pmc logo imageJournal ListSearchpmc logo image
Logo of narJournal URL: redirect3.cgi?&&auth=0rMwaB0P7_UpsDKnkARfN-gPwNTC_Fsw784kDqkAc&reftype=publisher&issue-id=3014&journal-id=4&FROM=TOC|Banner&TO=Publisher|Other|N%2FA&rendering-type=normal&&http://nar.oupjournals.org
Other Issues:  previous | next | latest | archive
Volume 28(18);  September 15, 2000
Survey and Summary
Exon–intron organization of genes in the slime mold Physarum polycephalum
Joanna Trzcinska-Danielewicz and Jan Fronk
Nucleic Acids Res. 2000 September 15; 28(18): 3411–3416.
PMCID: PMC110748
Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
L. Aravind, Kira S. Makarova, and Eugene V. Koonin
Nucleic Acids Res. 2000 September 15; 28(18): 3417–3432.
PMCID: PMC110722
Articles
Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter
Magali Roux-Rouquie and Monique Marilley
Nucleic Acids Res. 2000 September 15; 28(18): 3433–3441.
PMCID: PMC110736
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
B. Snel, G. Lehmann, P. Bork, and M. A. Huynen
Nucleic Acids Res. 2000 September 15; 28(18): 3442–3444.
PMCID: PMC110752
The human tRNA(m22G26)dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene
Jianming Liu and Kerstin B. Stråby
Nucleic Acids Res. 2000 September 15; 28(18): 3445–3451.
PMCID: PMC110725
The 28S–18S rDNA intergenic spacer from Crithidia fasciculata: repeated sequences, length heterogeneity, putative processing sites and potential interactions between U3 small nucleolar RNA and the ribosomal RNA precursor
Murray N. Schnare, James C. Collings, David F. Spencer, and Michael W. Gray
Nucleic Acids Res. 2000 September 15; 28(18): 3452–3461.
PMCID: PMC110749
Interaction of the U3-55k protein with U3 snoRNA is mediated by the Box B/C motif of U3 and the WD repeats of U3-55k
Andrew A. Lukowiak, Sander Granneman, Sharon A. Mattox, Wayne A. Speckmann, Kevin Jones, Helma Pluk, Walther J. van Venrooij, Rebecca M. Terns, and Michael P. Terns
Nucleic Acids Res. 2000 September 15; 28(18): 3462–3471.
PMCID: PMC110750
Structure and dynamics of three-way DNA junctions: atomic force microscopy studies
Luda S. Shlyakhtenko, Vladimir N. Potaman, Richard R. Sinden, Alexander A. Gall, and Yuri L. Lyubchenko
Nucleic Acids Res. 2000 September 15; 28(18): 3472–3477.
PMCID: PMC110733
RBT1, a novel transcriptional co-activator, binds the second subunit of Replication Protein A
John M. Cho, Daniel J. Song, Josee Bergeron, Naciba Benlimame, Marc S. Wold, and Moulay A. Alaoui-Jamali
Nucleic Acids Res. 2000 September 15; 28(18): 3478–3485.
PMCID: PMC110737
Web-based visualization tools for bacterial genome alignments
Liliana Florea, Cathy Riemer, Scott Schwartz, Zheng Zhang, Nikola Stojanovic, Webb Miller, and Michael McClelland
Nucleic Acids Res. 2000 September 15; 28(18): 3486–3496.
PMCID: PMC110741
Competition among seven Escherichia coli σ subunits: relative binding affinities to the core RNA polymerase
Hiroto Maeda, Nobuyuki Fujita, and Akira Ishihama
Nucleic Acids Res. 2000 September 15; 28(18): 3497–3503.
PMCID: PMC110723
H-NS mediated compaction of DNA visualised by atomic force microscopy
Remus Thei Dame, Claire Wyman, and Nora Goosen
Nucleic Acids Res. 2000 September 15; 28(18): 3504–3510.
PMCID: PMC110753
Parallel intramolecular DNA triple helix with G and T bases in the third strand stabilized by Zn2+ ions
E. B. Khomyakova, H. Gousset, J. Liquier, T. Huynh-Dinh, C. Gouyette, M. Takahashi, V. L. Florentiev, and E. Taillandier
Nucleic Acids Res. 2000 September 15; 28(18): 3511–3516.
PMCID: PMC110744
Gradients in nucleotide and codon usage along Escherichia coli genes
Sean D. Hooper and Otto G. Berg
Nucleic Acids Res. 2000 September 15; 28(18): 3517–3523.
PMCID: PMC110745
Complete deletion of yeast chromosomal rDNA repeats and integration of a new rDNA repeat: use of rDNA deletion strains for functional analysis of rDNA promoter elements in vivo
Hobert H. Wai, Loan Vu, Melanie Oakes, and Masayasu Nomura
Nucleic Acids Res. 2000 September 15; 28(18): 3524–3534.
PMCID: PMC110729
Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces
Todd Strother, Robert J. Hamers, and Lloyd M. Smith
Nucleic Acids Res. 2000 September 15; 28(18): 3535–3541.
PMCID: PMC110746
Transcriptional activation by the PHD finger is inhibited through an adjacent leucine zipper that binds 14-3-3 proteins
Thorsten Halbach, Nico Scheer, and Wolfgang Werr
Nucleic Acids Res. 2000 September 15; 28(18): 3542–3550.
PMCID: PMC110726
Prod is a novel DNA-binding protein that binds to the 1.686 g/cm3 10 bp satellite repeat of Drosophila melanogaster
Tibor Török, Mátyás Gorjánácz, Peter J. Bryant, and István Kiss
Nucleic Acids Res. 2000 September 15; 28(18): 3551–3557.
PMCID: PMC110743
The DNA ligase III zinc finger stimulates binding to DNA secondary structure and promotes end joining
Richard M. Taylor, Claire J. Whitehouse, and Keith W. Caldecott
Nucleic Acids Res. 2000 September 15; 28(18): 3558–3563.
PMCID: PMC110727
Requirement for Phe36 for DNA binding and mismatch repair by Escherichia coli MutS protein
Akira Yamamoto, Mark J. Schofield, Indranil Biswas, and Peggy Hsieh
Nucleic Acids Res. 2000 September 15; 28(18): 3564–3569.
PMCID: PMC110738
PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of β-propellers in UV-damaged DNA-binding protein
Andrew F. Neuwald and Aleksandar Poleksic
Nucleic Acids Res. 2000 September 15; 28(18): 3570–3580.
PMCID: PMC110734
MDM2 interacts with the C-terminus of the catalytic subunit of DNA polymerase [var epsilon]
Nikolina Vlatkovic, Stephanie Guerrera, Ying Li, Stuart Linn, Dale S. Haines, and Mark T. Boyd
Nucleic Acids Res. 2000 September 15; 28(18): 3581–3586.
PMCID: PMC110721
Role of FXR and FTF in bile acid-mediated suppression of cholesterol 7α-hydroxylase transcription
Antonio del Castillo-Olivares and Gregorio Gil
Nucleic Acids Res. 2000 September 15; 28(18): 3587–3593.
PMCID: PMC110735
Examination of the DNA substrate selectivity of DNA cytosine methyltransferases using mass tagging
Valaiporn Rusmintratip, Arthur D. Riggs, and Lawrence C. Sowers
Nucleic Acids Res. 2000 September 15; 28(18): 3594–3599.
PMCID: PMC110732
A functional assay in Escherichia coli to detect non-assisted interaction between galactose repressor dimers
N. Perez, M. Rehault, and M. Amouyal
Nucleic Acids Res. 2000 September 15; 28(18): 3600–3604.
PMCID: PMC110724
Stable expression and cell-specific chromatin structure of human α1-antitrypsin cosmid transgenes in rat hepatoma cells
Pierre Rollini, Lianjun Xu, and R. E. K. Fournier
Nucleic Acids Res. 2000 September 15; 28(18): 3605–3614.
PMCID: PMC110740
Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops
Barry Moore, Chad C. Nelson, Britt C. Persson, Raymond F. Gesteland, and John F. Atkins
Nucleic Acids Res. 2000 September 15; 28(18): 3615–3624.
PMCID: PMC110719
2′-Deoxy-2′-fluoro-β-d-arabinonucleosides and oligonucleotides (2′F-ANA): synthesis and physicochemical studies
Christopher J. Wilds and Masad J. Damha
Nucleic Acids Res. 2000 September 15; 28(18): 3625–3635.
PMCID: PMC110742
Anchoring of rice BAC clones to the rice genetic map in silico
Qiaoping Yuan, Feng Liang, Joseph Hsiao, Victoria Zismann, Maria-Ines Benito, John Quackenbush, Rod Wing, and Robin Buell
Nucleic Acids Res. 2000 September 15; 28(18): 3636–3641.
PMCID: PMC110739
Telomere repeat DNA forms a large non-covalent complex with unique cohesive properties which is dissociated by Werner syndrome DNA helicase in the presence of replication protein A
Itaru Ohsugi, Yoshiki Tokutake, Noriyuki Suzuki, Toshinori Ide, Masanobu Sugimoto, and Yasuhiro Furuichi
Nucleic Acids Res. 2000 September 15; 28(18): 3642–3648.
PMCID: PMC110730
Mutational spectrum analysis of RNase H(35) deficient Saccharomyces cerevisiae using fluorescence-based directed termination PCR
Junjian Z. Chen, Junzhuan Qiu, Binghui Shen, and Gerald P. Holmquist
Nucleic Acids Res. 2000 September 15; 28(18): 3649–3656.
PMCID: PMC110751
An optimized protocol for analysis of EST sequences
Feng Liang, Ingeborg Holt, Geo Pertea, Svetlana Karamycheva, Steven L. Salzberg, and John Quackenbush
Nucleic Acids Res. 2000 September 15; 28(18): 3657–3665.
PMCID: PMC110731
Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants
Jong-Wook Kim, Hyung-Cheol Kim, Gyoung-Mi Kim, Jun-Mo Yang, Jef D. Boeke, and Kiebang Nam
Nucleic Acids Res. 2000 September 15; 28(18): 3666–3673.
PMCID: PMC110720
Eukaryotic ribonucleases HI and HII generate characteristic hydrolytic patterns on DNA–RNA hybrids: further evidence that mitochondrial RNase H is an RNase HII
Frédéric Pileur, Jean-Jacques Toulme, and Christian Cazenave
Nucleic Acids Res. 2000 September 15; 28(18): 3674–3683.
PMCID: PMC110728
Two novel human and mouse DNA polymerases of the polX family
Said Aoufouchi, Eric Flatter, Auriel Dahan, Ahmad Faili, Barbara Bertocci, Sebastien Storck, Frédéric Delbos, Laurentiu Cocea, Neetu Gupta, Jean-Claude Weill, and Claude-Agnès Reynaud
Nucleic Acids Res. 2000 September 15; 28(18): 3684–3693.
PMCID: PMC110747
NAR Methods Online
Analysis of short tandem repeat polymorphisms by electrospray ion trap mass spectrometry
S. Hahner, A. Schneider, A. Ingendoh, and J. Mosner
Nucleic Acids Res. 2000 September 15; 28(18): e82.
PMCID: PMC110754
Psoralen photo-crosslinked mRNA–puromycin conjugates: a novel template for the rapid and facile preparation of mRNA–protein fusions
Markus Kurz, Ke Gu, and Peter A. Lohse
Nucleic Acids Res. 2000 September 15; 28(18): e83.
PMCID: PMC110755
Engineering EGFP reporter constructs into a 200 kb human β-globin BAC clone using GET Recombination
Michael Orford, Mikhail Nefedov, Jim Vadolas, Faten Zaibak, Robert Williamson, and Panayiotis A. Ioannou
Nucleic Acids Res. 2000 September 15; 28(18): e84.
PMCID: PMC110756
Other Issues:  previous | next | latest | archive