pmc logo imageJournal ListSearchpmc logo image
Logo of prosciProtein ScienceCSHL PressJournal HomeSubscriptionseTOC AlertsThe Protein Society
This journal provides immediate access to some articles.
Other Issues:  previous | next | latest | archive
Volume 13(6);  June 2004
Review
The ankyrin repeat as molecular architecture for protein recognition
Leila K. Mosavi, Tobin J. Cammett, Daniel C. Desrosiers, and Zheng-yu Peng
Protein Sci. 2004 June; 13(6): 1435–1448. doi: 10.1110/ps.03554604.
PMCID: PMC2279977
Articles
Activation and inhibition of cyclin-dependent kinase-2 by phosphorylation; a molecular dynamics study reveals the functional importance of the glycine-rich loop
Iveta Bártová, Michal Otyepka, Zdeněk Kříž, and Jaroslav Koča
Protein Sci. 2004 June; 13(6): 1449–1457. doi: 10.1110/ps.03578504.
PMCID: PMC2279985
Solution structure of the hypothetical protein Mth677 from Methanobacterium thermoautotrophicum: A novel α+β fold
Francisco J. Blanco, Adelinda Yee, Ramón Campos-Olivas, Ángel R. Ortiz, Demian Devos, Alfonso Valencia, Cheryl H. Arrowsmith, and Manuel Rico
Protein Sci. 2004 June; 13(6): 1458–1465. doi: 10.1110/ps.04620504.
PMCID: PMC2279996
Accessibility of introduced cysteines in chemoreceptor transmembrane helices reveals boundaries interior to bracketing charged residues
Thomas Boldog and Gerald L. Hazelbauer
Protein Sci. 2004 June; 13(6): 1466–1475. doi: 10.1110/ps.04648604.
PMCID: PMC2279978
A novel and conserved pocket of human κ-Fab fragments: Design, synthesis, and verification of directed affinity ligands
Enrique Carredano, Herbert Baumann, Anna Grönberg, Nils Norrman, Gunnar Glad, Jinyu Zou, Oguz Ersoy, Elles Steensma, and Andreas Axén
Protein Sci. 2004 June; 13(6): 1476–1488. doi: 10.1110/ps.04687404.
PMCID: PMC2279986
Incorporation of the fluorescent amino acid 7-azatryptophan into the core domain 1–47 of hirudin as a probe of hirudin folding and thrombin recognition
Vincenzo De Filippis, Silvia De Boni, Elisa De Dea, Daniele Dalzoppo, Claudio Grandi, and Angelo Fontana
Protein Sci. 2004 June; 13(6): 1489–1502. doi: 10.1110/ps.03542104.
PMCID: PMC2279979
High resolution crystallographic studies of α-hemolysin–phospholipid complexes define heptamer–lipid head group interactions: Implication for understanding protein–lipid interactions
Stefania Galdiero and Eric Gouaux
Protein Sci. 2004 June; 13(6): 1503–1511. doi: 10.1110/ps.03561104.
PMCID: PMC2279993
The dimerization domain of the HIV-1 capsid protein binds a capsid protein-derived peptide: A biophysical characterization
María T. Garzón, María C. Lidón-Moya, Francisco N. Barrera, Alicia Prieto, Javier Gómez, Mauricio G. Mateu, and José L. Neira
Protein Sci. 2004 June; 13(6): 1512–1523. doi: 10.1110/ps.03555304.
PMCID: PMC2279969
Theoretical study of interaction of winter flounder antifreeze protein with ice
Alexander Jorov, Boris S. Zhorov, and Daniel S.C. Yang
Protein Sci. 2004 June; 13(6): 1524–1537. doi: 10.1110/ps.04641104.
PMCID: PMC2279984
Pressure dissociation studies provide insight into oligomerization competence of temperature-sensitive folding mutants of P22 tailspike
Brian G. Lefebvre, Noelle K. Comolli, Matthew J. Gage, and Anne Skaja Robinson
Protein Sci. 2004 June; 13(6): 1538–1546. doi: 10.1110/ps.03579304.
PMCID: PMC2279998
The ternary complex of Pseudomonas aeruginosa alcohol dehydrogenase with NADH and ethylene glycol
Inna Levin, Gal Meiri, Moshe Peretz, Yigal Burstein, and Felix Frolow
Protein Sci. 2004 June; 13(6): 1547–1556. doi: 10.1110/ps.03531404.
PMCID: PMC2279990
The structure of Ski8p, a protein regulating mRNA degradation: Implications for WD protein structure
A. Yarrow Madrona and David K. Wilson
Protein Sci. 2004 June; 13(6): 1557–1565. doi: 10.1110/ps.04704704.
PMCID: PMC2279974
Modification of halogen specificity of a vanadium-dependent bromoperoxidase
Takashi Ohshiro, Jennifer Littlechild, Esther Garcia-Rodriguez, Michail N. Isupov, Yasuaki Iida, Takushi Kobayashi, and Yoshikazu Izumi
Protein Sci. 2004 June; 13(6): 1566–1571. doi: 10.1110/ps.03496004.
PMCID: PMC2279980
Modulation of the structural integrity of helix F in apomyoglobin by single amino acid replacements
Paola Picotti, Anna Marabotti, Alessandro Negro, Valeria Musi, Barbara Spolaore, Marcello Zambonin, and Angelo Fontana
Protein Sci. 2004 June; 13(6): 1572–1585. doi: 10.1110/ps.04635304.
PMCID: PMC2279989
Heterodimers of wild-type and subunit interface mutant enzymes of glutathione S-transferase A1–1: Interactive or independent active sites?
Melissa A. Vargo and Roberta F. Colman
Protein Sci. 2004 June; 13(6): 1586–1593. doi: 10.1110/ps.04694004.
PMCID: PMC2279973
Sequence-structure mapping errors in the PDB: OB-fold domains
Česlovas Venclovas, Krzysztof Ginalski, and Chulhee Kang
Protein Sci. 2004 June; 13(6): 1594–1602. doi: 10.1110/ps.04634604.
PMCID: PMC2279972
Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3
Daniel Walker, Lorna Lancaster, Richard James, and Colin Kleanthous
Protein Sci. 2004 June; 13(6): 1603–1611. doi: 10.1110/ps.04658504.
PMCID: PMC2279995
Scoring profile-to-profile sequence alignments
Guoli Wang and Roland L. Dunbrack, Jr.
Protein Sci. 2004 June; 13(6): 1612–1626. doi: 10.1110/ps.03601504.
PMCID: PMC2279992
Identification of the N-glycosylation sites on glutamate carboxypeptidase II necessary for proteolytic activity
Cyril Barinka, Pavel Šácha, Jan Sklenář, Petr Man, Karel Bezouška, Barbara S. Slusher, and Jan Konvalinka
Protein Sci. 2004 June; 13(6): 1627–1635. doi: 10.1110/ps.04622104.
PMCID: PMC2279971
Some fundamental aspects of building protein structures from fragment libraries
J. Bradley Holmes and Jerry Tsai
Protein Sci. 2004 June; 13(6): 1636–1650. doi: 10.1110/ps.03494504.
PMCID: PMC2279988
New enzymes from environmental cassette arrays: Functional attributes of a phosphotransferase and an RNA-methyltransferase
Blair S. Nield, Robert D. Willows, Andrew E. Torda, Michael R. Gillings, Andrew J. Holmes, K.M. Helena Nevalainen, H.W. Stokes, and Bridget C. Mabbutt
Protein Sci. 2004 June; 13(6): 1651–1659. doi: 10.1110/ps.04638704.
PMCID: PMC2279982
Realistic protein–protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness
Maximilian Schlosshauer and David Baker
Protein Sci. 2004 June; 13(6): 1660–1669. doi: 10.1110/ps.03517304.
PMCID: PMC2279981
For the Record
Replacement of proline with valine does not remove an apparent proline isomerization-dependent folding event in CRABP I
Lora L. Burns-Hamuro, Paula M. Dalessio, and Ira J. Ropson
Protein Sci. 2004 June; 13(6): 1670–1676. doi: 10.1110/ps.03317804.
PMCID: PMC2279983
Production of a fully functional, permuted single-chain penicillin G acylase
Gabriela Flores, Xavier Soberón, and Joel Osuna
Protein Sci. 2004 June; 13(6): 1677–1683. doi: 10.1110/ps.03436604.
PMCID: PMC2279987
Structure of a novel c7-type three-heme cytochrome domain from a multidomain cytochrome c polymer
P. Raj Pokkuluri, Yuri Y. Londer, Norma E.C. Duke, Jill Erickson, Miguel Pessanha, Carlos A. Salgueiro, and Marianne Schiffer
Protein Sci. 2004 June; 13(6): 1684–1692. doi: 10.1110/ps.04626204.
PMCID: PMC2279975
Inhibition of the Class II HMG–CoA reductase of Pseudomonas mevalonii
Matija Hedl and Victor W. Rodwell
Protein Sci. 2004 June; 13(6): 1693–1697. doi: 10.1110/ps.03597504.
PMCID: PMC2279991
Two-promoter vector is highly efficient for overproduction of protein complexes
Kyung-Jin Kim, Han-Eol Kim, Kwang-Hoon Lee, Wondeok Han, Min-Ju Yi, Jinseok Jeong, and Byung-Ha Oh
Protein Sci. 2004 June; 13(6): 1698–1703. doi: 10.1110/ps.04644504.
PMCID: PMC2279994
Book Review
Protein misfolding and disease: Principles and protocols. Methods in molecular biology, Vol. 232, edited by P. Bross and N. Gregersen.: 2003. Totowa, New Jersey, USA: Human Press, Inc. 318 pp. $99.50.
Margaret Sunde
Protein Sci. 2004 June; 13(6): 1704–1705. doi: 10.1110/ps.04744304.
PMCID: PMC2279997
Corrections
CORRECTION
Protein Sci. 2004 June; 13(6): 1706.
PMCID: PMC2279976
Corrects: F. M. Richards, et al. Methylene as a possible universal footprinting reagent that will include hydrophobic surface areas: overview and feasibility: properties of diazirine as a precursor. Protein Sci. 2000 December; 9(12): 2506–2517.
CORRECTION
Protein Sci. 2004 June; 13(6): 1706–1707.
PMCID: PMC2279970
Corrects: Barbara Pioselli, et al. Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations. Protein Sci. 2004 April; 13(4): 913–924.
Other Issues:  previous | next | latest | archive