| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 10407–10408. doi: 10.1073/iti3005102.PMCID: PMC1180815 Commentaries Multistable spatiotemporal patterns of cardiac activity Leon Glass PMCID: PMC1180794 Mind the gaps: Progress in progressive alignment D. G. Higgins, G. Blackshields, and I. M. Wallace PMCID: PMC1180805 Epigenetic drift in aging identical twins George M. Martin PMCID: PMC1180801 Physical Sciences Applied Mathematics Computational model of the cAMP-mediated sensory response and calcium-dependent adaptation in vertebrate olfactory receptor neurons Daniel P. Dougherty, Geraldine A. Wright, and Alice C. Yew PMCID: PMC1180786 Applied Physical Sciences A tool for filtering information in complex systems M. Tumminello, T. Aste, T. Di Matteo, and R. N. Mantegna PMCID: PMC1180754 Amyloid ion channels: A common structural link for protein-misfolding disease Arjan Quist, Ivo Doudevski, Hai Lin, Rushana Azimova, Douglas Ng, Blas Frangione, Bruce Kagan, Jorge Ghiso, and Ratnesh Lal PMCID: PMC1180768 Chemistry Altered retinoid homeostasis catalyzed by a nicotine metabolite: Implications in macular degeneration and normal development Andrew P. Brogan, Tobin J. Dickerson, Grant E. Boldt, and Kim D. Janda PMCID: PMC1180800 From the Cover:
Graphene nanostructures as tunable storage media for molecular hydrogen Serguei Patchkovskii, John S. Tse, Sergei N. Yurchenko, Lyuben Zhechkov, Thomas Heine, and Gotthard Seifert PMCID: PMC1180759 Engineering Electrolytic transport through a synthetic nanometer-diameter pore Chuen Ho, Rui Qiao, Jiunn B. Heng, Aveek Chatterjee, Rolf J. Timp, Narayana R. Aluru, and Gregory Timp PMCID: PMC1180756 Physics Two-dimensional atomic crystals K. S. Novoselov, D. Jiang, F. Schedin, T. J. Booth, V. V. Khotkevich, S. V. Morozov, and A. K. Geim PMCID: PMC1180777 Biological Sciences Biochemistry Regulation of human methylenetetrahydrofolate reductase by phosphorylation Kazuhiro Yamada, John R. Strahler, Philip C. Andrews, and Rowena G. Matthews PMCID: PMC1180802 Stimulation of mammalian translation initiation factor eIF4A activity by a small molecule inhibitor of eukaryotic translation Marie-Eve Bordeleau, James Matthews, Joanna M. Wojnar, Lisa Lindqvist, Olivia Novac, Eckhard Jankowsky, Nahum Sonenberg, Peter Northcote, Paul Teesdale-Spittle, and Jerry Pelletier PMCID: PMC1176247 Biochemical evidence for the requirement of Hoogsteen base pairing for replication by human DNA polymerase ι Robert E. Johnson, Louise Prakash, and Satya Prakash PMCID: PMC1180782 Effect of bicarbonate on iron-mediated oxidation of low-density lipoprotein Hirofumi Arai, Barbara S. Berlett, P. Boon Chock, and Earl R. Stadtman PMCID: PMC1176232 Gating of proton and water transfer in the respiratory enzyme cytochrome c oxidase Mårten Wikström, Camilla Ribacka, Mika Molin, Liisa Laakkonen, Michael Verkhovsky, and Anne Puustinen PMCID: PMC1180778 The TatA component of the twin-arginine protein transport system forms channel complexes of variable diameter Ulrich Gohlke, Lee Pullan, Christopher A. McDevitt, Ida Porcelli, Erik de Leeuw, Tracy Palmer, Helen R. Saibil, and Ben C. Berks PMCID: PMC1180781 Biophysics NMR data collection and analysis protocol for high-throughput protein structure determination Gaohua Liu, Yang Shen, Hanudatta S. Atreya, David Parish, Ying Shao, Dinesh K. Sukumaran, Rong Xiao, Adelinda Yee, Alexander Lemak, Aneerban Bhattacharya, Thomas A. Acton, Cheryl H. Arrowsmith, Gaetano T. Montelione, and Thomas Szyperski PMCID: PMC1180791 The solution structure of the Josephin domain of ataxin-3: Structural determinants for molecular recognition Giuseppe Nicastro, Rajesh P. Menon, Laura Masino, Philip P. Knowles, Neil Q. McDonald, and Annalisa Pastore PMCID: PMC1180765 Structure of Mycobacterium tuberculosis glutamine synthetase in complex with a transition-state mimic provides functional insights Wojciech W. Krajewski, T. Alwyn Jones, and Sherry L. Mowbray PMCID: PMC1180770 Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET Jose H. Hodak, Julie L. Fiore, David J. Nesbitt, Christopher D. Downey, and Arthur Pardi PMCID: PMC1180751 Rational combinatorial design of pore-forming β-sheet peptides Joshua M. Rausch, Jessica R. Marks, and William C. Wimley PMCID: PMC1180767 Destabilization of apoprotein is insufficient to explain Cu,Zn-superoxide dismutase-linked ALS pathogenesis Jorge A. Rodriguez, Bryan Francis Shaw, Armando Durazo, Se Hui Sohn, Peter A. Doucette, Aram M. Nersissian, Kym F. Faull, Daryl K. Eggers, Ashutosh Tiwari, Lawrence J. Hayward, and Joan Selverstone Valentine PMCID: PMC1175580 Paramyosin phosphorylation site disruption affects indirect flight muscle stiffness and power generation in Drosophila melanogaster Hongjun Liu, Mark S. Miller, Douglas M. Swank, William A. Kronert, David W. Maughan, and Sanford I. Bernstein PMCID: PMC1180758 Cell Biology Proliferation and invasion: Plasticity in tumor cells Chong-Feng Gao, Qian Xie, Yan-Li Su, Julie Koeman, Sok Kean Khoo, Margaret Gustafson, Beatrice S. Knudsen, Rick Hay, Nariyoshi Shinomiya, and George F. Vande Woude PMCID: PMC1180792 Ecology Barnacle reproductive hotspots linked to nearshore ocean conditions Heather M. Leslie, Erin N. Breck, Francis Chan, Jane Lubchenco, and Bruce A. Menge PMCID: PMC1180783 Evolution Factors that shape seed mass evolution Angela T. Moles, David D. Ackerly, Campbell O. Webb, John C. Tweddle, John B. Dickie, Andy J. Pitman, and Mark Westoby PMCID: PMC1180762 Genome-wide screen identifies host genes affecting viral RNA recombination Elena Serviene, Natalia Shapka, Chi-Ping Cheng, Tadas Panavas, Bencharong Phuangrat, Jannine Baker, and Peter D. Nagy PMCID: PMC1180806 From the Cover:
An archaeal antioxidant: Characterization of a Dps-like protein from Sulfolobus solfataricus Blake Wiedenheft, Jesse Mosolf, Deborah Willits, Mark Yeager, Kelly A. Dryden, Mark Young, and Trevor Douglas PMCID: PMC1175829 From the Cover:
An algorithm for progressive multiple alignment of sequences with insertions Ari Löytynoja and Nick Goldman PMCID: PMC1180752 Genetics Progressive proximal expansion of the primate X chromosome centromere Mary G. Schueler, John M. Dunn, Christine P. Bird, Mark T. Ross, Luigi Viggiano, NISC Comparative Sequencing Program, Mariano Rocchi, Huntington F. Willard, and Eric D. Green PMCID: PMC1180780 Characterization of complex apurinic/apyrimidinic-site clustering associated with an authentic site-specific radiation-induced DNA double-strand break Kamal Datta, Ronald D. Neumann, and Thomas A. Winters PMCID: PMC1180784 Yeast prions [URE3] and [PSI+] are diseases Toru Nakayashiki, Cletus P. Kurtzman, Herman K. Edskes, and Reed B. Wickner PMCID: PMC1180808 Immunology Recognition of a subregion of human proinsulin by class I-restricted T cells in type 1 diabetic patients Andréa Toma, Samy Haddouk, Jean-Paul Briand, Luc Camoin, Hanne Gahery, Francine Connan, Danielle Dubois-Laforgue, Sophie Caillat-Zucman, Jean-Gérard Guillet, Jean-Claude Carel, Sylviane Muller, Jeannine Choppin, and Christian Boitard PMCID: PMC1180789 Gene targeting of VEGF-A in thymus epithelium disrupts thymus blood vessel architecture Susanna M. Müller, Grzegorz Terszowski, Carmen Blum, Corinne Haller, Viviane Anquez, Stephen Kuschert, Peter Carmeliet, Hellmut G. Augustin, and Hans-Reimer Rodewald PMCID: PMC1180776 A stop codon polymorphism of Toll-like receptor 5 is associated with resistance to systemic lupus erythematosus Thomas R. Hawn, Hui Wu, Jennifer M. Grossman, Bevra H. Hahn, Betty P. Tsao, and Alan Aderem PMCID: PMC1180760 Accelerated chemokine receptor 7-mediated dendritic cell migration in Runx3 knockout mice and the spontaneous development of asthma-like disease Ofer Fainaru, David Shseyov, Shay Hantisteanu, and Yoram Groner PMCID: PMC1180803 Medical Sciences From the Cover:
Epigenetic differences arise during the lifetime of monozygotic twins Mario F. Fraga, Esteban Ballestar, Maria F. Paz, Santiago Ropero, Fernando Setien, Maria L. Ballestar, Damia Heine-Suñer, Juan C. Cigudosa, Miguel Urioste, Javier Benitez, Manuel Boix-Chornet, Abel Sanchez-Aguilera, Charlotte Ling, Emma Carlsson, Pernille Poulsen, Allan Vaag, Zarko Stephan, Tim D. Spector, Yue-Zhong Wu, Christoph Plass, and Manel Esteller PMCID: PMC1174919 Visceral adipose tissue-derived serine protease inhibitor: A unique insulin-sensitizing adipocytokine in obesity Kazuyuki Hida, Jun Wada, Jun Eguchi, Hong Zhang, Masako Baba, Aya Seida, Izumi Hashimoto, Tatsuo Okada, Akihiro Yasuhara, Atsuko Nakatsuka, Kenichi Shikata, Shinji Hourai, Junichiro Futami, Eijiro Watanabe, Yasushi Matsuki, Ryuji Hiramatsu, Shigeru Akagi, Hirofumi Makino, and Yashpal S. Kanwar PMCID: PMC1180799 Nephrogenic diabetes insipidus in mice lacking all nitric oxide synthase isoforms Tsuyoshi Morishita, Masato Tsutsui, Hiroaki Shimokawa, Ken Sabanai, Hiromi Tasaki, Osamu Suda, Sei Nakata, Akihide Tanimoto, Ke-Yong Wang, Yoichi Ueta, Yasuyuki Sasaguri, Yasuhide Nakashima, and Nobuyuki Yanagihara PMCID: PMC1175830 Cardiomyocyte hypertrophy and degradation of connexin43 through spatially restricted autocrine/paracrine heparin-binding EGF Jun Yoshioka, Robin N. Prince, Hayden Huang, Scott B. Perkins, Francisco U. Cruz, Catherine MacGillivray, Douglas A. Lauffenburger, and Richard T. Lee PMCID: PMC1180761 Effective treatment of experimental human non-Hodgkin's lymphomas with antagonists of growth hormone-releasing hormone Gunhild Keller, Andrew V. Schally, Kate Groot, Gabor L. Toller, Alexandre Havt, Frank Köster, Patricia Armatis, Gabor Halmos, Marta Zarandi, Jozsef L. Varga, and Jörg B. Engel PMCID: PMC1180787 Junctional adhesion molecule-A-deficient polymorphonuclear cells show reduced diapedesis in peritonitis and heart ischemia-reperfusion injury Monica Corada, Stefano Chimenti, Maria Rosaria Cera, Maria Vinci, Monica Salio, Fabio Fiordaliso, Noeleen De Angelis, Antonello Villa, Mario Bossi, Lidia I. Staszewsky, Annunciata Vecchi, Dario Parazzoli, Toshiyuki Motoike, Roberto Latini, and Elisabetta Dejana PMCID: PMC1180753 Investigation of antitumor effects of synthetic epothilone analogs in human myeloma models in vitro and in vivo Kai-Da Wu, Young Shin Cho, Jonathan Katz, Vladimir Ponomarev, Selina Chen-Kiang, Samuel J. Danishefsky, and Malcolm A. S. Moore PMCID: PMC1180795 Microbiology Activation of β-catenin by carcinogenic Helicobacter pylori Aime T. Franco, Dawn A. Israel, Mary K. Washington, Uma Krishna, James G. Fox, Arlin B. Rogers, Andrew S. Neish, Lauren Collier-Hyams, Guillermo I. Perez-Perez, Masanori Hatakeyama, Robert Whitehead, Kristin Gaus, Daniel P. O'Brien, Judith Romero-Gallo, and Richard M. Peek, Jr. PMCID: PMC1180811 From the Cover:
Ephrin-B2 ligand is a functional receptor for Hendra virus and Nipah virus Matthew I. Bonaparte, Antony S. Dimitrov, Katharine N. Bossart, Gary Crameri, Bruce A. Mungall, Kimberly A. Bishop, Vidita Choudhry, Dimiter S. Dimitrov, Lin-Fa Wang, Bryan T. Eaton, and Christopher C. Broder PMCID: PMC1169237 Chlamydial IFN-γ immune evasion is linked to host infection tropism David E. Nelson, Dezso P. Virok, Heidi Wood, Christine Roshick, Raymond M. Johnson, William M. Whitmire, Deborah D. Crane, Olivia Steele-Mortimer, Laszlo Kari, Grant McClarty, and Harlan D. Caldwell PMCID: PMC1180788 Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway Paula V. Welander and William W. Metcalf PMCID: PMC1180775 Variant tricarboxylic acid cycle in Mycobacterium tuberculosis: Identification of α-ketoglutarate decarboxylase Jing Tian, Ruslana Bryk, Manabu Itoh, Makoto Suematsu, and Carl Nathan PMCID: PMC1180764 Mutually dependent secretion of proteins required for mycobacterial virulence S. M. Fortune, A. Jaeger, D. A. Sarracino, M. R. Chase, C. M. Sassetti, D. R. Sherman, B. R. Bloom, and E. J. Rubin PMCID: PMC1176248 Role of domestic ducks in the propagation and biological evolution of highly pathogenic H5N1 influenza viruses in Asia D. J. Hulse-Post, K. M. Sturm-Ramirez, J. Humberd, P. Seiler, E. A. Govorkova, S. Krauss, C. Scholtissek, P. Puthavathana, C. Buranathai, T. D. Nguyen, H. T. Long, T. S. P. Naipospos, H. Chen, T. M. Ellis, Y. Guan, J. S. M. Peiris, and R. G. Webster PMCID: PMC1180796 Neuroscience Foxn4 acts synergistically with Mash1 to specify subtype identity of V2 interneurons in the spinal cord Shengguo Li, Kamana Misra, Michael P. Matise, and Mengqing Xiang PMCID: PMC1180804 Ephrin-B3 is a myelin-based inhibitor of neurite outgrowth M. Douglas Benson, Mario I. Romero, Mark E. Lush, Q. Richard Lu, Mark Henkemeyer, and Luis F. Parada PMCID: PMC1175581 Expansion of calcium microdomains regulates fast exocytosis at a ribbon synapse Vahri Beaumont, Artur Llobet, and Leon Lagnado PMCID: PMC1180766 Thickness of ventromedial prefrontal cortex in humans is correlated with extinction memory Mohammed R. Milad, Brian T. Quinn, Roger K. Pitman, Scott P. Orr, Bruce Fischl, and Scott L. Rauch PMCID: PMC1180773 Social cues shift functional connectivity in the hypothalamus Kim L. Hoke, Michael J. Ryan, and Walter Wilczynski PMCID: PMC1180772 Memory-influencing intra-basolateral amygdala drug infusions modulate expression of Arc protein in the hippocampus Christa K. McIntyre, Teiko Miyashita, Barry Setlow, Kristopher D. Marjon, Oswald Steward, John F. Guzowski, and James L. McGaugh PMCID: PMC1175582 Variable rate of singing and variable song duration are associated with high immediate early gene expression in two anterior forebrain song nuclei Wan-chun Liu and Fernando Nottebohm PMCID: PMC1180797 Physiology Ku86 preserves chromatin integrity in cells adapted to high NaCl Natalia I. Dmitrieva, Arkady Celeste, André Nussenzweig, and Maurice B. Burg PMCID: PMC1180807 Plant Biology Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants Andrea A. Ludwig, Hiromasa Saitoh, Georg Felix, Gerald Freymark, Otto Miersch, Claus Wasternack, Thomas Boller, Jonathan D. G. Jones, and Tina Romeis PMCID: PMC1176231 Population Biology Complementary sex determination substantially increases extinction proneness of haplodiploid populations Amro Zayed and Laurence Packer PMCID: PMC1180771 Psychology Repression of unconscious information by conscious processing: Evidence from affective blindsight induced by transcranial magnetic stimulation Jacob Jolij and Victor A. F. Lamme PMCID: PMC1180757 Corrections Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 10752. doi: 10.1073/pnas.0505226102.PMCID: PMC1180813 Corrects: Marci Surpin, et al. The power of chemical genomics to study the link between endomembrane system components and the gravitropic response. Proc Natl Acad Sci U S A. 2005 March 29; 102(13): 4902–4907. Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 10752. doi: 10.1073/pnas.0505477102.PMCID: PMC1180814 Corrects: Jin O-Uchi, et al. α1-Adrenoceptor stimulation potentiates L-type Ca2+ current through Ca2+/calmodulin-dependent PK II (CaMKII) activation in rat ventricular myocytes. Proc Natl Acad Sci U S A. 2005 June 28; 102(26): 9400–9405. Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 10753. doi: 10.1073/pnas.0505019102.PMCID: PMC1180812 Corrects: Michael Grabe, et al. A quantitative assessment of models for voltage-dependent gating of ion channels. Proc Natl Acad Sci U S A. 2004 December 21; 101(51): 17640–17645. |
