| | Articles Position-specific effect of ribonucleotides on the cleavage activity of human topoisomerase II Yong Wang, Anette Thyssen, Ole Westergaard, and Anni H. Andersen PMCID: PMC115230 Role of SR protein modular domains in alternative splicing specificity in vivo Willemien van der Houven van Oordt, Kathryn Newton, Gavin R. Screaton, and Javier F. Cáceres PMCID: PMC115228 Interaction of human DNA topoisomerase I with G-quartet structures Paola B. Arimondo, Jean-François Riou, Jean-Louis Mergny, Jamal Tazi, Jian-Sheng Sun, Thérèse Garestier, and Claude Hélène PMCID: PMC115246 The 26S proteasome negatively regulates the level of overall genomic nucleotide excision repair Lori Lommel, Li Chen, Kiran Madura, and Kevin Sweder PMCID: PMC115242 Characterization of the B lymphocyte-induced maturation protein-1 (Blimp-1) gene, mRNA isoforms and basal promoter Chainarong Tunyaplin, Miriam A. Shapiro, and Kathryn L. Calame PMCID: PMC115243 Mechanisms of DNA cleavage by copper complexes of 3-Clip-Phen and of its conjugate with a distamycin analogue Marguerite Pitié, Cynthia J. Burrows, and Bernard Meunier PMCID: PMC115237 A novel four zinc-finger protein targeted against p190BcrAbl fusion oncogene cDNA: utilisation of zinc-finger recognition codes Andrew R. McNamara and Kevin G. Ford PMCID: PMC115248 Misincorporation of 2′-deoxyoxanosine into DNA: a molecular basis for NO-induced mutagenesis derived from theoretical calculations Begoña Hernández, Robert Soliva, F. Javier Luque, and Modesto Orozco PMCID: PMC115229 Rapid microtiter assays for poxvirus topoisomerase, mammalian type IB topoisomerase and HIV-1 integrase: application to inhibitor isolation Young Hwang, Denise Rhodes, and Frederic Bushman PMCID: PMC115247 Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)2 B↔A intermediate crystal structure Jirí Šponer, Jan Florián, Ho-Leung Ng, Judit E. Šponer, and Nad’a Špacková PMCID: PMC115231 Differential requirements for cis and trans V(D)J cleavage: effects of substrate length Leslie E. Huye and David B. Roth PMCID: PMC115234 Adenine excisional repair function of MYH protein on the adenine:8-hydroxyguanine base pair in double-stranded DNA Kazuya Shinmura, Satoru Yamaguchi, Takayuki Saitoh, Mariko Takeuchi-Sasaki, Su-Ryang Kim, Takehiko Nohmi, and Jun Yokota PMCID: PMC115236 The SP1 sites of the human apoCIII enhancer are essential for the expression of the apoCIII gene and contribute to the hepatic and intestinal expression of the apoA-I gene in transgenic mice Spiros Georgopoulos, Horng-Yuan Kan, Catherine Reardon-Alulis, and Vassilis Zannis PMCID: PMC115241 Alleviating transcript insufficiency caused by Friedreich’s ataxia triplet repeats Ed Grabczyk and Karen Usdin PMCID: PMC115239 Improved statistical methods reveal direct interactions between 16S and 23S rRNA Scott T. Kelley, Viatcheslav R. Akmaev, and Gary D. Stormo PMCID: PMC115233 Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide Riccardo Nifosì, Carolina M. Reyes, and Peter A. Kollman PMCID: PMC115235 A role for MHR1, a gene required for mitochondrial genetic recombination, in the repair of damage spontaneously introduced in yeast mtDNA Feng Ling, Hiroshi Morioka, Eiko Ohtsuka, and Takehiko Shibata PMCID: PMC115238 Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP–AlF4: implications for decreased ATPase activity and molecular aggregation S. Datta, M. M. Prabu, M. B. Vaze, N. Ganesh, Nagasuma R. Chandra, K. Muniyappa, and M. Vijayan PMCID: PMC115232 Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, Typhimurium, Typhi and Paratyphi Michael McClelland, Liliana Florea, Ken Sanderson, Sandra W. Clifton, Julian Parkhill, Carol Churcher, Gordon Dougan, Richard K. Wilson, and Webb Miller PMCID: PMC115240 CHOP gene expression in response to endoplasmic-reticular stress requires NFY interaction with different domains of a conserved DNA-binding element Mariano Ubeda and Joel F. Habener PMCID: PMC115245 Quantitative analysis of globin gene induction in single human erythroleukemic cells Reginald D. Smith, James D. Malley, and Alan N. Schechter PMCID: PMC115244 NAR Methods Online TE-AFLP: combining rapidity and robustness in DNA fingerprinting A. W. G. van der Wurff, Y. L. Chan, N. M. van Straalen, and J. Schouten PMCID: PMC115249 Non-gridded library: a new approach for BAC (bacterial artificial chromosome) exploitation in hexaploid wheat (Triticum aestivum) Zhiying Ma, Song Weining, Peter J. Sharp, and Chunji Liu PMCID: PMC115250 Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization Yukio Okamura, Satoshi Kondo, Ichiro Sase, Takayuki Suga, Kazuyuki Mise, Iwao Furusawa, Shigeki Kawakami, and Yuichiro Watanabe PMCID: PMC115251 Controlling gene expression in yeast by inducible site-specific recombination Tzu-Hao Cheng, Chuang-Rung Chang, Prabha Joy, Svetlana Yablok, and Marc R. Gartenberg PMCID: PMC115252 |
