| | Survey and Summary Mitochondrial tRNA 3′ end metabolism and human disease Louis Levinger, Mario Mörl, and Catherine Florentz PMCID: PMC524294 ‘Conserved hypothetical’ proteins: prioritization of targets for experimental study Michael Y. Galperin and Eugene V. Koonin PMCID: PMC524295 Articles Human MutL homolog (MLH1) function in DNA mismatch repair: a prospective screen for missense mutations in the ATPase domain Aaron R. Ellison, Joan Lofing, and Grant A. Bitter PMCID: PMC524276 A novel Nudix hydrolase for oxidized purine nucleoside triphosphates encoded by ORFYLR151c (PCD1 gene) in Saccharomyces cerevisiae Tatsuo Nunoshiba, Rikiya Ishida, Michi Sasaki, Shigenori Iwai, Yusaku Nakabeppu, and Kazuo Yamamoto PMCID: PMC524280 A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication Nolwenn Le Meur, Guillaume Lamirault, Audrey Bihouée, Marja Steenman, Hélène Bédrine-Ferran, Raluca Teusan, Gérard Ramstein, and Jean J. Léger PMCID: PMC524282 Intramolecular quadruplex conformation of human telomeric DNA assessed with 125I-radioprobing Yujian He, Ronald D. Neumann, and Igor G. Panyutin PMCID: PMC524286 Identification of novel Myc target genes with a potential role in lymphomagenesis Dragan Marinkovic, Tatjana Marinkovic, Eniko Kokai, Thomas Barth, Peter Möller, and Thomas Wirth PMCID: PMC524288 A high resolution protein interaction map of the yeast Mediator complex Benjamin Guglielmi, Nynke L. van Berkum, Benjamin Klapholz, Theo Bijma, Muriel Boube, Claire Boschiero, Henri-Marc Bourbon, Frank C. P. Holstege, and Michel Werner PMCID: PMC524289 Conservation of adjacency as evidence of paralogous operons Sarath Chandra Janga and Gabriel Moreno-Hagelsieb PMCID: PMC524292 Biochemical evidence of translational infidelity and decreased peptidyltransferase activity by a sarcin/ricin domain mutation of yeast 25S rRNA Panagiotis Panopoulos, John Dresios, and Dennis Synetos PMCID: PMC524277 Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences Xiaochuan Zhou, Shiying Cai, Ailing Hong, Qimin You, Peilin Yu, Nijing Sheng, Onnop Srivannavit, Seema Muranjan, Jean Marie Rouillard, Yongmei Xia, Xiaolin Zhang, Qin Xiang, Renuka Ganesh, Qi Zhu, Anna Matejko, Erdogan Gulari, and Xiaolian Gao PMCID: PMC524290 Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage Mathias Brännvall, Ema Kikovska, and Leif A. Kirsebom PMCID: PMC524293 Substrate recognition and catalysis by the Holliday junction resolving enzyme Hje Claire L. Middleton, Joanne L. Parker, Derek J. Richard, Malcolm F. White, and Charles S. Bond PMCID: PMC524281 Interaction of mitochondrial initiation factor 2 with mitochondrial fMet-tRNA Angela C. Spencer and Linda L. Spremulli PMCID: PMC524296 Empirical evaluation of data transformations and ranking statistics for microarray analysis Li-Xuan Qin and Kathleen F. Kerr PMCID: PMC524279 A comprehensive comparison of DNA replication past 2-deoxyribose and its tetrahydrofuran analog in Escherichia coli Kelly M. Kroeger, Myron F. Goodman, and Marc M. Greenberg PMCID: PMC524285 Repair of U/G and U/A in DNA by UNG2-associated repair complexes takes place predominantly by short-patch repair both in proliferating and growth-arrested cells Mansour Akbari, Marit Otterlei, Javier Peña-Diaz, Per Arne Aas, Bodil Kavli, Nina B. Liabakk, Lars Hagen, Kohsuke Imai, Anne Durandy, Geir Slupphaug, and Hans E. Krokan PMCID: PMC524284 Non-hypoxic transcriptional activation of the aryl hydrocarbon receptor nuclear translocator in concert with a novel hypoxia-inducible factor-1alpha isoform Kyoung-Hwa Lee, Jong-Wan Park, and Yang-Sook Chun PMCID: PMC524291 The A2453-C2499 wobble base pair in Escherichia coli 23S ribosomal RNA is responsible for pH sensitivity of the peptidyltransferase active site conformation Mark A. Bayfield, Jill Thompson, and Albert E. Dahlberg PMCID: PMC524298 Electrostatic analysis of the hepatitis C virus NS3 helicase reveals both active and allosteric site locations David N. Frick, Ryan S. Rypma, Angela M. I. Lam, and Christopher M. Frenz PMCID: PMC524300 Transcriptional control of SV40 T-antigen expression allows a complete reversion of immortalization Tobias May, Hansjörg Hauser, and Dagmar Wirth PMCID: PMC524297 The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes Andreas Ruepp, Alfred Zollner, Dieter Maier, Kaj Albermann, Jean Hani, Martin Mokrejs, Igor Tetko, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, and H. Werner Mewes PMCID: PMC524302 Differential recognition by the tumor suppressor protein p53 of DNA modified by the novel antitumor trinuclear platinum drug BBR3464 and cisplatin Jana Kasparkova, Miroslav Fojta, Nicholas Farrell, and Viktor Brabec PMCID: PMC524304 Protein kinase CK2 phosphorylation regulates the interaction of Kaposi's sarcoma-associated herpesvirus regulatory protein ORF57 with its multifunctional partner hnRNP K Poonam Malik and J. Barklie Clements PMCID: PMC524287 DNA repair by a Rad22–Mus81-dependent pathway that is independent of Rhp51 Claudette L. Doe, Fekret Osman, Julie Dixon, and Matthew C. Whitby PMCID: PMC524275 The sequences and activities of RegB endoribonucleases of T4-related bacteriophages Lina Piešiniene, Lidija Truncaite, Aurelija Zajančkauskaite, and Rimas Nivinskas PMCID: PMC524301 The C-terminal αO helix of human Ogg1 is essential for 8-oxoguanine DNA glycosylase activity: the mitochondrial β-Ogg1 lacks this domain and does not have glycosylase activity K. Hashiguchi, J. A. Stuart, N. C. de Souza-Pinto, and V. A. Bohr PMCID: PMC524278 Processing of bistranded abasic DNA clusters in γ-irradiated human hematopoietic cells Alexandros G. Georgakilas, Paula V. Bennett, David M. Wilson, III, and Betsy M. Sutherland PMCID: PMC524283 Structural organization of mRNA complexes with major core mRNP protein YB-1 Maxim A. Skabkin, Olga I. Kiselyova, Konstantin G. Chernov, Alexey V. Sorokin, Evgeniy V. Dubrovin, Igor V. Yaminsky, Victor D. Vasiliev, and Lev P. Ovchinnikov PMCID: PMC524299 Characterization of dRFX2, a novel RFX family protein in Drosophila Kyoko Otsuki, Yuko Hayashi, Masaki Kato, Hideki Yoshida, and Masamitsu Yamaguchi PMCID: PMC524303 Pyridoxal 5′-phosphate inactivates DNA topoisomerase IB by modifying the lysine general acid Jacqueline J. Vermeersch, Serge Christmann-Franck, Leon V. Karabashyan, Serge Fermandjian, Gilles Mirambeau, and P. Arsène Der Garabedian PMCID: PMC524305 Concerted bis-alkylating reactivity of clerocidin towards unpaired cytosine residues in DNA Sara N. Richter, Ileana Menegazzo, Daniele Fabris, and Manlio Palumbo PMCID: PMC524306 Mutually exclusive recombination of wild-type and mutant loxP sites in vivo facilitates transposon-mediated deletions from both ends of genomic DNA in PACs Pradeep K. Chatterjee, Leighcraft A. Shakes, Deepak K. Srivastava, Douglas M. Garland, Ken R. Harewood, Kyle J. Moore, and Jonathon S. Coren PMCID: PMC524307 Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae Dilip K. Nag, Manisha Suri, and Erin K. Stenson PMCID: PMC524308 Enhancement of camptothecin-induced topoisomerase I cleavage complexes by the acetaldehyde adduct N2-ethyl-2′-deoxyguanosine Smitha Antony, Jacob A. Theruvathu, P. J. Brooks, Diem-Thu Lesher, Matt Redinbo, and Yves Pommier PMCID: PMC524309 Expression profiles frame the promoter specificity dilemma of the ETS family of transcription factors Peter C. Hollenhorst, David A. Jones, and Barbara J. Graves PMCID: PMC524310 NAR Methods Online Gold nanoparticle probe-based gene expression analysis with unamplified total human RNA Martin Huber, Tai-Fen Wei, Uwe R. Müller, Phil A. Lefebvre, Sudhakar S. Marla, and Y. Paul Bao PMCID: PMC524311 KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system V. Chin, V. Valinluck, S. Magaki, and J. Ryu PMCID: PMC524312 Multiplex PCR/liquid chromatography assay for detection of gene rearrangements: application to RB1 gene C. Dehainault, A. Laugé, V. Caux-Moncoutier, S. Pagès-Berhouet, F. Doz, L. Desjardins, J. Couturier, M. Gauthier-Villars, D. Stoppa-Lyonnet, and C. Houdayer PMCID: PMC524313 Joining of long double-stranded RNA molecules through controlled overhangs N. H. Dekker, J. A. Abels, P. T. M. Veenhuizen, M. M. Bruinink, and C. Dekker PMCID: PMC524314 A novel method of identifying genetic mutations using an electrochemical DNA array Junko Wakai, Atsuko Takagi, Masato Nakayama, Takahito Miya, Takatoshi Miyahara, Tsuyoshi Iwanaga, Shigeori Takenaka, Yasuyuki Ikeda, and Masahiko Amano PMCID: PMC524315 |
