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Volume 12(12);  December 2006
Meeting Report
The blossoming of RNA biology: Novel insights from plant systems
Jérôme Bove, Carey L.H. Hord, and Melissa A. Mullen
RNA. 2006 December; 12(12): 2035–2046. doi: 10.1261/rna.303806.
PMCID: PMC1664721
Bioinformatics
Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site
Yimeng Dou, Kristi L. Fox-Walsh, Pierre F. Baldi, and Klemens J. Hertel
RNA. 2006 December; 12(12): 2047–2056. doi: 10.1261/rna.151106.
PMCID: PMC1664720
Report
Dynamic association and localization of human H/ACA RNP proteins
Nupur Kittur, Xavier Darzacq, Sujayita Roy, Robert H. Singer, and U. Thomas Meier
RNA. 2006 December; 12(12): 2057–2062. doi: 10.1261/rna.249306.
PMCID: PMC1664726
Articles
An unusual Dicer-like1 protein fuels the RNA interference pathway in Trypanosoma brucei
Huafang Shi, Christian Tschudi, and Elisabetta Ullu
RNA. 2006 December; 12(12): 2063–2072. doi: 10.1261/rna.246906.
PMCID: PMC1664728
Imaging the alternative silencing of FGFR2 exon IIIb in vivo
Vivian I. Bonano, Sebastian Oltean, Robert M. Brazas, and Mariano A. Garcia-Blanco
RNA. 2006 December; 12(12): 2073–2079. doi: 10.1261/rna.248506.
PMCID: PMC1664716
A novel single amino acid change in small subunit ribosomal protein S5 has profound effects on translational fidelity
Narayanaswamy Kirthi, Biswajoy Roy-Chaudhuri, Teresa Kelley, and Gloria M. Culver
RNA. 2006 December; 12(12): 2080–2091. doi: 10.1261/rna.302006.
PMCID: PMC1664723
Characterization of the short RNAs bound by the P19 suppressor of RNA silencing in mouse embryonic stem cells
J. Mauro Calabrese and Phillip A. Sharp
RNA. 2006 December; 12(12): 2092–2102. doi: 10.1261/rna.224606.
PMCID: PMC1664724
Genetic and biochemical characterization of Drosophila Snipper: A promiscuous member of the metazoan 3′hExo/ERI-1 family of 3′ to 5′ exonucleases
Jeremy M. Kupsco, Ming-Jing Wu, William F. Marzluff, Roopa Thapar, and Robert J. Duronio
RNA. 2006 December; 12(12): 2103–2117. doi: 10.1261/rna.186706.
PMCID: PMC1664731
Topological rearrangement yields structural stabilization and interhelical distance constraints in the Kin.46 self-phosphorylating ribozyme
Bongrae Cho and Donald H. Burke
RNA. 2006 December; 12(12): 2118–2125. doi: 10.1261/rna.173506.
PMCID: PMC1664729
Structure-guided mutational analysis of T4 RNA ligase 1
Li Kai Wang, Beate Schwer, and Stewart Shuman
RNA. 2006 December; 12(12): 2126–2134. doi: 10.1261/rna.271706.
PMCID: PMC1664725
The precursor tRNA 3′-CCA interaction with Escherichia coli RNase P RNA is essential for catalysis by RNase P in vivo
Barbara Wegscheid and Roland K. Hartmann
RNA. 2006 December; 12(12): 2135–2148. doi: 10.1261/rna.188306.
PMCID: PMC1664727
Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast
Scott A. Jackson, Sujatha Koduvayur, and Sarah A. Woodson
RNA. 2006 December; 12(12): 2149–2159. doi: 10.1261/rna.184206.
PMCID: PMC1664722
The canonical UPF1-dependent nonsense-mediated mRNA decay is inhibited in transcripts carrying a short open reading frame independent of sequence context
Ana Luísa Silva, Francisco J.C. Pereira, Ana Morgado, Jian Kong, Rute Martins, Paula Faustino, Stephen A. Liebhaber, and Luísa RomÃo
RNA. 2006 December; 12(12): 2160–2170. doi: 10.1261/rna.201406.
PMCID: PMC1664719
Roles of a Trypanosoma brucei 5′→3′ exoribonuclease homolog in mRNA degradation
Chi-Ho Li, Henriette Irmer, Drifa Gudjonsdottir-Planck, Simone Freese, Heike Salm, Simon Haile, Antonio M. Estévez, and Christine Clayton
RNA. 2006 December; 12(12): 2171–2186. doi: 10.1261/rna.291506.
PMCID: PMC1664730
tmRNA determinants required for facilitating nonstop mRNA decay
Preeti Mehta, Jamie Richards, and A. Wali Karzai
RNA. 2006 December; 12(12): 2187–2198. doi: 10.1261/rna.247706.
PMCID: PMC1664718
Conformational organization of the 3′ untranslated region in the tomato bushy stunt virus genome
Hong Na, Marc R. Fabian, and K. Andrew White
RNA. 2006 December; 12(12): 2199–2210. doi: 10.1261/rna.238606.
PMCID: PMC1664717
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