| | Articles Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme Nidhanapati K. Raghavendra and Desirazu N. Rao PMCID: PMC528788 Plasmodium interspersed repeats: the major multigene superfamily of malaria parasites Christoph S. Janssen, R. Stephen Phillips, C. Michael R. Turner, and Michael P. Barrett PMCID: PMC528792 Two clustered 8-oxo-7,8-dihydroguanine (8-oxodG) lesions increase the point mutation frequency of 8-oxodG, but do not result in double strand breaks or deletions in Escherichia coli Svitlana Malyarchuk, Katherine L. Brame, Reneau Youngblood, Runhua Shi, and Lynn Harrison PMCID: PMC528796 Guanosine tetra- and pentaphosphate synthase activity in chloroplasts of a higher plant: association with 70S ribosomes and inhibition by tetracycline Koji Kasai, Takuya Kanno, Yaeta Endo, Kyo Wakasa, and Yuzuru Tozawa PMCID: PMC528801 Dnmt1 deficiency leads to enhanced microsatellite instability in mouse embryonic stem cells Myungjin Kim, Binh N. Trinh, Tiffany I. Long, Shirley Oghamian, and Peter W. Laird PMCID: PMC528797 Multiple defects in translation associated with altered ribosomal protein L4 Michael O'Connor, Steven T. Gregory, and Albert E. Dahlberg PMCID: PMC528798 Application of locked nucleic acids to improve aptamer in vivo stability and targeting function Kathrin S. Schmidt, Sandra Borkowski, Jens Kurreck, Andrew W. Stephens, Rolf Bald, Maren Hecht, Matthias Friebe, Ludger Dinkelborg, and Volker A. Erdmann PMCID: PMC528785 Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium Valérie Barbe, David Vallenet, Nuria Fonknechten, Annett Kreimeyer, Sophie Oztas, Laurent Labarre, Stéphane Cruveiller, Catherine Robert, Simone Duprat, Patrick Wincker, L. Nicholas Ornston, Jean Weissenbach, Philippe Marlière, Georges N. Cohen, and Claudine Médigue PMCID: PMC528795 Acinetobacter sp. ADP1: an ideal model organism for genetic analysis and genome engineering David Metzgar, Jamie M. Bacher, Valérie Pezo, John Reader, Volker Döring, Paul Schimmel, Philippe Marlière, and Valérie de Crécy-Lagard PMCID: PMC528786 Oxetane modified, conformationally constrained, antisense oligodeoxyribonucleotides function efficiently as gene silencing molecules J. B. Opalinska, A. Kalota, Lida K. Gifford, Ponzy Lu, Kuang-Yu Jen, P. I. Pradeepkumar, J. Barman, T. K. Kim, C. R. Swider, J. Chattopadhyaya, and A. M. Gewirtz PMCID: PMC528787 Complex patterns of transcription at the insertion site of a retrotransposon in the mouse Riki Druker, Timothy James Bruxner, Nicolas John Lehrbach, and Emma Whitelaw PMCID: PMC528799 Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii 7 Naoto Ohtani, Hiroshi Yanagawa, Masaru Tomita, and Mitsuhiro Itaya PMCID: PMC528802 REV1 accumulates in DNA damage-induced nuclear foci in human cells and is implicated in mutagenesis by benzo[a]pyrenediolepoxide Suparna Mukhopadhyay, Denise R. Clark, Nicholas B. Watson, Wolfgang Zacharias, and W. Glenn McGregor PMCID: PMC528789 U3 snoRNP and Rrp5p associate independently with Saccharomyces cerevisiae 35S pre-rRNA, but Rrp5p is essential for association of Rok1p Harmjan R. Vos, Ralph Bax, Alex W. Faber, Jan C. Vos, and Hendrik A. Raué PMCID: PMC528790 Core promoter elements of eukaryotic genes have a highly distinctive mechanical property Yoshiro Fukue, Noriyuki Sumida, Jun-ichi Nishikawa, and Takashi Ohyama PMCID: PMC528791 Alleviation of restriction by DNA condensation and non-specific DNA binding ligands Steven A. Keatch, Tsueu-Ju Su, and David T. F. Dryden PMCID: PMC528803 CTD kinase I is involved in RNA polymerase I transcription Céline Bouchoux, Guillaume Hautbergue, Sabrina Grenetier, Christophe Carles, Michel Riva, and Valérie Goguel PMCID: PMC528809 Overexpression of human DNA polymerase μ (Pol μ) in a Burkitt's lymphoma cell line affects the somatic hypermutation rate José F. Ruiz, Daniel Lucas, Esther García-Palomero, Ana I. Saez, Manuel A. González, Miguel A. Piris, Antonio Bernad, and Luis Blanco PMCID: PMC528811 Identification of the CRP regulon using in vitro and in vivo transcriptional profiling Dongling Zheng, Chrystala Constantinidou, Jon L. Hobman, and Stephen D. Minchin PMCID: PMC528793 Domain organization of the yeast histone chaperone FACT: the conserved N-terminal domain of FACT subunit Spt16 mediates recovery from replication stress Allyson F. O'Donnell, Neil K. Brewster, Joelius Kurniawan, Laura V. Minard, Gerald C. Johnston, and Richard A. Singer PMCID: PMC528806 Centromere parC of plasmid R1 is curved Christian Hoischen, Alexander Bolshoy, Kenn Gerdes, and Stephan Diekmann PMCID: PMC528805 Cis-acting regulatory sequences promote high-frequency gene conversion between repeated sequences in mammalian cells Steven J. Raynard and Mark D. Baker PMCID: PMC528808 Futile short-patch DNA base excision repair of adenine:8-oxoguanine mispair Keiji Hashimoto, Yohei Tominaga, Yusaku Nakabeppu, and Masaaki Moriya PMCID: PMC528794 DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus Pierpaolo Ceci, Sara Cellai, Elisabetta Falvo, Claudio Rivetti, Gian Luigi Rossi, and Emilia Chiancone PMCID: PMC528800 Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms S. Thiyagarajan, S. S. Rajan, and N. Gautham PMCID: PMC528804 Testing the conservation of the translational machinery over evolution in diverse environments: assaying Thermus thermophilus ribosomes and initiation factors in a coupled transcription–translation system from Escherichia coli Jill Thompson and Albert E. Dahlberg PMCID: PMC528807 Replication-mediated instability of the GAA triplet repeat mutation in Friedreich ataxia Laura M. Pollard, Rajesh Sharma, Mariluz Gómez, Sonali Shah, Martin B. Delatycki, Luigi Pianese, Antonella Monticelli, Bronya J.B. Keats, and Sanjay I. Bidichandani PMCID: PMC528813 NAR Methods Online Subcellular localization as a limiting factor for utilization of decoy oligonucleotides Anca Bene, Richard C. Kurten, and Timothy C. Chambers PMCID: PMC528816 A rapid and efficient method to generate multiple gene disruptions in Dictyostelium discoideum using a single selectable marker and the Cre-loxP system Jan Faix, Lisa Kreppel, Gad Shaulsky, Michael Schleicher, and Alan R. Kimmel PMCID: PMC528815 Reversibly switchable DNA nanocompartment on surfaces Youdong Mao, Chunxiong Luo, Wei Deng, Guangyin Jin, Xiaomei Yu, Zhaohui Zhang, Qi Ouyang, Runsheng Chen, and Dapeng Yu PMCID: PMC528821 One-step random mutagenesis by error-prone rolling circle amplification Ryota Fujii, Motomitsu Kitaoka, and Kiyoshi Hayashi PMCID: PMC528823 Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH Joana Cardoso, Lia Molenaar, Renée X. de Menezes, Carla Rosenberg, Hans Morreau, Gabriela Möslein, Riccardo Fodde, and Judith M. Boer PMCID: PMC528818 Hypervariable genes—experimental error or hidden dynamics Igor Dozmorov, Nicholas Knowlton, Yuhong Tang, Alan Shields, Parima Pathipvanich, James N. Jarvis, and Michael Centola PMCID: PMC528822 High sensitivity EndoV mutation scanning through real-time ligase proofreading Hanna Pincas, Maneesh R. Pingle, Jianmin Huang, Kaiqin Lao, Philip B. Paty, Alan M. Friedman, and Francis Barany PMCID: PMC528826 Cancer siRNA therapy by tumor selective delivery with ligand-targeted sterically stabilized nanoparticle Raymond M. Schiffelers, Aslam Ansari, Jun Xu, Qin Zhou, Qingquan Tang, Gert Storm, Grietje Molema, Patrick Y. Lu, Puthupparampil V. Scaria, and Martin C. Woodle PMCID: PMC528817 Pattern of genes influenced by conditional expression of the transcription factors HNF6, HNF4α and HNF1β in a pancreatic β-cell line Heike Thomas, Sabine Senkel, Silke Erdmann, Tanja Arndt, Gülüzar Turan, Ludger Klein-Hitpass, and Gerhart U. Ryffel PMCID: PMC528820 Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo Joseph V. Geisberg and Kevin Struhl PMCID: PMC528824 Small circular DNAs for synthesis of the human telomere repeat: varied sizes, structures and telomere-encoding activities Jörg S. Hartig and Eric T. Kool PMCID: PMC528825 Site-selective and hydrolytic two-strand scission of double-stranded DNA using Ce(IV)/EDTA and pseudo-complementary PNA Yoji Yamamoto, Akihiko Uehara, Takafumi Tomita, and Makoto Komiyama PMCID: PMC528827 Optical absorption assay for strand-exchange reactions in unlabeled nucleic acids Besik I. Kankia PMCID: PMC528828 A method for cloning and sequencing long palindromic DNA junctions Alison J. Rattray PMCID: PMC528819 A FRET-based analysis of SNPs without fluorescent probes Kyoko Takatsu, Toyokazu Yokomaku, Shinya Kurata, and Takahiro Kanagawa PMCID: PMC528829 Corrigenda Nucleic Acids Res. 2004; 32(19): 5972. Published online 2004 November 8. doi: 10.1093/nar/gkh928.PMCID: PMC528810 Corrects: Li-Xuan Qin, et al. Empirical evaluation of data transformations and ranking statistics for microarray analysis. Nucleic Acids Res. 2004; 32(18): 5471–5479. Nucleic Acids Res. 2004; 32(19): 5972. Published online 2004 November 8. doi: 10.1093/nar/gkh930.PMCID: PMC528812 Corrects: Dilip K. Nag, et al. Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae. Nucleic Acids Res. 2004; 32(18): 5677–5684. Nucleic Acids Res. 2004; 32(19): 5972. Published online 2004 November 8. doi: 10.1093/nar/gkh938.PMCID: PMC528814 Corrects: Leonardo Mariño-Ramírez, et al. Statistical analysis of over-represented words in human promoter sequences. Nucleic Acids Res. 2004; 32(3): 949–958. |
