, Maria Palomba, Tore Eid, Nihal C. de Lanerolle, Erlend A. Nagelhus, Marvin E. Adams, Stanley C. Froehner, Peter Agre, and Ole P. Ottersen
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13615–13620. Published online 2003 November 3. doi: 10.1073/pnas.2336064100.
PMCID: PMC263862
Botulinum toxin type B micromechanosensor
W. Liu, Vedrana Montana, Edwin R. Chapman, U. Mohideen, and Vladimir Parpura
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13621–13625. Published online 2003 October 22. doi: 10.1073/pnas.2233819100.
PMCID: PMC263863
From the Cover:
An emotion-induced retrograde amnesia in humans is amygdala- and β-adrenergic-dependent
B. A. Strange, R. Hurlemann, and R. J. Dolan
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13626–13631. Published online 2003 October 31. doi: 10.1073/pnas.1635116100.
PMCID: PMC263864
Inflammation is detrimental for neurogenesis in adult brain
Christine T. Ekdahl, Jan-Hendrik Claasen, Sara Bonde, Zaal Kokaia, and Olle Lindvall
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13632–13637. Published online 2003 October 27. doi: 10.1073/pnas.2234031100.
PMCID: PMC263865
Interaction of sensory responses with spontaneous depolarization in layer 2/3 barrel cortex
Carl C. H. Petersen, Thomas T. G. Hahn, Mayank Mehta, Amiram Grinvald, and Bert Sakmann
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13638–13643. Published online 2003 October 31. doi: 10.1073/pnas.2235811100.
PMCID: PMC263866
Pannexins, a family of gap junction proteins expressed in brain
Roberto Bruzzone, Sheriar G. Hormuzdi, Michael T. Barbe, Anne Herb, and Hannah Monyer
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13644–13649. Published online 2003 November 3. doi: 10.1073/pnas.2233464100.
PMCID: PMC263867
Cyclin-dependent kinase 5 is a mediator of dopaminergic neuron loss in a mouse model of Parkinson's disease
Patrice D. Smith, Stephen J. Crocker, Vernice Jackson-Lewis, Kelly L. Jordan-Sciutto, Shawn Hayley, Matthew P. Mount, Michael J. O'Hare, Steven Callaghan, Ruth S. Slack, Serge Przedborski, Hymie Anisman, and David S. Park
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13650–13655. Published online 2003 October 31. doi: 10.1073/pnas.2232515100.
PMCID: PMC263868
Essential role for RGS9 in opiate action
Venetia Zachariou, Dan Georgescu, Nick Sanchez, Zia Rahman, Ralph DiLeone, Olivier Berton, Rachael L. Neve, Laura J. Sim-Selley, Dana E. Selley, Stephen J. Gold, and Eric J. Nestler
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13656–13661. Published online 2003 October 31. doi: 10.1073/pnas.2232594100.
PMCID: PMC263869
Isorhodopsin rather than rhodopsin mediates rod function in RPE65 knock-out mice
Jie Fan, Baerbel Rohrer, Gennadiy Moiseyev, Jian-xing Ma, and Rosalie K. Crouch
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13662–13667. Published online 2003 October 24. doi: 10.1073/pnas.2234461100.
PMCID: PMC263870
Allosteric modulation of group III metabotropic glutamate receptor 4: A potential approach to Parkinson's disease treatment
Michael J. Marino, David L. Williams, Jr., Julie A. O'Brien, Ornella Valenti, Terrence P. McDonald, Michelle K. Clements, Ruiping Wang, Anthony G. DiLella, J. Fred Hess, Gene G. Kinney, and P. Jeffrey Conn
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13668–13673. Published online 2003 October 30. doi: 10.1073/pnas.1835724100.
PMCID: PMC263871
N-desmethylclozapine, an allosteric agonist at muscarinic 1 receptor, potentiates N-methyl-d-aspartate receptor activity
Cyrille Sur, Pierre J. Mallorga, Marion Wittmann, Marlene A. Jacobson, Danette Pascarella, Jacinta B. Williams, Philip E. Brandish, Douglas J. Pettibone, Edward M. Scolnick, and P. Jeffrey Conn
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13674–13679. Published online 2003 October 31. doi: 10.1073/pnas.1835612100.
PMCID: PMC263872
Axonal transport of eukaryotic translation elongation factor 1α mRNA couples transcription in the nucleus to long-term facilitation at the synapse
Maurizio Giustetto, Ashok N. Hegde, Kausik Si, Andrea Casadio, Kaoru Inokuchi, Wanzheng Pei, Eric R. Kandel, and James H. Schwartz
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13680–13685. Published online 2003 October 24. doi: 10.1073/pnas.1835674100.
PMCID: PMC263873
Pharmacology
Reciprocal modulation of phospholipase Cβ isoforms: Adaptation to chronic morphine
Sumita Chakrabarti, Nai-Jiang Liu, and Alan R. Gintzler
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13686–13691. Published online 2003 November 3. doi: 10.1073/pnas.2335885100.
PMCID: PMC263874
Physiology
The low gonadotropin-independent constitutive production of testicular testosterone is sufficient to maintain spermatogenesis
Fu-Ping Zhang, Tomi Pakarainen, Matti Poutanen, Jorma Toppari, and Ilpo Huhtaniemi
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13692–13697. Published online 2003 October 29. doi: 10.1073/pnas.2232815100.
PMCID: PMC263875
Abnormal osmotic regulation in trpv4-/- mice
Wolfgang Liedtke and Jeffrey M. Friedman
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13698–13703. Published online 2003 October 27. doi: 10.1073/pnas.1735416100.
PMCID: PMC263876
Hyposulfatemia, growth retardation, reduced fertility, and seizures in mice lacking a functional NaSi-1 gene
Paul A. Dawson, Laurent Beck, and Daniel Markovich
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13704–13709. Published online 2003 October 24. doi: 10.1073/pnas.2231298100.
PMCID: PMC263877
A panoramic view of gene expression in the human kidney
Danielle Chabardès-Garonne, Arnaud Méjean, Jean-Christophe Aude, Lydie Cheval, Antonio Di Stefano, Marie-Claude Gaillard, Martine Imbert-Teboul, Monika Wittner, Chanth Balian, Véronique Anthouard, Catherine Robert, Béatrice Ségurens, Patrick Wincker, Jean Weissenbach, Alain Doucet, and Jean-Marc Elalouf
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13710–13715. Published online 2003 October 31. doi: 10.1073/pnas.2234604100.
PMCID: PMC263878
Calcium-dependent molecular spring elements in the giant protein titin
Dietmar Labeit, Kaori Watanabe, Christian Witt, Hideaki Fujita, Yiming Wu, Sunshine Lahmers, Theodor Funck, Siegfried Labeit, and Henk Granzier
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13716–13721. Published online 2003 October 30. doi: 10.1073/pnas.2235652100.
PMCID: PMC263879
Population Biology
Estimating mean lifetime
John Bongaarts and Griffith Feeney
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13127–13133. Published online 2003 September 23. doi: 10.1073/pnas.2035060100.
PMCID: PMC263728
Psychology
Conscious and subliminal conflicts in normal subjects and patients with schizophrenia: The role of the anterior cingulate
Stanislas Dehaene, Eric Artiges, Lionel Naccache, Catherine Martelli, Armelle Viard, Franck Schürhoff, Christophe Recasens, Marie Laure Paillère Martinot, Marion Leboyer, and Jean-Luc Martinot
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13722–13727. Published online 2003 November 3. doi: 10.1073/pnas.2235214100.
PMCID: PMC263880
Neural correlates of training-related memory improvement in adulthood and aging
Lars Nyberg, Johan Sandblom, Sari Jones, Anna Stigsdotter Neely, Karl Magnus Petersson, Martin Ingvar, and Lars Bäckman
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13728–13733. Published online 2003 November 3. doi: 10.1073/pnas.1735487100.
PMCID: PMC263881
Correction
Proc Natl Acad Sci U S A. 2003 November 11; 100(23): 13734–13735. doi: 10.1073/pnas.2336144100.
PMCID: PMC263882
Corrects: Fuqiang Xu, et al. Odor maps of aldehydes and esters revealed by functional MRI in the glomerular layer of the mouse olfactory bulb. Proc Natl Acad Sci U S A. 2003 September 16; 100(19): 11029–11034.
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