Upload a Sequence 1 from a local File
OR Paste Sequence 1 into this box (see format options)
Upload a Sequence 2 from a local File
OR Paste Sequence 2 into this box (see format options)
Gap extension penalty (default is 0.5)
Output Format: EMBOSS multiple FASTA multiple MSF multiple SRS multiple EMBOSS pairwise FASTA pairwise FASTA pairwise marking differences FASTA pairwise differences only FASTA pairwise simple FASTA pairwise simple with comments SRS pairwise Pairwise scores only
Word size (default is 10)
Gaphic Output Format PNG PostScript
Gap length penalty (default is 2 for protein, 4 for nucleic)
Gap length penalty (default is 0.5)
Alignment width (default is 16)
Word length for intial matching (default is 6)
>BACBRNA CTGGAAAACGTCACATTGCTTCCGCATATCGGGTCAGCAACGGCTAAAATCCGCTTGAATATGTTCACAC AAGCCGCTCAAAACATGATTGACGCCGTATACGGAAGAACGCCGAAAAACCTTACTAAGGAATTTCAATA AGAAGAAAAATCCCGGTTGGTTCAGCCGGGGTTTATTTTTCGCTAGATAAAAAGTACTATTTTTAAATTC TTTCTATTCCTTTCTTTCGTTGCTGATACAATGAAAAGGAATCAGCTTCACATGATGAAAATGGGAGGTA TTGCTTTGAAAAAACGATTATCGTGGATTTCCGTTTGTTTACTGGTGCTTGTCTCCGCGGCGGGGATGCT GTTTTCAACAGCTGCCAAAACGGAAACATCTTCTCACAAGGCACACACAGAAGCACAGGTTATCAACACG TTTGACGGGGTTGCGGATTATCTTCAGACATATCATAAGCTACCTGATAATTACATTACAAAATCAGAAG CACAAGCCCTCGGCTGGGTGGCATCAAAAGGGAACCTTGCAGACGTCGCTCCGGGGAAAAGCATCGGCGG AGACATCTTCTCAAACAGGGAAGGCAAACTCCCGGGCAAAAGCGGACGAACATGGCGTGAAGCGGATATT AACTATACATCAGGCTTCAGAAATTCAGACCGGATTCTTTACTCAAGCGACTGGCTGATTTACAAAACAA CGGACCATTATCAGACCTTTACAAAAATCAGATAACGAAAAAAACGGCTTCCCTGCGGAGGCCGTTTTTT TCAGCTTTACATAAAGTGTGTAATAAATTTTTCTTCAAACTCTGATCGGTCAATTTCACTTT