| | This journal provides immediate access to some articles. Editorial UPSIDE: Uniform Principle for Sharing Integral Data and Materials Expeditiously Nicholas R. Cozzarelli PMCID: PMC374308 Commentaries What arthropod brains say about arthropod phylogeny Susan E. Fahrbach PMCID: PMC374309 Controlling lentiviruses: Single amino acid changes can determine specificity Shari M. Kaiser and Michael Emerman PMCID: PMC374310 Biographies INAUGURAL ARTICLE by a Recently Elected Academy Member: Biography of Martha L. Ludwig Emma Hitt PMCID: PMC374311 INAUGURAL ARTICLE by a Recently Elected Academy Member: Biography of Jan-Åke Gustafsson Christen Brownlee PMCID: PMC374313 Physical Sciences Applied Physical Sciences The architecture of complex weighted networks A. Barrat, M. Barthélemy, R. Pastor-Satorras, and A. Vespignani PMCID: PMC374315 Geology From the Cover:
Chicxulub impact predates the K-T boundary mass extinction Gerta Keller, Thierry Adatte, Wolfgang Stinnesbeck, Mario Rebolledo-Vieyra, Jaime Urrutia Fucugauchi, Utz Kramar, and Doris Stüben PMCID: PMC374316 Biological Sciences Biochemistry Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli Jaya K. Kumar, Stanley Tabor, and Charles C. Richardson PMCID: PMC374317 Universality and flexibility in gene expression from bacteria to human Hiroki R. Ueda, Satoko Hayashi, Shinichi Matsuyama, Tetsuya Yomo, Seiichi Hashimoto, Steve A. Kay, John B. Hogenesch, and Masamitsu Iino PMCID: PMC374318 From the Cover:
A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor Hal P. Bogerd, Brian P. Doehle, Heather L. Wiegand, and Bryan R. Cullen PMCID: PMC374319 Fhit is a physiological target of the protein kinase Src Yuri Pekarsky, Preston N. Garrison, Alexey Palamarchuk, Nicola Zanesi, Rami I. Aqeilan, Kay Huebner, Larry D. Barnes, and Carlo M. Croce PMCID: PMC374320 Activation of the antioxidant enzyme 1-CYS peroxiredoxin requires glutathionylation mediated by heterodimerization with πGST Y. Manevich, S. I. Feinstein, and A. B. Fisher PMCID: PMC374321 Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system Luisa Cochella and Rachel Green PMCID: PMC374322 The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world Marie-Pierre Egloff, François Ferron, Valérie Campanacci, Sonia Longhi, Corinne Rancurel, Hélène Dutartre, Eric J. Snijder, Alexander E. Gorbalenya, Christian Cambillau, and Bruno Canard PMCID: PMC374323 Biophysics INAUGURAL ARTICLE by a Recently Elected Academy Member: Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase John C. Evans, Donald P. Huddler, Mark T. Hilgers, Gail Romanchuk, Rowena G. Matthews, and Martha L. Ludwig PMCID: PMC374312 Local feature frequency profile: A method to measure structural similarity in proteins In-Geol Choi, Jaimyoung Kwon, and Sung-Hou Kim PMCID: PMC374324 Protein dynamics and the immunological evolution of molecular recognition Ralph Jimenez, Georgina Salazar, Jun Yin, Taiha Joo, and Floyd E. Romesberg PMCID: PMC374325 Microsecond folding dynamics of the F13W G29A mutant of the B domain of staphylococcal protein A by laser-induced temperature jump George Dimitriadis, Adam Drysdale, Jeffrey K. Myers, Pooja Arora, Sheena E. Radford, Terence G. Oas, and D. Alastair Smith PMCID: PMC374326 The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists M. Yashar S. Kalani, Nagarajan Vaidehi, Spencer E. Hall, Rene J. Trabanino, Peter L. Freddolino, Maziyar A. Kalani, Wely B. Floriano, Victor Wai Tak Kam, and William A. Goddard, III PMCID: PMC374327 Structural basis for the function of a minimembrane protein subunit of yeast oligosaccharyltransferase Sergey Zubkov, William J. Lennarz, and Smita Mohanty PMCID: PMC374328 Cell Biology Vascularized thymic lobe transplantation in miniature swine: Thymopoiesis and tolerance induction across fully MHC-mismatched barriers Chisako Kamano, Parsia A. Vagefi, Naoki Kumagai, Shin Yamamoto, Rolf N. Barth, John C. LaMattina, Shannon G. Moran, David H. Sachs, and Kazuhiko Yamada PMCID: PMC374329 Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling Francois Blondeau, Brigitte Ritter, Patrick D. Allaire, Sylwia Wasiak, Martine Girard, Natasha K. Hussain, Annie Angers, Valerie Legendre-Guillemin, Line Roy, Daniel Boismenu, Robert E. Kearney, Alexander W. Bell, John J. M. Bergeron, and Peter S. McPherson PMCID: PMC374330 Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation Arash Komeili, Hojatollah Vali, Terrance J. Beveridge, and Dianne K. Newman PMCID: PMC374331 Cholesterol depletion induces PKA-mediated basolateral-to-apical transcytosis of the scavenger receptor class B type I in MDCK cells Patricia V. Burgos, Carla Klattenhoff, Erwin de la Fuente, Attilio Rigotti, and Alfonso González PMCID: PMC374332 Developmental Biology Coordinate enhancers share common organizational features in the Drosophila genome Albert Erives and Michael Levine PMCID: PMC374333 Repression of dMyc expression by Wingless promotes Rbf-induced G1 arrest in the presumptive Drosophila wing margin Molly Duman-Scheel, Laura A. Johnston, and Wei Du PMCID: PMC374334 Ecology From the Cover:
Physiologically mediated self/non-self discrimination in roots Michal Gruntman and Ariel Novoplansky PMCID: PMC374335 Evolution From the Cover:
The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships Martin Fanenbruck, Steffen Harzsch, and Johann Wolfgang Wägele PMCID: PMC374336 Immunology Spontaneous proliferation, a response of naïve CD4 T cells determined by the diversity of the memory cell repertoire Booki Min, Gilles Foucras, Martin Meier-Schellersheim, and William E. Paul PMCID: PMC374337 Interleukin 2 plays a central role in Th2 differentiation Javier Cote-Sierra, Gilles Foucras, Liying Guo, Lynda Chiodetti, Howard A. Young, Jane Hu-Li, Jinfang Zhu, and William E. Paul PMCID: PMC374338 Identification of a specific self-reactive IgM antibody that initiates intestinal ischemia/reperfusion injury Ming Zhang, William G. Austen, Jr., Isaac Chiu, Elisabeth M. Alicot, Rachel Hung, Minghe Ma, Nicola Verna, Min Xu, Herbert B. Hechtman, Francis D. Moore, Jr., and Michael C. Carroll PMCID: PMC374339 T cell immunity using transgenic B lymphocytes Mara Gerloni, Marta Rizzi, Paola Castiglioni, and Maurizio Zanetti PMCID: PMC374340 The E47 transcription factor negatively regulates CD5 expression during thymocyte development Yang Yang, Christopher H. Contag, Dean Felsher, Catherine M. Shachaf, Yuan Cao, Leonard A. Herzenberg, Leonore A. Herzenberg, and James W. Tung PMCID: PMC374341 Impaired IgA class switching in APRIL-deficient mice Emanuela Castigli, Sumi Scott, Fatma Dedeoglu, Paul Bryce, Haifa Jabara, Atul K. Bhan, Emiko Mizoguchi, and Raif S. Geha PMCID: PMC374342 Defective development of splenic and epidermal CD4+ dendritic cells in mice deficient for IFN regulatory factor-2 Eri Ichikawa, Shigeaki Hida, Yoshiki Omatsu, Susumu Shimoyama, Kazuhiko Takahara, Shinichi Miyagawa, Kayo Inaba, and Shinsuke Taki PMCID: PMC374343 Medical Sciences Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes Claudia D. Baldus, Sandya Liyanarachchi, Krzysztof Mrózek, Herbert Auer, Stephan M. Tanner, Martin Guimond, Amy S. Ruppert, Nehad Mohamed, Ramana V. Davuluri, Michael A. Caligiuri, Clara D. Bloomfield, and Albert de la Chapelle PMCID: PMC374344 Histone deacetylase inhibitor suberoylanilide hydroxamic acid reduces acute graft-versus-host disease and preserves graft-versus-leukemia effect Pavan Reddy, Yoshinobu Maeda, Kevin Hotary, Chen Liu, Leonid L. Reznikov, Charles A. Dinarello, and James L. M. Ferrara PMCID: PMC374345 From the Cover:
A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif) Bärbel Schröfelbauer, Darlene Chen, and Nathaniel R. Landau PMCID: PMC374346 Topical DNA oligonucleotide therapy reduces UV-induced mutations and photocarcinogenesis in hairless mice David A. Goukassian, Elizabeth Helms, Harry van Steeg, Conny van Oostrom, Jag Bhawan, and Barbara A. Gilchrest PMCID: PMC374347 β2-Glycoprotein I binds factor XI and inhibits its activation by thrombin and factor XIIa: Loss of inhibition by clipped β2-glycoprotein I Tong Shi, G. Michael Iverson, Jian C. Qi, Keith A. Cockerill, Matthew D. Linnik, Pamela Konecny, and Steven A. Krilis PMCID: PMC374348 Microbiology Docking of cytosolic chaperone-substrate complexes at the membrane ATPase during flagellar type III protein export Joanne Thomas, Graham P. Stafford, and Colin Hughes PMCID: PMC374349 Neuroscience Fluorometric measurements of conformational changes in glutamate transporters H. Peter Larsson, Anastassios V. Tzingounis, Hans P. Koch, and Michael P. Kavanaugh PMCID: PMC374350 Timing of brain-derived neurotrophic factor exposure affects life expectancy of new neurons Benjamín Alvarez-Borda, Bhagwattie Haripal, and Fernando Nottebohm PMCID: PMC374351 The scaling of frontal cortex in primates and carnivores Eliot C. Bush and John M. Allman PMCID: PMC374352 From the Cover:
GABA-mediated giant depolarizing potentials as coincidence detectors for enhancing synaptic efficacy in the developing hippocampus Alexander M. Kasyanov, Victoria F. Safiulina, Leon L. Voronin, and Enrico Cherubini PMCID: PMC374353 Stress-induced structural remodeling in hippocampus: Prevention by lithium treatment Gwendolyn E. Wood, L. Trevor Young, Lawrence P. Reagan, Biao Chen, and Bruce S. McEwen PMCID: PMC374354 Physiology INAUGURAL ARTICLE by a Recently Elected Academy Member: Estrogen receptors ERα and ERβ in proliferation in the rodent mammary gland Guojun Cheng, Zhang Weihua, Margaret Warner, and Jan-Åke Gustafsson PMCID: PMC374314 The quantal nature of Ca2+ sparks and in situ operation of the ryanodine receptor array in cardiac cells Shi Qiang Wang, Michael D. Stern, Eduardo Ríos, and Heping Cheng PMCID: PMC374355 Plant Biology CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis Fernando Novillo, José M. Alonso, Joseph R. Ecker, and Julio Salinas PMCID: PMC374356 Corrections Proc Natl Acad Sci U S A. 2004 March 16; 101(11): 3991. doi: 10.1073/pnas.0400521101.PMCID: PMC374357 Corrects: Ania Majewska, et al. Motility of dendritic spines in visual cortex in vivo: Changes during the critical period and effects of visual deprivation. Proc Natl Acad Sci U S A. 2003 December 23; 100(26): 16024–16029. Proc Natl Acad Sci U S A. 2004 March 16; 101(11): 3991. doi: 10.1073/pnas.0400666101.PMCID: PMC374358 Corrects: Ann Pearson, et al. Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus. Proc Natl Acad Sci U S A. 2003 December 23; 100(26): 15352–15357. |
