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Volume 7(2);  February 1998
Research Articles
Thank you, Hans!
R. A. Bradshaw, D. S. Eisenberg, M. A. Hermodson, J. J. Villafranca, B. W. Matthews, and R. T. Sauer
Protein Sci. 1998 February; 7(2): 231–232.
PMCID: PMC2143937
Domain assignment for protein structures using a consensus approach: characterization and analysis.
S. Jones, M. Stewart, A. Michie, M. B. Swindells, C. Orengo, and J. M. Thornton
Protein Sci. 1998 February; 7(2): 233–242.
PMCID: PMC2143930
Hirunorms are true hirudin mimetics. The crystal structure of human alpha-thrombin-hirunorm V complex.
G. De Simone, A. Lombardi, S. Galdiero, F. Nastri, R. Della Morte, N. Staiano, C. Pedone, M. Bolognesi, and V. Pavone
Protein Sci. 1998 February; 7(2): 243–253.
PMCID: PMC2143932
Alignment algorithm for homology modeling and threading.
N. N. Alexandrov and R. Luethy
Protein Sci. 1998 February; 7(2): 254–258.
PMCID: PMC2143918
Determination and analysis of antigenic epitopes of prostate specific antigen (PSA) and human glandular kallikrein 2 (hK2) using synthetic peptides and computer modeling.
T. Piironen, B. O. Villoutreix, C. Becker, K. Hollingsworth, M. Vihinen, D. Bridon, X. Qiu, J. Rapp, B. Dowell, T. Lövgren, K. Pettersson, and H. Lilja
Protein Sci. 1998 February; 7(2): 259–269.
PMCID: PMC2143911
An interaction-based analysis of calcium-induced conformational changes in Ca2+ sensor proteins.
M. R. Nelson and W. J. Chazin
Protein Sci. 1998 February; 7(2): 270–282.
PMCID: PMC2143906
Structures of adamalysin II with peptidic inhibitors. Implications for the design of tumor necrosis factor alpha convertase inhibitors.
F. X. Gomis-Rüth, E. F. Meyer, L. F. Kress, and V. Politi
Protein Sci. 1998 February; 7(2): 283–292.
PMCID: PMC2143928
Substrate binding and conformational changes of Clostridium glutamicum diaminopimelate dehydrogenase revealed by hydrogen/deuterium exchange and electrospray mass spectrometry.
F. Wang, G. Scapin, J. S. Blanchard, and R. H. Angeletti
Protein Sci. 1998 February; 7(2): 293–299.
PMCID: PMC2143904
Active-site mobility in human immunodeficiency virus, type 1, protease as demonstrated by crystal structure of A28S mutant.
L. Hong, J. A. Hartsuck, S. Foundling, J. Ermolieff, and J. Tang
Protein Sci. 1998 February; 7(2): 300–305.
PMCID: PMC2143907
Apparent local stability of the secondary structure of Azotobacter vinelandii holoflavodoxin II as probed by hydrogen exchange: implications for redox potential regulation and flavodoxin folding.
E. Steensma, M. J. Nijman, Y. J. Bollen, P. A. de Jager, W. A. van den Berg, W. M. van Dongen, and C. P. van Mierlo
Protein Sci. 1998 February; 7(2): 306–317.
PMCID: PMC2143925
Identification of a specific tyrosine residue in Bryodin 1 distinct from the active site but required for full catalytic and cytotoxic activity.
D. K. Fryxell, S. L. Gawlak, R. W. Dodge, and C. B. Siegall
Protein Sci. 1998 February; 7(2): 318–324.
PMCID: PMC2143931
Exploring sequence constraints on an interhelical turn using in vivo selection for catalytic activity.
G. MacBeath, P. Kast, and D. Hilvert
Protein Sci. 1998 February; 7(2): 325–335.
PMCID: PMC2143915
Interhelical contacts are required for the helix bundle fold of apolipophorin III and its ability to interact with lipoproteins.
J. Wang, V. Narayanaswami, B. D. Sykes, and R. O. Ryan
Protein Sci. 1998 February; 7(2): 336–341.
PMCID: PMC2143903
Solid-state NMR studies of the membrane-bound closed state of the colicin E1 channel domain in lipid bilayers.
Y. Kim, K. Valentine, S. J. Opella, S. L. Schendel, and W. A. Cramer
Protein Sci. 1998 February; 7(2): 342–348.
PMCID: PMC2143909
Reactivities of the S2 and S3 subsite residues of thrombin with the native and heparin-induced conformers of antithrombin.
A. R. Rezaie
Protein Sci. 1998 February; 7(2): 349–357.
PMCID: PMC2143920
A folding pathway for betapep-4 peptide 33mer: from unfolded monomers and beta-sheet sandwich dimers to well-structured tetramers.
K. H. Mayo and E. Ilyina
Protein Sci. 1998 February; 7(2): 358–368.
PMCID: PMC2143938
Thioredoxin reductase from Escherichia coli: evidence of restriction to a single conformation upon formation of a crosslink between engineered cysteines.
D. M. Veine, K. Ohnishi, and C. H. Williams, Jr
Protein Sci. 1998 February; 7(2): 369–375.
PMCID: PMC2143934
Three solutions of the protein solubility problem.
W. T. Jenkins
Protein Sci. 1998 February; 7(2): 376–382.
PMCID: PMC2143908
Trifluoroethanol effects on helix propensity and electrostatic interactions in the helical peptide from ribonuclease T1.
J. K. Myers, C. N. Pace, and J. M. Scholtz
Protein Sci. 1998 February; 7(2): 383–388.
PMCID: PMC2143935
15N backbone dynamics of the S-peptide from ribonuclease A in its free and S-protein bound forms: toward a site-specific analysis of entropy changes upon folding.
A. T. Alexandrescu, K. Rathgeb-Szabo, K. Rumpel, W. Jahnke, T. Schulthess, and R. A. Kammerer
Protein Sci. 1998 February; 7(2): 389–402.
PMCID: PMC2143926
Crystal structures of CheY from Thermotoga maritima do not support conventional explanations for the structural basis of enhanced thermostability.
K. C. Usher, A. F. de la Cruz, F. W. Dahlquist, R. V. Swanson, M. I. Simon, and S. J. Remington
Protein Sci. 1998 February; 7(2): 403–412.
PMCID: PMC2143910
Engineering protein for X-ray crystallography: the murine Major Histocompatibility Complex class II molecule I-Ad.
C. A. Scott, K. C. Garcia, E. A. Stura, P. A. Peterson, I. A. Wilson, and L. Teyton
Protein Sci. 1998 February; 7(2): 413–418.
PMCID: PMC2143914
Expansion of the genetic code: site-directed p-fluoro-phenylalanine incorporation in Escherichia coli.
R. Furter
Protein Sci. 1998 February; 7(2): 419–426.
PMCID: PMC2143905
Formation and movement of Fe(III) in horse spleen, H- and L-recombinant ferritins. A fluorescence study.
S. Cavallo, G. Mei, S. Stefanini, N. Rosato, A. Finazzi-Agrò, and E. Chiancone
Protein Sci. 1998 February; 7(2): 427–432.
PMCID: PMC2143922
Chemical synthesis and structural characterization of the RGD-protein decorsin: a potent inhibitor of platelet aggregation.
P. Polverino de Laureto, E. Scaramella, V. De Filippis, O. Marin, M. G. Doni, and A. Fontana
Protein Sci. 1998 February; 7(2): 433–444.
PMCID: PMC2143916
Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins.
M. Gerstein and M. Levitt
Protein Sci. 1998 February; 7(2): 445–456.
PMCID: PMC2143933
A conserved deamidation site at Asn 2 in the catalytic subunit of mammalian cAMP-dependent protein kinase detected by capillary LC-MS and tandem mass spectrometry.
P. T. Jedrzejewski, A. Girod, A. Tholey, N. König, S. Thullner, V. Kinzel, and D. Bossemeyer
Protein Sci. 1998 February; 7(2): 457–469.
PMCID: PMC2143929
Stability and folding properties of a model beta-sheet protein, Escherichia coli CspA.
K. L. Reid, H. M. Rodriguez, B. J. Hillier, and L. M. Gregoret
Protein Sci. 1998 February; 7(2): 470–479.
PMCID: PMC2143919
The early folding kinetics of apomyoglobin.
R. V. Pappu and D. L. Weaver
Protein Sci. 1998 February; 7(2): 480–490.
PMCID: PMC2143917
GENFOLD: a genetic algorithm for folding protein structures using NMR restraints.
M. J. Bayley, G. Jones, P. Willett, and M. P. Williamson
Protein Sci. 1998 February; 7(2): 491–499.
PMCID: PMC2143927
High level, context dependent misincorporation of lysine for arginine in Saccharomyces cerevisiae a1 homeodomain expressed in Escherichia coli.
M. D. Forman, R. F. Stack, P. S. Masters, C. R. Hauer, and S. M. Baxter
Protein Sci. 1998 February; 7(2): 500–503.
PMCID: PMC2143913
The importance of dynamic light scattering in obtaining multiple crystal forms of Trypanosoma brucei PGK.
B. E. Bernstein, P. A. Michels, H. Kim, P. H. Petra, and W. G. Hol
Protein Sci. 1998 February; 7(2): 504–507.
PMCID: PMC2143923
Purification and crystallization of the CDK-associated protein phosphatase KAP expressed in Escherichia coli.
N. Hanlon and D. Barford
Protein Sci. 1998 February; 7(2): 508–511.
PMCID: PMC2143921
A LexA mutant repressor with a relaxed inter-domain linker.
P. Oertel-Buchheit, J. Reinbolt, M. John, M. Granger-Schnarr, and M. Schnarr
Protein Sci. 1998 February; 7(2): 512–515.
PMCID: PMC2143912
A revisit to bacterial protein synthesis: the search for the role of GTP.
H. Weissbach
Protein Sci. 1998 February; 7(2): 516–521.
PMCID: PMC2143924
Erratum
Protein Sci. 1998 February; 7(2): 525.
PMCID: PMC2143936
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