| | Articles Repair of oxidative DNA damage in Drosophila melanogaster: identification and characterization of dOgg1, a second DNA glycosylase activity for 8-hydroxyguanine and formamidopyrimidines Claudine Dherin, Miral Dizdaroglu, Hélène Doerflinger, Serge Boiteux, and J. Pablo Radicella PMCID: PMC115177 Intact MutY and its catalytic domain differentially contact with A/8-oxoG-containing DNA Xianghong Li and A-Lien Lu PMCID: PMC115170 Cloning and characterization of the Schizosaccharomyces pombe tRNA:pseudouridine synthase Pus1p Klaus Hellmuth, Henri Grosjean, Yuri Motorin, Karina Deinert, Ed Hurt, and George Simos PMCID: PMC115158 Deletion of a single hydrogen bonding atom from the MS2 RNA operator leads to dramatic rearrangements at the RNA–coat protein interface Elin Grahn, Nicola J. Stonehouse, Chris J. Adams, Kerstin Fridborg, Leonid Beigelman, Jasenka Matulic-Adamic, Stuart L. Warriner, Peter G. Stockley, and Lars Liljas PMCID: PMC115176 d(GA·TC)n microsatellite DNA sequences enhance homologous DNA recombination in SV40 minichromosomes Ariadna Benet, Gemma Mollà, and Fernando Azorín PMCID: PMC115175 Divergent mechanisms of 5′ 23S rRNA IVS processing in the α-proteobacteria Kenneth Zahn, Masayuki Inui, and Hideaki Yukawa PMCID: PMC115159 Cisplatin–DNA adducts inhibit translocation of the Ku subunits of DNA-PK John J. Turchi, Karen M. Henkels, and Yun Zhou PMCID: PMC115169 The NAD-dependent ligase encoded by yerG is an essential gene of Bacillus subtilis Marie-Agnès Petit and S. Dusko Ehrlich PMCID: PMC115163 Alteration of gene conversion tract length and associated crossing over during plasmid gap repair in nuclease-deficient strains of Saccharomyces cerevisiae Lorraine S. Symington, Leslie E. Kang, and Sylvie Moreau PMCID: PMC115160 Nucleotide-sequence-specific and non-specific interactions of T4 DNA polymerase with its own mRNA Andrey R. Pavlov and Jim D. Karam PMCID: PMC115167 Signaling through regulated transcription factor interaction: mapping of a regulatory interaction domain in the Myb-related Bas1p Benoît Pinson, Torill L. Kongsrud, Eli Ording, Lena Johansen, Bertrand Daignan-Fornier, and Odd S. Gabrielsen PMCID: PMC115155 Transcription-coupled repair is inducible in hamster cells Maryse Germanier, Martine Defais, Vilhelm A. Bohr, and Florence Larminat PMCID: PMC115179 A unique pattern of intrastrand anomalies in base composition of the DNA in hypotrichs David M. Prescott and Sarah J. Dizick PMCID: PMC115164 CIRP2, a major cytoplasmic RNA-binding protein in Xenopus oocytes Ken Matsumoto, Kazuma Aoki, Naoshi Dohmae, Koji Takio, and Masafumi Tsujimoto PMCID: PMC115157 Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA Jan Wuyts, Peter De Rijk, Yves Van de Peer, Greet Pison, Peter Rousseeuw, and Rupert De Wachter PMCID: PMC115172 Fission yeast retrotransposon Tf1 integration is targeted to 5′ ends of open reading frames Ralf Behrens, Jacky Hayles, and Paul Nurse PMCID: PMC115174 Error-prone lesion bypass by human DNA polymerase η Yanbin Zhang, Fenghua Yuan, Xiaohua Wu, Olga Rechkoblit, John-Stephen Taylor, Nicholas E. Geacintov, and Zhigang Wang PMCID: PMC115171 Sequestration of specific tRNA species cognate to the last sense codon of an overproduced gratuitous protein Jeanne Menez, Valérie Heurgué-Hamard, and Richard H. Buckingham PMCID: PMC115180 Telomere-binding and Stn1p-interacting activities are required for the essential function of Saccharomyces cerevisiae Cdc13p Mei-Jung Wang, Yi-Chien Lin, Te-Ling Pang, Jui-Mei Lee, Chia-Ching Chou, and Jing-Jer Lin PMCID: PMC115178 Species specificity of human RPA in simian virus 40 DNA replication lies in T-antigen-dependent RNA primer synthesis Mu Wang, Jang-Su Park, Masamichi Ishiai, Jerard Hurwitz, and Suk-Hee Lee PMCID: PMC115162 Mitochondrial RNAs of myxomycetes terminate with non-encoded 3′ poly(U) tails Tamara L. Horton and Laura F. Landweber PMCID: PMC115168 Cis-acting influences on Alu RNA levels Claudina Alemán, Astrid M. Roy-Engel, Tamim H. Shaikh, and Prescott L. Deininger PMCID: PMC115182 Transition characteristics and thermodynamic analysis of DNA duplex formation: a quantitative consideration for the extent of duplex association Peng Wu and Naoki Sugimoto PMCID: PMC115173 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G2 phase Masako Izumi, Ken-ichiro Yanagi, Takeshi Mizuno, Masayuki Yokoi, Yasuo Kawasaki, Kyeong-Yeop Moon, Jerard Hurwitz, Fumio Yatagai, and Fumio Hanaoka PMCID: PMC115166 A Ku80 fragment with dominant negative activity imparts a radiosensitive phenotype to CHO-K1 cells Elisabetta Marangoni, Nicolas Foray, Mark O’Driscoll, Sétha Douc-Rasy, Jacques Bernier, Jean Bourhis, and Penny Jeggo PMCID: PMC115156 Essential regions of the tRNA primer required for HIV-1 infectivity Qin Yu and Casey D. Morrow PMCID: PMC115161 DNA binding and transcription activation by chicken interferon regulatory factor-3 (chIRF-3) Caroline E. Grant, Donna L. May, and Roger G. Deeley PMCID: PMC115154 Differential processing of UV mimetic and interstrand crosslink damage by XPF cell extracts Nianxiang Zhang, Xiaoshan Zhang, Carolyn Peterson, Lei Li, and Randy Legerski PMCID: PMC115165 Enhanced flexibility and aphidicolin-induced DNA breaks near mammalian replication origins: implications for replicon mapping and chromosome fragility Franck Toledo, Arnaud Coquelle, Ekaterina Svetlova, and Michelle Debatisse PMCID: PMC115181 NAR Methods Online Inducible and irreversible control of gene expression using a single transgene Edya Fuhrmann-Benzakein, Irène García-Gabay, Michael S. Pepper, Jean-Dominique Vassalli, and Pedro Luis Herrera PMCID: PMC115183 Full flexibility genotyping of single nucleotide polymorphisms by the GOOD assay Sascha Sauer, Doris Lechner, Kurt Berlin, Christine Plançon, Arno Heuermann, Hans Lehrach, and Ivo Glynne Gut PMCID: PMC115184 Novel splice variants of cyclin E with altered substrate specificity Donald C. Porter and Khandan Keyomarsi PMCID: PMC115185 Design and calibration of a semi-synthetic DNA phasing assay Philip R. Hardwidge, Jeff M. Zimmerman, and L. James Maher, III PMCID: PMC115186 Mapping dispersed repetitive loci using semi-specific PCR cloning and somatic cell hybrid mapping Yi-Mo Deng, Jun-Heon Lee, Chris Moran, Jun-Hua Jin, Bernard E. Tuch, and William D. Rawlinson PMCID: PMC115187 Towards integrating vectors for gene therapy: expression of functional bacteriophage MuA and MuB proteins in mammalian cells F. H. E. Schagen, H. J. Rademaker, S. J. Cramer, H. van Ormondt, A. J. van der Eb, P. van de Putte, and R. C. Hoeben PMCID: PMC115188 |
