| | This journal provides immediate access to some articles. Bioinformatics Archaeology and evolution of transfer RNA genes in the Escherichia coli genome Mike Withers, Lorenz Wernisch, and Mario Dos Reis PMCID: PMC1464854 Reports Functional replacement of Trypanosoma brucei Argonaute by the human slicer Argonaute2 Huafang Shi, Christian Tschudi, and Elisabetta Ullu PMCID: PMC1464859 Cryptic splice site usage in exon 7 of the human fibrinogen Bβ-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon Silvia Spena, Maria Luisa Tenchini, and Emanuele Buratti PMCID: PMC1464855 Articles The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold Shuying Wang, Yaoxiong Hu, Michael T. Overgaard, Fedor V. Karginov, Olke C. Uhlenbeck, and David B. McKay PMCID: PMC1464845 Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly Daniel F. Tardiff and Michael Rosbash PMCID: PMC1464846 Nucleobase catalysis in the hairpin ribozyme Timothy J. Wilson, Jonathan Ouellet, Zheng-Yun Zhao, Shinya Harusawa, Lisa Araki, Takushi Kurihara, and David M.J. Lilley PMCID: PMC1464849 Induction of the interferon response by siRNA is cell type– and duplex length–dependent Angela Reynolds, Emily M. Anderson, Annaleen Vermeulen, Yuriy Fedorov, Kathryn Robinson, Devin Leake, Jon Karpilow, William S. Marshall, and Anastasia Khvorova PMCID: PMC1464853 Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA Pascal J. Preker and Christine Guthrie PMCID: PMC1464842 tRNAHis guanylyltransferase adds G−1 to the 5′ end of tRNAHis by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases Jane E. Jackman and Eric M. Phizicky PMCID: PMC1464847 Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation Joachim B. Kunz, Gabriele Neu-Yilik, Matthias W. Hentze, Andreas E. Kulozik, and Niels H. Gehring PMCID: PMC1464862 Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP Shaohua Xiao, John Hsieh, Rebecca L. Nugent, Daniel J. Coughlin, Carol A. Fierke, and David R. Engelke PMCID: PMC1464857 Compositionally and functionally distinct editosomes in Trypanosoma brucei
Aswini K. Panigrahi, Nancy Lewis Ernst, Gonzalo J. Domingo, Michele Fleck, Reza Salavati, and Kenneth D. Stuart PMCID: PMC1464856 Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: Structure probing of a gRNA bound to its cognate mRNA Laura E. Yu and Donna J. Koslowsky PMCID: PMC1464861 Restoration in vivo of defective hepatitis delta virus RNA genomes Severin O. Gudima, Jinhong Chang, and John M. Taylor PMCID: PMC1464851 Assessing IRES activity in the HIF-1α and other cellular 5′ UTRs Andrew G. Bert, Renaud Grépin, Mathew A. Vadas, and Gregory J. Goodall PMCID: PMC1464860 CUG-BP binds to RNA substrates and recruits PARN deadenylase Karen C.M. Moraes, Carol J. Wilusz, and Jeffrey Wilusz PMCID: PMC1464848 The coiled-coil domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation Xinxin Zhang, Erica A. Champion, Elizabeth J. Tran, Bernard A. Brown, II, Susan J. Baserga, and E. Stuart Maxwell PMCID: PMC1464844 Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3′ end processing Neela Zareen, Angela Hopkinson, and Louis Levinger PMCID: PMC1464858 hnRNP A1 associates with telomere ends and stimulates telomerase activity Qing-Shuo Zhang, Lisa Manche, Rui-Ming Xu, and Adrian R. Krainer PMCID: PMC1464852 Method Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays Emily A. Newman, Stephanie J. Muh, Ruben H. Hovhannisyan, Claude C. Warzecha, Richard B. Jones, Wallace L. Mckeehan, and Russ P. Carstens PMCID: PMC1464843 Efficient RNA 5′-adenylation by T4 DNA ligase to facilitate practical applications Yangming Wang and Scott K. Silverman PMCID: PMC1464850 |
