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Volume 14(8);  August 2005
Commentary
The implications of higher (or lower) success in secondary structure prediction of chain fragments
Chung-Jung Tsai and Ruth Nussinov
Protein Sci. 2005 August; 14(8): 1943–1944. doi: 10.1110/ps.051581805.
PMCID: PMC2279305
Review
Remodeling protein complexes: Insights from the AAA+ unfoldase ClpX and Mu transposase
Briana M. Burton and Tania A. Baker
Protein Sci. 2005 August; 14(8): 1945–1954. doi: 10.1110/ps.051417505.
PMCID: PMC2279306
Articles
The effect of long-range interactions on the secondary structure formation of proteins
Daisuke Kihara
Protein Sci. 2005 August; 14(8): 1955–1963. doi: 10.1110/ps.051479505.
PMCID: PMC2279307
Crystal structure of the human vascular adhesion protein-1: Unique structural features with functional implications
Tomi T. Airenne, Yvonne Nymalm, Heidi Kidron, David J. Smith, Marjo Pihlavisto, Marko Salmi, Sirpa Jalkanen, Mark S. Johnson, and Tiina A. Salminen
Protein Sci. 2005 August; 14(8): 1964–1974. doi: 10.1110/ps.051438105.
PMCID: PMC2279308
The intrinsically disordered C-terminal domain of the measles virus nucleoprotein interacts with the C-terminal domain of the phosphoprotein via two distinct sites and remains predominantly unfolded
Jean-Marie Bourhis, Véronique Receveur-Bréchot, Michael Oglesbee, Xinsheng Zhang, Matthew Buccellato, Hervé Darbon, Bruno Canard, Stéphanie Finet, and Sonia Longhi
Protein Sci. 2005 August; 14(8): 1975–1992. doi: 10.1110/ps.051411805.
PMCID: PMC2279309
Crystal structure of Yersinia enterocolitica type III secretion chaperone SycT
Carina R. Büttner, Guy R. Cornelis, Dirk W. Heinz, and Hartmut H. Niemann
Protein Sci. 2005 August; 14(8): 1993–2002. doi: 10.1110/ps.051474605.
PMCID: PMC2279310
Solution structure of APETx2, a specific peptide inhibitor of ASIC3 proton-gated channels
Benjamin Chagot, Pierre Escoubas, Sylvie Diochot, Cédric Bernard, Michel Lazdunski, and Hervé Darbon
Protein Sci. 2005 August; 14(8): 2003–2010. doi: 10.1110/ps.051378905.
PMCID: PMC2279311
A scalable, GFP-based pipeline for membrane protein overexpression screening and purification
David Drew, Dirk-Jan Slotboom, Giulia Friso, Torsten Reda, Pierre Genevaux, Mikaela Rapp, Nadja M. Meindl-Beinker, Wietske Lambert, Mirjam Lerch, Daniel O. Daley, Klaas-Jan Van Wijk, Judy Hirst, Edmund Kunji, and Jan-Willem De Gier
Protein Sci. 2005 August; 14(8): 2011–2017. doi: 10.1110/ps.051466205.
PMCID: PMC2279312
The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and λN interaction
Anke Eisenmann, Sabine Schwarz, Stefan Prasch, Kristian Schweimer, and Paul Rösch
Protein Sci. 2005 August; 14(8): 2018–2029. doi: 10.1110/ps.051372205.
PMCID: PMC2279313
Interdomain side-chain interactions in human γD crystallin influencing folding and stability
Shannon L. Flaugh, Melissa S. Kosinski-Collins, and Jonathan King
Protein Sci. 2005 August; 14(8): 2030–2043. doi: 10.1110/ps.051460505.
PMCID: PMC2279314
Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells
Yong-Guang Gao, Ai-Xin Song, Yan-Hong Shi, Yong-Gang Chang, Shu-Xun Liu, Yi-Zi Yu, Xue-Tao Cao, Dong-Hai Lin, and Hong-Yu Hu
Protein Sci. 2005 August; 14(8): 2044–2050. doi: 10.1110/ps.051455505.
PMCID: PMC2279315
Soluble domains of telomerase reverse transcriptase identified by high-throughput screening
Steven A. Jacobs, Elaine R. Podell, Deborah S. Wuttke, and Thomas R. Cech
Protein Sci. 2005 August; 14(8): 2051–2058. doi: 10.1110/ps.051532105.
PMCID: PMC2279316
Protein–protein interactions as a tool for site-specific labeling of proteins
Marcus Jäger, Xavier Michalet, and Shimon Weiss
Protein Sci. 2005 August; 14(8): 2059–2068. doi: 10.1110/ps.051384705.
PMCID: PMC2279317
Design of enhanced agonists through the use of a new virtual screening method: Application to peptides that bind class I major histocompatibility complex (MHC) molecules
Sergio Madurga, Ignasi Belda, Xavier Llorà, and Ernest Giralt
Protein Sci. 2005 August; 14(8): 2069–2079. doi: 10.1110/ps.051351605.
PMCID: PMC2279318
Structure—function analysis of the α5 and the α13 helices of human glucokinase: Description of two novel activating mutations
Leda Pedelini, Maria Adelaida Garcia-Gimeno, Alberto Marina, Juan M. Gomez-Zumaquero, Pablo Rodriguez-Bada, Soledad López-Enriquez, Federico C. Soriguer, Antonio L. Cuesta-Muñoz, and Pascual Sanz
Protein Sci. 2005 August; 14(8): 2080–2086. doi: 10.1110/ps.051485205.
PMCID: PMC2279319
Crystal structure and substrate specificity of the β-ketoacyl-acyl carrier protein synthase III (FabH) from Staphylococcus aureus
Xiayang Qiu, Anthony E. Choudhry, Cheryl A. Janson, Michael Grooms, Robert A. Daines, John T. Lonsdale, and Sanjay S. Khandekar
Protein Sci. 2005 August; 14(8): 2087–2094. doi: 10.1110/ps.051501605.
PMCID: PMC2279320
Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1
Shanteri Singh, Marco Tonelli, Robert C. Tyler, Arash Bahrami, Min S. Lee, and John L. Markley
Protein Sci. 2005 August; 14(8): 2095–2102. doi: 10.1110/ps.051577605.
PMCID: PMC2279321
Simultaneous optimization of enzyme activity and quaternary structure by directed evolution
Katherina Vamvaca, Maren Butz, Kai U. Walter, Sean V. Taylor, and Donald Hilvert
Protein Sci. 2005 August; 14(8): 2103–2114. doi: 10.1110/ps.051431605.
PMCID: PMC2279322
Interaction of serine acetyltransferase with O-acetylserine sulfhydrylase active site: Evidence from fluorescence spectroscopy
Barbara Campanini, Francesca Speroni, Enea Salsi, Paul F. Cook, Steven L. Roderick, Bin Huang, Stefano Bettati, and Andrea Mozzarelli
Protein Sci. 2005 August; 14(8): 2115–2124. doi: 10.1110/ps.051492805.
PMCID: PMC2279323
Mutagenic analysis of the nucleation propensity of oxidized Alzheimer’s β-amyloid peptide
Tony Christopeit, Peter Hortschansky, Volker Schroeckh, Karlheinz Gührs, Giorgia Zandomeneghi, and Marcus Fändrich
Protein Sci. 2005 August; 14(8): 2125–2131. doi: 10.1110/ps.051470405.
PMCID: PMC2279324
Integrated modeling of the major events in the MHC class I antigen processing pathway
Pierre Dönnes and Oliver Kohlbacher
Protein Sci. 2005 August; 14(8): 2132–2140. doi: 10.1110/ps.051352405.
PMCID: PMC2279325
A novel system for continuous protein refolding and on-line capture by expanded bed adsorption
Henrik Ferré, Emmanuel Ruffet, Lise-Lotte B. Nielsen, Mogens Holst Nissen, Timothy J. Hobley, Owen R.T. Thomas, and Søren Buus
Protein Sci. 2005 August; 14(8): 2141–2153. doi: 10.1110/ps.051396105.
PMCID: PMC2279326
Influence of the N-terminal domain on the aggregation properties of the prion protein
Kristen N. Frankenfield, Evan T. Powers, and Jeffery W. Kelly
Protein Sci. 2005 August; 14(8): 2154–2166. doi: 10.1110/ps.051434005.
PMCID: PMC2279327
HCA and HML isolated from the red marine algae Hypnea cervicornis and Hypnea musciformis define a novel lectin family
Celso S. Nagano, Henri Debray, Kyria S. Nascimento, Vicente P.T. Pinto, Benildo S. Cavada, Silvana Saker-Sampaio, Wladimir R.L. Farias, Alexandre H. Sampaio, and Juan J. Calvete
Protein Sci. 2005 August; 14(8): 2167–2176. doi: 10.1110/ps.051498505.
PMCID: PMC2279328
Oligomerization of the fifth transmembrane domain from the adenosine A2A receptor
Damien Thévenin, Tzvetana Lazarova, Matthew F. Roberts, and Clifford R. Robinson
Protein Sci. 2005 August; 14(8): 2177–2186. doi: 10.1110/ps.051409205.
PMCID: PMC2279329
Glucosylation of β-lactoglobulin lowers the heat capacity change of unfolding; a unique way to affect protein thermodynamics
Annemarie M.M. Van Teeffelen, Kerensa Broersen, and Harmen H.J. de Jongh
Protein Sci. 2005 August; 14(8): 2187–2194. doi: 10.1110/ps.051405005.
PMCID: PMC2279330
Protein Structure Report
Solution structure of thioredoxin h1 from Arabidopsis thaliana
Francis C. Peterson, Betsy L. Lytle, Sujatha Sampath, Dmitriy Vinarov, Ejan Tyler, Mark Shahan, John L. Markley, and Brian F. Volkman
Protein Sci. 2005 August; 14(8): 2195–2200. doi: 10.1110/ps.051477905.
PMCID: PMC2279331
For the Record
Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain
Charmaine Hoang, Christopher S. Hamilton, Eugene G. Mueller, and Adrian R. Ferré-D’Amaré
Protein Sci. 2005 August; 14(8): 2201–2206. doi: 10.1110/ps.051493605.
PMCID: PMC2279332
Refractive index-based determination of detergent concentration and its application to the study of membrane proteins
Pavel Strop and Axel T. Brunger
Protein Sci. 2005 August; 14(8): 2207–2211. doi: 10.1110/ps.051543805.
PMCID: PMC2279333
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