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Volume 14(5);  May 2005
Articles
Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels
Barbara Campanini, Sara Bologna, Fabio Cannone, Giuseppe Chirico, Andrea Mozzarelli, and Stefano Bettati
Protein Sci. 2005 May; 14(5): 1125–1133. doi: 10.1110/ps.041190805.
PMCID: PMC2253256
Enterococcus faecalis phosphomevalonate kinase
Stephanie S. Doun, John W. Burgner, II, Scott D. Briggs, and Victor W. Rodwell
Protein Sci. 2005 May; 14(5): 1134–1139. doi: 10.1110/ps.041210405.
PMCID: PMC2253259
Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: A nitrogen-15 relaxation study
Junji Iwahara, Robert D. Peterson, and Robert T. Clubb
Protein Sci. 2005 May; 14(5): 1140–1150. doi: 10.1110/ps.041154405.
PMCID: PMC2253272
Identification of mouse brain proteins associated with isoform 3 of metallothionein
David W. Lahti, John D. Hoekman, Abigail M. Tokheim, Bruce L. Martin, and Ian M. Armitage
Protein Sci. 2005 May; 14(5): 1151–1157. doi: 10.1110/ps.041113005.
PMCID: PMC2253260
The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins
Dennis R. Livesay and David La
Protein Sci. 2005 May; 14(5): 1158–1170. doi: 10.1110/ps.041221105.
PMCID: PMC2253277
Disulfide locked variants of factor VIIa with a restricted β-strand conformation have enhanced enzymatic activity
Henry R. Maun, Charles Eigenbrot, Helga Raab, David Arnott, Lilian Phu, Sherron Bullens, and Robert A. Lazarus
Protein Sci. 2005 May; 14(5): 1171–1180. doi: 10.1110/ps.041097505.
PMCID: PMC2253269
Fusogenic Alzheimer’s peptide fragment Aβ (29–42) in interaction with lipid bilayers: Secondary structure, dynamics, and specific interaction with phosphatidyl ethanolamine polar heads as revealed by solid-state NMR
Stéphanie Ravault, Olivier Soubias, Olivier Saurel, Annick Thomas, Robert Brasseur, and Alain Milon
Protein Sci. 2005 May; 14(5): 1181–1189. doi: 10.1110/ps.041291405.
PMCID: PMC2253267
Conversion of 5-aminolevulinate synthase into a more active enzyme by linking the two subunits: Spectroscopic and kinetic properties
Junshun Zhang, Anton V. Cheltsov, and Gloria C. Ferreira
Protein Sci. 2005 May; 14(5): 1190–1200. doi: 10.1110/ps.041258305.
PMCID: PMC2253255
Structural consequences of the familial amyotrophic lateral sclerosis SOD1 mutant His46Arg
Svetlana Antonyuk, Jennifer Stine Elam, Michael A. Hough, Richard W. Strange, Peter A. Doucette, Jorge A. Rodriguez, Lawrence J. Hayward, Joan Selverstone Valentine, P. John Hart, and S. Samar Hasnain
Protein Sci. 2005 May; 14(5): 1201–1213. doi: 10.1110/ps.041256705.
PMCID: PMC2253262
The crystal structure of calcium- and integrin-binding protein 1: Insights into redox regulated functions
Chad J. Blamey, Christopher Ceccarelli, Ulhas P. Naik, and Brian J. Bahnson
Protein Sci. 2005 May; 14(5): 1214–1221. doi: 10.1110/ps.041270805.
PMCID: PMC2253279
Synthetic prions generated in vitro are similar to a newly identified subpopulation of PrPSc from sporadic Creutzfeldt-Jakob Disease
Olga V. Bocharova, Leonid Breydo, Vadim V. Salnikov, Andrew C. Gill, and Ilia V. Baskakov
Protein Sci. 2005 May; 14(5): 1222–1232. doi: 10.1110/ps.041186605.
PMCID: PMC2253268
Three-dimensional structure of (1,4)-β-d-mannan mannanohydrolase from tomato fruit
Richard Bourgault, Aaron J. Oakley, J. Derek Bewley, and Matthew C.J. Wilce
Protein Sci. 2005 May; 14(5): 1233–1241. doi: 10.1110/ps.041260905.
PMCID: PMC2253274
Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent
Ryan Day and Valerie Daggett
Protein Sci. 2005 May; 14(5): 1242–1252. doi: 10.1110/ps.041226005.
PMCID: PMC2253282
Visualization of conformational distribution of short to medium size segments in globular proteins and identification of local structural motifs
Kazuyoshi Ikeda, Kentaro Tomii, Tsuyoshi Yokomizo, Daisuke Mitomo, Keiichiro Maruyama, Shinya Suzuki, and Junichi Higo
Protein Sci. 2005 May; 14(5): 1253–1265. doi: 10.1110/ps.04956305.
PMCID: PMC2253271
Deletion of the proline-rich region of TonB disrupts formation of a 2:1 complex with FhuA, an outer membrane receptor of Escherichia coli
Cezar M. Khursigara, Gregory De Crescenzo, Peter D. Pawelek, and James W. Coulton
Protein Sci. 2005 May; 14(5): 1266–1273. doi: 10.1110/ps.051342505.
PMCID: PMC2253273
The crystal structure of a partial mouse Notch-1 ankyrin domain: Repeats 4 through 7 preserve an ankyrin fold
Olga Y. Lubman, Raphael Kopan, Gabriel Waksman, and Sergey Korolev
Protein Sci. 2005 May; 14(5): 1274–1281. doi: 10.1110/ps.041184105.
PMCID: PMC2253258
Unfolding crystallins: The destabilizing role of a β-hairpin cysteine in βB2-crystallin by simulation and experiment
James T. Macdonald, Andrew G. Purkiss, Myron A. Smith, Paul Evans, Julia M. Goodfellow, and Christine Slingsby
Protein Sci. 2005 May; 14(5): 1282–1292. doi: 10.1110/ps.041227805.
PMCID: PMC2253261
One- and two-body decomposable Poisson-Boltzmann methods for protein design calculations
Shannon A. Marshall, Christina L. Vizcarra, and Stephen L. Mayo
Protein Sci. 2005 May; 14(5): 1293–1304. doi: 10.1110/ps.041259105.
PMCID: PMC2253281
Structural similarity to bridge sequence space: Finding new families on the bridges
Parantu K. Shah, Patrick Aloy, Peer Bork, and Robert B. Russell
Protein Sci. 2005 May; 14(5): 1305–1314. doi: 10.1110/ps.041187405.
PMCID: PMC2253280
All are not equal: A benchmark of different homology modeling programs
Björn Wallner and Arne Elofsson
Protein Sci. 2005 May; 14(5): 1315–1327. doi: 10.1110/ps.041253405.
PMCID: PMC2253266
Improved side-chain modeling for protein–protein docking
Chu Wang, Ora Schueler-Furman, and David Baker
Protein Sci. 2005 May; 14(5): 1328–1339. doi: 10.1110/ps.041222905.
PMCID: PMC2253276
Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine
Yan Zhang, Lei Wang, Peter G. Schultz, and Ian A. Wilson
Protein Sci. 2005 May; 14(5): 1340–1349. doi: 10.1110/ps.041239305.
PMCID: PMC2253270
Protein Structure Report
Crystal structure of yeast YHR049W/FSH1, a member of the serine hydrolase family
Sophie Quevillon-Cheruel, Nicolas Leulliot, Marc Graille, Nadège Hervouet, Frank Coste, Hélène Bénédetti, Charles Zelwer, Joel Janin, and Herman Van Tilbeurgh
Protein Sci. 2005 May; 14(5): 1350–1356. doi: 10.1110/ps.051415905.
PMCID: PMC2253265
For the Record
Characterization of the HslU chaperone affinity for HslV protease
M. Kamran Azim, Walter Goehring, Hyun Kyu Song, Ravishankar Ramachandran, Matthias Bochtler, and Peter Goettig
Protein Sci. 2005 May; 14(5): 1357–1362. doi: 10.1110/ps.04970405.
PMCID: PMC2253264
Action-at-a-distance interactions enhance protein binding affinity
Brian A. Joughin, David F. Green, and Bruce Tidor
Protein Sci. 2005 May; 14(5): 1363–1369. doi: 10.1110/ps.041283105.
PMCID: PMC2253263
The P5 protein from bacteriophage phi-6 is a distant homolog of lytic transglycosylases
Jimin Pei and Nick V. Grishin
Protein Sci. 2005 May; 14(5): 1370–1374. doi: 10.1110/ps.041250005.
PMCID: PMC2253257
Multiple equilibria of the Escherichia coli chaperonin GroES revealed by mass spectrometry
Lynda J. Donald, David J. Stokell, Neil J. Holliday, Werner Ens, Kenneth G. Standing, and Harry W. Duckworth
Protein Sci. 2005 May; 14(5): 1375–1379. doi: 10.1110/ps.041164305.
PMCID: PMC2253275
Correction
CORRECTION
Protein Sci. 2005 May; 14(5): 1380.
PMCID: PMC2253278
Corrects: Nicolas L. Fawzi, et al. Influence of denatured and intermediate states of folding on protein aggregation. Protein Sci. 2005 April; 14(4): 993–1003.
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