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Volume 104(38);  September 18, 2007
This Week in PNAS
In This Issue
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14879–14880. doi: 10.1073/iti3807104.
PMCID: PMC1986578
Commentaries
Targeted cleavage: Tuneable cis-cleaving ribozymes
John J. Rossi
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14881–14882. Published online 2007 September 12. doi: 10.1073/pnas.0707141104.
PMCID: PMC1986579
Water pulls the strings in hydrophobic polymer collapse
Gerhard Hummer
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14883–14884. Published online 2007 September 12. doi: 10.1073/pnas.0706633104.
PMCID: PMC1986580
Coupling of predation intensity and global diversity over geologic time
Steven M. Holland
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14885–14886. Published online 2007 September 12. doi: 10.1073/pnas.0707409104.
PMCID: PMC1986581
Sweet taste signaling in the gut
Anthony Sclafani
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14887–14888. Published online 2007 September 12. doi: 10.1073/pnas.0707410104.
PMCID: PMC1986582
Physical Sciences
Applied Mathematics
On the trend, detrending, and variability of nonlinear and nonstationary time series
Zhaohua Wu, Norden E. Huang, Steven R. Long, and Chung-Kang Peng
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14889–14894. Published online 2007 September 10. doi: 10.1073/pnas.0701020104.
PMCID: PMC1986583
Chemistry
From the Cover:
Energetics of water permeation through fullerene membrane
Hiroyuki Isobe, Tatsuya Homma, and Eiichi Nakamura
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14895–14898. Published online 2007 September 10. doi: 10.1073/pnas.0705010104.
PMCID: PMC1975687
A proposed signaling motif for nuclear import in mRNA processing via the formation of arginine claw
Donald Hamelberg, Tongye Shen, and J. Andrew McCammon
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14947–14951. Published online 2007 September 6. doi: 10.1073/pnas.0703151104.
PMCID: PMC1968059
Geology
Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph
Sky E. Rashby, Alex L. Sessions, Roger E. Summons, and Dianne K. Newman
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15099–15104. Published online 2007 September 11. doi: 10.1073/pnas.0704912104.
PMCID: PMC1986619
Physics
Generalization of distance to higher dimensional objects
Steven S. Plotkin
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14899–14904. Published online 2007 September 11. doi: 10.1073/pnas.0607833104.
PMCID: PMC1986585
Biological Sciences
Biochemistry
A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment
Jacob Bauer, Guangxin Xing, Haruhiko Yagi, Jane M. Sayer, Donald M. Jerina, and Hong Ling
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14905–14910. Published online 2007 September 11. doi: 10.1073/pnas.0700717104.
PMCID: PMC1986586
Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle
Tobias Hainzl, Shenghua Huang, and A. Elisabeth Sauer-Eriksson
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14911–14916. Published online 2007 September 10. doi: 10.1073/pnas.0702467104.
PMCID: PMC1986587
TRRAP and GCN5 are used by c-Myc to activate RNA polymerase III transcription
Niall S. Kenneth, Ben A. Ramsbottom, Natividad Gomez-Roman, Lynne Marshall, Philip A. Cole, and Robert J. White
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14917–14922. Published online 2007 September 11. doi: 10.1073/pnas.0702909104.
PMCID: PMC1986588
Structural insights into the Slit-Robo complex
Cecile Morlot, Nicole M. Thielens, Raimond B. G. Ravelli, Wieger Hemrika, Roland A. Romijn, Piet Gros, Stephen Cusack, and Andrew A. McCarthy
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14923–14928. Published online 2007 September 11. doi: 10.1073/pnas.0705310104.
PMCID: PMC1975871
Tipin is required for stalled replication forks to resume DNA replication after removal of aphidicolin in Xenopus egg extracts
Alessia Errico, Vincenzo Costanzo, and Tim Hunt
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14929–14934. Published online 2007 September 10. doi: 10.1073/pnas.0706347104.
PMCID: PMC1975688
From the Cover:
Targeting the absence: Homozygous DNA deletions as immutable signposts for cancer therapy
Alexander Varshavsky
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14935–14940. Published online 2007 September 10. doi: 10.1073/pnas.0706546104.
PMCID: PMC1986591
Getting specificity from simplicity in putative proteins from the prebiotic Earth
Jaime López de la Osa, David A. Bateman, Sylvia Ho, Carlos González, Avijit Chakrabartty, and Douglas V. Laurents
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14941–14946. Published online 2007 September 12. doi: 10.1073/pnas.0706876104.
PMCID: PMC1986592
Biophysics
Generalization of distance to higher dimensional objects
Steven S. Plotkin
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14899–14904. Published online 2007 September 11. doi: 10.1073/pnas.0607833104.
PMCID: PMC1986585
A proposed signaling motif for nuclear import in mRNA processing via the formation of arginine claw
Donald Hamelberg, Tongye Shen, and J. Andrew McCammon
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14947–14951. Published online 2007 September 6. doi: 10.1073/pnas.0703151104.
PMCID: PMC1968059
Robust protein–protein interactions in crowded cellular environments
Eric J. Deeds, Orr Ashenberg, Jaline Gerardin, and Eugene I. Shakhnovich
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14952–14957. Published online 2007 September 11. doi: 10.1073/pnas.0702766104.
PMCID: PMC1986594
Analysis of ryanodine receptor clusters in rat and human cardiac myocytes
Christian Soeller, David Crossman, Ray Gilbert, and Mark B. Cannell
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14958–14963. Published online 2007 September 11. doi: 10.1073/pnas.0703016104.
PMCID: PMC1986595
Cell Biology
Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA
Lóránt Székvölgyi, Zsuzsa Rákosy, Bálint L. Bálint, Endre Kókai, László Imre, György Vereb, Zsolt Bacsó, Katalin Goda, Sándor Varga, Margit Balázs, Viktor Dombrádi, László Nagy, and Gábor Szabó
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14964–14969. Published online 2007 September 11. doi: 10.1073/pnas.0702269104.
PMCID: PMC1986596
Maintenance of imprinting and nuclear architecture in cycling cells
Kathrin Teller, Irina Solovei, Karin Buiting, Bernhard Horsthemke, and Thomas Cremer
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14970–14975. Published online 2007 September 11. doi: 10.1073/pnas.0704285104.
PMCID: PMC1986597
The Rho GTPase-activating proteins RGA-3 and RGA-4 are required to set the initial size of PAR domains in Caenorhabditis elegans one-cell embryos
Stephanie Schonegg, Alexandru T. Constantinescu, Carsten Hoege, and Anthony A. Hyman
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14976–14981. Published online 2007 September 11. doi: 10.1073/pnas.0706941104.
PMCID: PMC1986598
Inhibition of histone deacetylase activity induces developmental plasticity in oligodendrocyte precursor cells
Costas A. Lyssiotis, John Walker, Chunlei Wu, Toru Kondo, Peter G. Schultz, and Xu Wu
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14982–14987. Published online 2007 September 12. doi: 10.1073/pnas.0707044104.
PMCID: PMC1986599
Epidermal terminal differentiation depends on B lymphocyte-induced maturation protein-1
Erna Magnúsdóttir, Sergey Kalachikov, Koji Mizukoshi, David Savitsky, Akemi Ishida-Yamamoto, Andrey A. Panteleyev, and Kathryn Calame
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14988–14993. Published online 2007 September 10. doi: 10.1073/pnas.0707323104.
PMCID: PMC1986600
Developmental Biology
Correct dosage of Fog2 and Gata4 transcription factors is critical for fetal testis development in mice
Gerrit J. Bouma, Linda L. Washburn, Kenneth H. Albrecht, and Eva M. Eicher
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14994–14999. Published online 2007 September 11. doi: 10.1073/pnas.0701677104.
PMCID: PMC1986601
Proteasomal selection of multiprotein complexes recruited by LIM homeodomain transcription factors
Cenap Güngör, Naoko Taniguchi-Ishigaki, Hong Ma, Alexander Drung, Baris Tursun, Heather P. Ostendorff, Michael Bossenz, Catherina G. Becker, Thomas Becker, and Ingolf Bach
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15000–15005. Published online 2007 September 11. doi: 10.1073/pnas.0703738104.
PMCID: PMC1986602
Evolution
From the Cover:
Strong coupling of predation intensity and diversity in the Phanerozoic fossil record
John Warren Huntley and Michał Kowalewski
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15006–15010. Published online 2007 September 12. doi: 10.1073/pnas.0704960104.
PMCID: PMC1986603
Different cognitive processes underlie human mate choices and mate preferences
Peter M. Todd, Lars Penke, Barbara Fasolo, and Alison P. Lenton
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15011–15016. Published online 2007 September 7. doi: 10.1073/pnas.0705290104.
PMCID: PMC1986604
From the Cover:
Coupling of dispersal and aggression facilitates the rapid range expansion of a passerine bird
Renée A. Duckworth and Alexander V. Badyaev
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15017–15022. Published online 2007 September 7. doi: 10.1073/pnas.0706174104.
PMCID: PMC1986605
The hypothesis of reproductive compensation and its assumptions about mate preferences and offspring viability
Patricia Adair Gowaty, Wyatt W. Anderson, Cynthia K. Bluhm, Lee C. Drickamer, Yong-Kyu Kim, and Allen J. Moore
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15023–15027. Published online 2007 September 11. doi: 10.1073/pnas.0706622104.
PMCID: PMC1986606
Genetics
Dual-specificity splice sites function alternatively as 5′ and 3′ splice sites
Chaolin Zhang, Michelle L. Hastings, Adrian R. Krainer, and Michael Q. Zhang
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15028–15033. Published online 2007 September 11. doi: 10.1073/pnas.0703773104.
PMCID: PMC1986607
Visualizing the dynamics of p21Waf1/Cip1 cyclin-dependent kinase inhibitor expression in living animals
Naoko Ohtani, Yuko Imamura, Kimi Yamakoshi, Fumiko Hirota, Rika Nakayama, Yoshiaki Kubo, Naozumi Ishimaru, Akiko Takahashi, Atsushi Hirao, Takatsune Shimizu, David J. Mann, Hideyuki Saya, Yoshio Hayashi, Seiji Arase, Mitsuru Matsumoto, Nakao Kazuki, and Eiji Hara
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15034–15039. Published online 2007 September 11. doi: 10.1073/pnas.0706949104.
PMCID: PMC1975854
Insulin gene mutations as a cause of permanent neonatal diabetes
Julie Støy, Emma L. Edghill, Sarah E. Flanagan, Honggang Ye, Veronica P. Paz, Anna Pluzhnikov, Jennifer E. Below, M. Geoffrey Hayes, Nancy J. Cox, Gregory M. Lipkind, Rebecca B. Lipton, Siri Atma W. Greeley, Ann-Marie Patch, Sian Ellard, Donald F. Steiner, Andrew T. Hattersley, Louis H. Philipson, Graeme I. Bell, and Neonatal Diabetes International Collaborative Group
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15040–15044. Published online 2007 September 12. doi: 10.1073/pnas.0707291104.
PMCID: PMC1986609
Immunology
Increased competition for antigen during priming negatively impacts the generation of memory CD4 T cells
David A. Blair and Leo Lefrançois
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15045–15050. Published online 2007 September 7. doi: 10.1073/pnas.0703767104.
PMCID: PMC1986610
Structural basis for evasion of IgA immunity by Staphylococcus aureus revealed in the complex of SSL7 with Fc of human IgA1
Paul A. Ramsland, Natasha Willoughby, Halina M. Trist, William Farrugia, P. Mark Hogarth, John D. Fraser, and Bruce D. Wines
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15051–15056. Published online 2007 September 11. doi: 10.1073/pnas.0706028104.
PMCID: PMC1986611
Activation of naturally occurring lung CD4+CD25+ regulatory T cells requires CD8 and MHC I interaction
Anthony Joetham, Katsuyuki Takeda, Nobuaki Miyahara, Shigeki Matsubara, Hiroshi Ohnishi, Toshiyuki Koya, Azzeddine Dakhama, and Erwin W. Gelfand
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15057–15062. Published online 2007 September 12. doi: 10.1073/pnas.0706765104.
PMCID: PMC1986612
Chicken cathelicidin-B1, an antimicrobial guardian at the mucosal M cell gateway
Ryo Goitsuka, Chen-lo H. Chen, Lesley Benyon, Yusuke Asano, Daisuke Kitamura, and Max D. Cooper
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15063–15068. Published online 2007 September 7. doi: 10.1073/pnas.0707037104.
PMCID: PMC1986613
Medical Sciences
Gut-expressed gustducin and taste receptors regulate secretion of glucagon-like peptide-1
Hyeung-Jin Jang, Zaza Kokrashvili, Michael J. Theodorakis, Olga D. Carlson, Byung-Joon Kim, Jie Zhou, Hyeon Ho Kim, Xiangru Xu, Sic L. Chan, Magdalena Juhaszova, Michel Bernier, Bedrich Mosinger, Robert F. Margolskee, and Josephine M. Egan
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15069–15074. Published online 2007 August 27. doi: 10.1073/pnas.0706890104.
PMCID: PMC1986614
From the Cover:
T1R3 and gustducin in gut sense sugars to regulate expression of Na+-glucose cotransporter 1
Robert F. Margolskee, Jane Dyer, Zaza Kokrashvili, Kieron S. H. Salmon, Erwin Ilegems, Kristian Daly, Emeline L. Maillet, Yuzo Ninomiya, Bedrich Mosinger, and Soraya P. Shirazi-Beechey
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15075–15080. Published online 2007 August 27. doi: 10.1073/pnas.0706678104.
PMCID: PMC1986615
Myocardial ischemia results in tetrahydrobiopterin (BH4) oxidation with impaired endothelial function ameliorated by BH4
Cristian Dumitrescu, Roberto Biondi, Yong Xia, Arturo J. Cardounel, Lawrence J. Druhan, Giuseppe Ambrosio, and Jay L. Zweier
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15081–15086. Published online 2007 September 11. doi: 10.1073/pnas.0702986104.
PMCID: PMC1986616
Oxidative stress causes bone loss in estrogen-deficient mice through enhanced bone marrow dendritic cell activation
Francesco Grassi, Gianluca Tell, Michaela Robbie-Ryan, Yuhao Gao, Masakazu Terauchi, Xiaoying Yang, Milena Romanello, Dean P. Jones, M. Neale Weitzmann, and Roberto Pacifici
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15087–15092. Published online 2007 September 11. doi: 10.1073/pnas.0703610104.
PMCID: PMC1986617
High-density lipoprotein protects macrophages from oxidized low-density lipoprotein-induced apoptosis by promoting efflux of 7-ketocholesterol via ABCG1
Naoki Terasaka, Nan Wang, Laurent Yvan-Charvet, and Alan R. Tall
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15093–15098. Published online 2007 September 10. doi: 10.1073/pnas.0704602104.
PMCID: PMC1986618
Microbiology
Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph
Sky E. Rashby, Alex L. Sessions, Roger E. Summons, and Dianne K. Newman
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15099–15104. Published online 2007 September 11. doi: 10.1073/pnas.0704912104.
PMCID: PMC1986619
Envelope variation as a primary determinant of lentiviral vaccine efficacy
Jodi K. Craigo, Baoshan Zhang, Shannon Barnes, Tara L. Tagmyer, Sheila J. Cook, Charles J. Issel, and Ronald C. Montelaro
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15105–15110. Published online 2007 September 10. doi: 10.1073/pnas.0706449104.
PMCID: PMC1986620
Neuroscience
Nonhuman primate event-related potentials indexing covert shifts of attention
Geoffrey F. Woodman, Min-Suk Kang, Andrew F. Rossi, and Jeffrey D. Schall
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15111–15116. Published online 2007 September 11. doi: 10.1073/pnas.0703477104.
PMCID: PMC1986621
Genetic contributions to white matter architecture revealed by diffusion tensor imaging in Williams syndrome
Stefano Marenco, Michael A. Siuta, J. Shane Kippenhan, Samuel Grodofsky, Wei-li Chang, Philip Kohn, Carolyn B. Mervis, Colleen A. Morris, Daniel R. Weinberger, Andreas Meyer-Lindenberg, Carlo Pierpaoli, and Karen Faith Berman
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15117–15122. Published online 2007 September 7. doi: 10.1073/pnas.0704311104.
PMCID: PMC1986622
Human cone photoreceptor dependence on RPE65 isomerase
Samuel G. Jacobson, Tomas S. Aleman, Artur V. Cideciyan, Elise Heon, Marcin Golczak, William A. Beltran, Alexander Sumaroka, Sharon B. Schwartz, Alejandro J. Roman, Elizabeth A. M. Windsor, James M. Wilson, Gustavo D. Aguirre, Edwin M. Stone, and Krzysztof Palczewski
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15123–15128. Published online 2007 September 11. doi: 10.1073/pnas.0706367104.
PMCID: PMC1986623
Color contrast processing in human striate cortex
R. W. Kentridge, C. A. Heywood, and L. Weiskrantz
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15129–15131. Published online 2007 September 6. doi: 10.1073/pnas.0706603104.
PMCID: PMC1986624
Caenorhabditis elegans neuronal regeneration is influenced by life stage, ephrin signaling, and synaptic branching
Zilu Wu, Anindya Ghosh-Roy, Mehmet Fatih Yanik, Jin Z. Zhang, Yishi Jin, and Andrew D. Chisholm
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15132–15137. Published online 2007 September 11. doi: 10.1073/pnas.0707001104.
PMCID: PMC1975853
Effects of simian immunodeficiency virus on the circadian rhythms of body temperature and gross locomotor activity
Salvador Huitron-Resendiz, Maria Cecilia G. Marcondes, Claudia T. Flynn, Caroline M. S. Lanigan, and Howard S. Fox
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15138–15143. Published online 2007 September 10. doi: 10.1073/pnas.0707171104.
PMCID: PMC1986626
Physiology
MicroRNA regulation of cyclooxygenase-2 during embryo implantation
Anindita Chakrabarty, Susanne Tranguch, Takiko Daikoku, Kevin Jensen, Henry Furneaux, and Sudhansu K. Dey
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15144–15149. Published online 2007 September 11. doi: 10.1073/pnas.0705917104.
PMCID: PMC1986627
Plant Biology
Silencing of poly(ADP-ribose) polymerase in plants alters abiotic stress signal transduction
Sandy Vanderauwera, Marc De Block, Nancy Van de Steene, Brigitte van de Cotte, Michael Metzlaff, and Frank Van Breusegem
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15150–15155. Published online 2007 September 6. doi: 10.1073/pnas.0706668104.
PMCID: PMC1986628
RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation
Yan Ma Crane and Stanton B. Gelvin
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15156–15161. Published online 2007 September 7. doi: 10.1073/pnas.0706986104.
PMCID: PMC1986629
Population Biology
DNA evidence for historic population size and past ecosystem impacts of gray whales
S. Elizabeth Alter, Eric Rynes, and Stephen R. Palumbi
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15162–15167. Published online 2007 September 11. doi: 10.1073/pnas.0706056104.
PMCID: PMC1975855
Social Sciences
Psychology
Different cognitive processes underlie human mate choices and mate preferences
Peter M. Todd, Lars Penke, Barbara Fasolo, and Alison P. Lenton
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15011–15016. Published online 2007 September 7. doi: 10.1073/pnas.0705290104.
PMCID: PMC1986604
Correction
Correction for Bock-Axelsen et al., Genes overexpressed in different human solid cancers exhibit different tissue-specific expression profiles
Jacob Bock Axelsen, Joseph Lotem, Leo Sachs, and Eytan Domany
Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 15168. Published online 2007 September 7. doi: 10.1073/pnas.0707795104.
PMCID: PMC1986631
Corrects: Jacob Bock Axelsen, et al. Genes overexpressed in different human solid cancers exhibit different tissue-specific expression profiles. Proc Natl Acad Sci U S A. 2007 August 7; 104(32): 13122–13127.
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