| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 August 2; 102(31): 10755–10756. doi: 10.1073/iti3105102.PMCID: PMC1182472 Introduction Supramolecular Structure and Dynamics Special Feature: Supramolecular structure and dynamics Nicholas J. Turro PMCID: PMC1182471 Commentaries Tropical mountain cradles of dry forest diversity Christopher W. Dick and S. Joseph Wright PMCID: PMC1182466 Obesity and metabolic perturbations after loss of aquaporin 7, the adipose glycerol transporter Ormond A. MacDougald and Charles F. Burant PMCID: PMC1182462 A different point of hue Bevil R. Conway and Margaret S. Livingstone PMCID: PMC1182445 Lipotechoic acid in lactobacilli: d-Alanine makes the difference Willem M. de Vos PMCID: PMC1182463 Supramolecular Structure and Dynamics Special Feature Perspective Molecular structure as a blueprint for supramolecular structure chemistry in confined spaces Nicholas J. Turro PMCID: PMC1182412 Crystalline molecular machines: Encoding supramolecular dynamics into molecular structure Miguel A. Garcia-Garibay PMCID: PMC1182427 Supramolecular Structure and Dynamics Special Feature: Functional cavitands: Chemical reactivity in structured environments Byron W. Purse and Julius Rebek, Jr. PMCID: PMC1182416 Supramolecular Structure and Dynamics Special Feature: Possible role of the 11-cis-retinyl conformation in controlling the dual decay processes of excited rhodopsin Robert S. H. Liu, George S. Hammond, and Taraneh Mirzadegan PMCID: PMC1182415 Electrically monitoring DNA repair by photolyase Maria C. DeRosa, Aziz Sancar, and Jacqueline K. Barton PMCID: PMC1182438 Supramolecular Structure and Dynamics Special Feature: Magnetic isotope effect of magnesium in phosphoglycerate kinase phosphorylation Anatoly L. Buchachenko, Dmitri A. Kouznetsov, Marina A. Orlova, and Artyom A. Markarian PMCID: PMC1182455 Physical Sciences Applied Mathematics From the Cover:
Evolutionary cycles of cooperation and defection Lorens A. Imhof, Drew Fudenberg, and Martin A. Nowak PMCID: PMC1182423 Chemistry Supramolecular Structure and Dynamics Special Feature: Functional cavitands: Chemical reactivity in structured environments Byron W. Purse and Julius Rebek, Jr. PMCID: PMC1182416 Supramolecular Structure and Dynamics Special Feature: Possible role of the 11-cis-retinyl conformation in controlling the dual decay processes of excited rhodopsin Robert S. H. Liu, George S. Hammond, and Taraneh Mirzadegan PMCID: PMC1182415 Supramolecular Structure and Dynamics Special Feature: Magnetic isotope effect of magnesium in phosphoglycerate kinase phosphorylation Anatoly L. Buchachenko, Dmitri A. Kouznetsov, Marina A. Orlova, and Artyom A. Markarian PMCID: PMC1182455 Self-assembled graphitic nanotubes with one-handed helical arrays of a chiral amphiphilic molecular graphene Wusong Jin, Takanori Fukushima, Makiko Niki, Atsuko Kosaka, Noriyuki Ishii, and Takuzo Aida PMCID: PMC1182409 Functional conformational motions in the turnover cycle of cholesterol oxidase Hans-Philipp Lerch, Rudolf Rigler, and Alexander S. Mikhailov PMCID: PMC1182465 Engineering Permeation-driven flow in poly(dimethylsiloxane) microfluidic devices Greg C. Randall and Patrick S. Doyle PMCID: PMC1182434 Environmental Sciences Noise-induced stability in dryland plant ecosystems Paolo D'Odorico, Francesco Laio, and Luca Ridolfi PMCID: PMC1182429 Geophysics Drier summers cancel out the CO2 uptake enhancement induced by warmer springs A. Angert, S. Biraud, C. Bonfils, C. C. Henning, W. Buermann, J. Pinzon, C. J. Tucker, and I. Fung PMCID: PMC1180508 The high-pressure phase of alumina and implications for Earth's D″ layer Artem R. Oganov and Shigeaki Ono PMCID: PMC1182418 Contributions of past and present human generations to committed warming caused by carbon dioxide Pierre Friedlingstein and Susan Solomon PMCID: PMC1182447 Physics Space–time thermodynamics of the glass transition Mauro Merolle, Juan P. Garrahan, and David Chandler PMCID: PMC1182452 Biological Sciences Applied Biological Sciences Engineering a signal transduction mechanism for protein-based biosensors Jonathan E. Kohn and Kevin W. Plaxco PMCID: PMC1182433 DNA-based vaccines activate innate and adaptive antitumor immunity by engaging the NKG2D receptor He Zhou, Yunping Luo, Jeng-fan Lo, Charles D. Kaplan, Masato Mizutani, Noriko Mizutani, Jiing-Dwan Lee, F. James Primus, Jürgen C. Becker, Rong Xiang, and Ralph A. Reisfeld PMCID: PMC1182421 Biochemistry Investigating diversity in human plasma proteins Dobrin Nedelkov, Urban A. Kiernan, Eric E. Niederkofler, Kemmons A. Tubbs, and Randall W. Nelson PMCID: PMC1180507 Docosahexaenoic acid: A positive modulator of Akt signaling in neuronal survival Mohammed Akbar, Frances Calderon, Zhiming Wen, and Hee-Yong Kim PMCID: PMC1182431 Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro Arthur J. Zaug, Elaine R. Podell, and Thomas R. Cech PMCID: PMC1180509 Biophysics The structure of phospholamban pentamer reveals a channel-like architecture in membranes Kirill Oxenoid and James J. Chou PMCID: PMC1182456 Automated projection spectroscopy (APSY) Sebastian Hiller, Francesco Fiorito, Kurt Wüthrich, and Gerhard Wider PMCID: PMC1182451 Activationless electron transfer through the hydrophobic core of cytochrome c oxidase Audrius Jasaitis, Fabrice Rappaport, Eric Pilet, Ursula Liebl, and Marten H. Vos PMCID: PMC1182432 Cell Biology Formation of morphologically similar globular aggregates from diverse aggregation-prone proteins in mammalian cells Hideyuki Mukai, Takayuki Isagawa, Emiko Goyama, Shuhei Tanaka, Neil F. Bence, Atsuo Tamura, Yoshitaka Ono, and Ron R. Kopito PMCID: PMC1182404 Developmental Biology Redundant control of the Caenorhabditis elegans sperm/oocyte switch by PUF-8 and FBF-1, two distinct PUF RNA-binding proteins Jennifer L. Bachorik and Judith Kimble PMCID: PMC1182444 The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb Brian D. Harfe, Michael T. McManus, Jennifer H. Mansfield, Eran Hornstein, and Clifford J. Tabin PMCID: PMC1182454 Ecology Mid- to late-Holocene El Niño-Southern Oscillation dynamics reflected in the subtropical terrestrial realm Timme H. Donders, Friederike Wagner, David L. Dilcher, and Henk Visscher PMCID: PMC1182467 Ground-based and remotely sensed nutrient availability across a tropical landscape Stephen Porder, Gregory P. Asner, and Peter M. Vitousek PMCID: PMC1182458 Environmental Sciences The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses Barbara A. Methé, Karen E. Nelson, Jody W. Deming, Bahram Momen, Eugene Melamud, Xijun Zhang, John Moult, Ramana Madupu, William C. Nelson, Robert J. Dodson, Lauren M. Brinkac, Sean C. Daugherty, Anthony S. Durkin, Robert T. DeBoy, James F. Kolonay, Steven A. Sullivan, Liwei Zhou, Tanja M. Davidsen, Martin Wu, Adrienne L. Huston, Matthew Lewis, Bruce Weaver, Janice F. Weidman, Hoda Khouri, Terry R. Utterback, Tamara V. Feldblyum, and Claire M. Fraser PMCID: PMC1180510 Evolution From the Cover:
Timing the origin and expansion of the Mexican tropical dry forest Judith X. Becerra PMCID: PMC1182403 Giardia mitosomes and trichomonad hydrogenosomes share a common mode of protein targeting Pavel Dolezal, Ondrej Smíd, Petr Rada, Zuzana Zubácová, Dejan Bursać, Robert Suták, Jana Nebesárová, Trevor Lithgow, and Jan Tachezy PMCID: PMC1182405 Structure, function, and evolution of transient and obligate protein–protein interactions Julian Mintseris and Zhiping Weng PMCID: PMC1182425 A high frequency of overlapping gene expression in compacted eukaryotic genomes Bryony A. P. Williams, Claudio H. Slamovits, Nicola J. Patron, Naomi M. Fast, and Patrick J. Keeling PMCID: PMC1182411 Human vision fails to distinguish widespread sexual dichromatism among sexually “monochromatic” birds Muir D. Eaton PMCID: PMC1182419 Genetics Knockout mice reveal a tumor suppressor function for Testin Alessandra Drusco, Nicola Zanesi, Claudia Roldo, Francesco Trapasso, John L. Farber, Louise Y. Fong, and Carlo M. Croce PMCID: PMC1182460 Cohesins are required for meiotic DNA breakage and recombination in Schizosaccharomyces pombe Chad Ellermeier and Gerald R. Smith PMCID: PMC1182449 Evolution of heterochromatic genes of Drosophila Jiro C. Yasuhara, Christine H. DeCrease, and Barbara T. Wakimoto PMCID: PMC1176909 Slc7a11 gene controls production of pheomelanin pigment and proliferation of cultured cells Sreenivasulu Chintala, Wei Li, M. Lynn Lamoreux, Shosuke Ito, Kazumasa Wakamatsu, Elena V. Sviderskaya, Dorothy C. Bennett, Young-Mee Park, William A. Gahl, Marjan Huizing, Richard A. Spritz, Songtao Ben, Edward K. Novak, Jian Tan, and Richard T. Swank PMCID: PMC1178012 Immunology Disabling TNF receptor signaling by induced conformational perturbation of tryptophan-107 Ramachandran Murali, Xin Cheng, Alan Berezov, Xiulian Du, Arnie Schön, Ernesto Freire, Xiaowei Xu, Youhai H. Chen, and Mark I. Greene PMCID: PMC1182441 The molecular structure of the Toll-like receptor 3 ligand-binding domain Jessica K. Bell, Istvan Botos, Pamela R. Hall, Janine Askins, Joseph Shiloach, David M. Segal, and David R. Davies PMCID: PMC1182468 NK cytotoxicity against CD4+ T cells during HIV-1 infection: A gp41 peptide induces the expression of an NKp44 ligand Vincent Vieillard, Jack L. Strominger, and Patrice Debré PMCID: PMC1180624 Inhibition of a vaccine-induced anti-tumor B cell response by soluble protein antigen in the absence of continuing T cell help Natalia Savelyeva, Catherine A. King, Ellen S. Vitetta, and Freda K. Stevenson PMCID: PMC1182469 Medical Sciences From the Cover:
Aquaporin 7 deficiency is associated with development of obesity through activation of adipose glycerol kinase Toshiyuki Hibuse, Norikazu Maeda, Tohru Funahashi, Kaori Yamamoto, Azumi Nagasawa, Wataru Mizunoya, Ken Kishida, Kazuo Inoue, Hiroshi Kuriyama, Tadashi Nakamura, Tohru Fushiki, Shinji Kihara, and Iichiro Shimomura PMCID: PMC1182435 Endothelial nitric oxide synthase is critical for ischemic remodeling, mural cell recruitment, and blood flow reserve Jun Yu, Ebo D. deMuinck, Zhenwu Zhuang, Mary Drinane, Katalin Kauser, Gabor M. Rubanyi, Hu Sheng Qian, Takahisa Murata, Bruno Escalante, and William C. Sessa PMCID: PMC1182413 The gene associated with trichorhinophalangeal syndrome in humans is overexpressed in breast cancer Laszlo Radvanyi, Devender Singh-Sandhu, Scott Gallichan, Corey Lovitt, Artur Pedyczak, Gustavo Mallo, Kurt Gish, Kevin Kwok, Wedad Hanna, Judith Zubovits, Jane Armes, Deon Venter, Jalil Hakimi, Jean Shortreed, Melinda Donovan, Mark Parrington, Pamela Dunn, Ray Oomen, James Tartaglia, and Neil L. Berinstein PMCID: PMC1182410 Inhibition of drug-resistant mutants of ABL, KIT, and EGF receptor kinases Todd A. Carter, Lisa M. Wodicka, Neil P. Shah, Anne Marie Velasco, Miles A. Fabian, Daniel K. Treiber, Zdravko V. Milanov, Corey E. Atteridge, William H. Biggs, III, Philip T. Edeen, Mark Floyd, Julia M. Ford, Robert M. Grotzfeld, Sanna Herrgard, Darren E. Insko, Shamal A. Mehta, Hitesh K. Patel, William Pao, Charles L. Sawyers, Harold Varmus, Patrick P. Zarrinkar, and David J. Lockhart PMCID: PMC1180625 HIV-1 Nef down-regulates the hemochromatosis protein HFE, manipulating cellular iron homeostasis Hal Drakesmith, Nan Chen, Hannah Ledermann, Gavin Screaton, Alain Townsend, and Xiao-Ning Xu PMCID: PMC1180511 Genome-wide expression profiling of human blood reveals biomarkers for Huntington's disease F. Borovecki, L. Lovrecic, J. Zhou, H. Jeong, F. Then, H. D. Rosas, S. M. Hersch, P. Hogarth, B. Bouzou, R. V. Jensen, and D. Krainc PMCID: PMC1182457 Facilitated replacement of Kupffer cells expressing a paraoxonase-1 transgene is essential for ameliorating atherosclerosis in mice Gary Bradshaw, Alejandra Gutierrez, Jon H. Miyake, Kimberly R. Davis, Andrew C. Li, Christopher K. Glass, Linda K. Curtiss, and Roger A. Davis PMCID: PMC1182426 Jade-1, a candidate renal tumor suppressor that promotes apoptosis Mina I. Zhou, Rebecca L. Foy, Vipul C. Chitalia, Jin Zhao, Maria V. Panchenko, Hongmei Wang, and Herbert T. Cohen PMCID: PMC1182408 Ganglioside GD3 promotes cell growth and invasion through p130Cas and paxillin in malignant melanoma cells Kazunori Hamamura, Keiko Furukawa, Takanori Hayashi, Takeshi Hattori, Junji Nakano, Hideyuki Nakashima, Tetsuya Okuda, Hideki Mizutani, Hisashi Hattori, Minoru Ueda, Takeshi Urano, Kenneth O. Lloyd, and Koichi Furukawa PMCID: PMC1180226 Role of pro-IGF-II processing by proprotein convertase 4 in human placental development Qing Qiu, Ajoy Basak, Majambu Mbikay, Benjamin K. Tsang, and Andrée Gruslin PMCID: PMC1182422 Recombinant AAV2 transduction of primitive human hematopoietic stem cells capable of serial engraftment in immune-deficient mice Leah Santat, Helicia Paz, Christie Wong, Lijing Li, James Macer, Stephen Forman, K. K. Wong, and Saswati Chatterjee PMCID: PMC1182430 Epidemiological evidence of an early wave of the 1918 influenza pandemic in New York City Donald R. Olson, Lone Simonsen, Paul J. Edelson, and Stephen S. Morse PMCID: PMC1182402 Microbiology Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 Helene Feil, William S. Feil, Patrick Chain, Frank Larimer, Genevieve DiBartolo, Alex Copeland, Athanasios Lykidis, Stephen Trong, Matt Nolan, Eugene Goltsman, James Thiel, Stephanie Malfatti, Joyce E. Loper, Alla Lapidus, John C. Detter, Miriam Land, Paul M. Richardson, Nikos C. Kyrpides, Natalia Ivanova, and Steven E. Lindow PMCID: PMC1182459 Obesity alters gut microbial ecology Ruth E. Ley, Fredrik Bäckhed, Peter Turnbaugh, Catherine A. Lozupone, Robin D. Knight, and Jeffrey I. Gordon PMCID: PMC1176910 From the Cover:
Iron and Pseudomonas aeruginosa biofilm formation Ehud Banin, Michael L. Vasil, and E. Peter Greenberg PMCID: PMC1182440 Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa Isabelle Vallet-Gely, Katherine E. Donovan, Rui Fang, J. Keith Joung, and Simon L. Dove PMCID: PMC1182424 Neuroscience Agrin promotes synaptic differentiation by counteracting an inhibitory effect of neurotransmitter Thomas Misgeld, Terrance T. Kummer, Jeff W. Lichtman, and Joshua R. Sanes PMCID: PMC1182450 The voltage-gated potassium channel Kv1.3 is highly expressed on inflammatory infiltrates in multiple sclerosis brain Horea Rus, Carlos A. Pardo, Lina Hu, Erika Darrah, Cornelia Cudrici, Teodora Niculescu, Florin Niculescu, Katharine M. Mullen, Rameeza Allie, Liping Guo, Heike Wulff, Christine Beeton, Susan I. V. Judge, Douglas A. Kerr, Hans-Gunther Knaus, K. George Chandy, and Peter A. Calabresi PMCID: PMC1182417 Expression, physiological action, and coexpression patterns of neuropeptide Y in rat taste-bud cells Fang-li Zhao, Tiansheng Shen, Namik Kaya, Shao-gang Lu, Yu Cao, and Scott Herness PMCID: PMC1182420 Alterations in the α2 isoform of Na,K-ATPase associated with familial hemiplegic migraine type 2 Laura Segall, Alessandra Mezzetti, Rosemarie Scanzano, J. Jay Gargus, Enrico Purisima, and Rhoda Blostein PMCID: PMC1178013 Physiology Constitutively active L-type Ca2+ channels Manuel F. Navedo, Gregory C. Amberg, V. Scott Votaw, and Luis F. Santana PMCID: PMC1180225 Plant Biology Trehalose 6-phosphate regulates starch synthesis via posttranslational redox activation of ADP-glucose pyrophosphorylase Anna Kolbe, Axel Tiessen, Henriette Schluepmann, Matthew Paul, Silke Ulrich, and Peter Geigenberger PMCID: PMC1180623 Social Sciences Social Sciences From the Cover:
Evolutionary cycles of cooperation and defection Lorens A. Imhof, Drew Fudenberg, and Martin A. Nowak PMCID: PMC1182423 Correction Proc Natl Acad Sci U S A. 2005 August 2; 102(31): 11124. doi: 10.1073/pnas.0505430102.PMCID: PMC1182470 Corrects: Anura P. Jayasooriya, et al. Perinatal ω-3 polyunsaturated fatty acid supply modifies brain zinc homeostasis during adulthood. Proc Natl Acad Sci U S A. 2005 May 17; 102(20): 7133–7138. |
