| | Survey and Summary Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit Ivaylo P. Ivanov, Raymond F. Gesteland, and John F. Atkins PMCID: PMC110703 Purα: a multifunctional single-stranded DNA- and RNA-binding protein Gary L. Gallia, Edward M. Johnson, and Kamel Khalili PMCID: PMC110688 Articles Purification and characterization of a mammalian homolog of Escherichia coli MutY mismatch repair protein from calf liver mitochondria Antony Parker, Yesong Gu, and A-Lien Lu PMCID: PMC110712 Functional analysis of putative restriction–modification system genes in the Helicobacter pylori J99 genome Huimin Kong, Lee-Fong Lin, Nicole Porter, Shawn Stickel, Devon Byrd, Janos Posfai, and Richard J. Roberts PMCID: PMC110709 The N8-(2′-deoxyribofuranoside) of 8-aza-7-deazaadenine: a universal nucleoside forming specific hydrogen bonds with the four canonical DNA constituents Frank Seela and Harald Debelak PMCID: PMC110707 Transcriptional repression of BRCA1 by aberrant cytosine methylation, histone hypoacetylation and chromatin condensation of the BRCA1 promoter Judd C. Rice and Bernard W. Futscher PMCID: PMC110706 Functional significance of conserved residues in the phosphohydrolase module of Escherichia coli MutT protein Hidetoshi Shimokawa, Yoshimitsu Fujii, Masato Furuichi, Mutsuo Sekiguchi, and Yusaku Nakabeppu PMCID: PMC110708 Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells N. Steward, T. Kusano, and H. Sano PMCID: PMC110715 Werner syndrome exonuclease catalyzes structure-dependent degradation of DNA Jiang-Cheng Shen and Lawrence A. Loeb PMCID: PMC110713 Structure–function relationships of two closely related group IC3 intron ribozymes from Azoarcus and Synechococcus pre-tRNA Yoshiya Ikawa, Daisuke Naito, Hideaki Shiraishi, and Tan Inoue PMCID: PMC110692 Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames Thomas Dandekar, Martijn Huynen, Jörg Thomas Regula, Barbara Ueberle, Carl Ulrich Zimmermann, Miguel A. Andrade, Tobias Doerks, Luis Sánchez-Pulido, Berend Snel, Mikita Suyama, Yan P. Yuan, Richard Herrmann, and Peer Bork PMCID: PMC110705 Loss of drug-stimulated topoisomerase II DNA breaks in living cells is different at two unrelated loci Monica Binaschi, M. Evelina Borgnetto, and Giovanni Capranico PMCID: PMC110701 In vivo repair of methylation damage in Aag 3-methyladenine DNA glycosylase null mouse cells Stephen A. Smith and Bevin P. Engelward PMCID: PMC110696 Complex patterns of inheritance of an imprinted murine transgene suggest incomplete germline erasure Margot Kearns, Jost Preis, Margaret McDonald, Christine Morris, and Emma Whitelaw PMCID: PMC110704 RNA-binding characteristics of the chloroplast S1-like ribosomal protein CS1 Alina Shteiman-Kotler and Gadi Schuster PMCID: PMC110697 Expanding the structural and functional diversity of RNA: analog uridine triphosphates as candidates for in vitro selection of nucleic acids Narendra K. Vaish, Andrew W. Fraley, Jack W. Szostak, and Larry W. McLaughlin PMCID: PMC110695 Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3′-para-nitrophenyl phosphate ester George Woodfield, Chonghui Cheng, Stewart Shuman, and Alex B. Burgin PMCID: PMC110714 Strand invasion by mixed base PNAs and a PNA–peptide chimera Xiao Zhang, Tsutomu Ishihara, and David R. Corey PMCID: PMC110698 Intercodon dinucleotides affect codon choice in plant genes Francesca De Amicis and Stefano Marchetti PMCID: PMC110687 Levels of free PABP are limited by newly polyadenylated mRNA in early Spisula embryogenesis Osvaldo P. de Melo Neto, James A. Walker, Cezar Martins de Sa, and Nancy Standart PMCID: PMC110693 The majority of human replication protein A remains complexed throughout the cell cycle Yueh-Ming Loo and Thomas Melendy PMCID: PMC110711 Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains Jeff Smith, Marina Bibikova, Frank G. Whitby, A. R. Reddy, Srinivasan Chandrasegaran, and Dana Carroll PMCID: PMC110700 Differential effect of zinc finger deletions on the binding of CTCF to the promoter of the amyloid precursor protein gene Wolfgang W. Quitschke, Michael J. Taheny, Laura J. Fochtmann, and Alexander A. Vostrov PMCID: PMC110710 Structural basis of polyamine–DNA recognition: spermidine and spermine interactions with genomic B-DNAs of different GC content probed by Raman spectroscopy Hong Deng, Victor A. Bloomfield, James M. Benevides, and George J. Thomas, Jr PMCID: PMC110699 NMR characterization of a kissing complex formed between the TAR RNA element of HIV-1 and a DNA aptamer D. Collin, C. van Heijenoort, C. Boiziau, J.-J. Toulmé, and E. Guittet PMCID: PMC110702 The stress-activated MAP kinase Sty1/Spc1 and a 3′-regulatory element mediate UV-induced expression of the uvi15+ gene at the post-transcriptional level Minkyu Kim, Woojin Lee, Jiyoung Park, Jae Bum Kim, Yeun Kyu Jang, Rho Hyun Seong, Soo Young Choe, and Sang Dai Park PMCID: PMC110690 REST-VP16 activates multiple neuronal differentiation genes in human NT2 cells Anand Immaneni, Patrick Lawinger, Zhaoyang Zhao, Wenying Lu, Luca Rastelli, Julia H. Morris, and Sadhan Majumder PMCID: PMC110685 NAR Methods Online Insertion of disease-causing mutations in BACs by homologous recombination in Escherichia coli Mikhail Nefedov, Robert Williamson, and Panayiotis A. Ioannou PMCID: PMC110716 An extrachromosomal tetracycline-regulatable system for mammalian cells Christopher R. Sclimenti, Edward J. Baba, and Michele P. Calos PMCID: PMC110717 Recovery and potential utility of YACs as circular YACs/BACs Massimo Cocchia, Natalay Kouprina, Sung-Jae Kim, Vladimir Larionov, David Schlessinger, and Ramaiah Nagaraja PMCID: PMC110718 |
