| | Molecular Biology Histone acetylation-independent transcription stimulation by a histone chaperone Kohsuke Kato, Mary Miyaji-Yamaguchi, Mitsuru Okuwaki, and Kyosuke Nagata PMCID: PMC1807960 Relationships between the physicochemical properties of an amphiphilic triblock copolymers/DNA complexes and their intramuscular transfection efficiency Mahajoub Bello-Roufaï, Olivier Lambert, and Bruno Pitard PMCID: PMC1807968 DNA methylation immediately adjacent to active histone marking does not silence transcription Arie B. Brinkman, Sebastiaan W. C. Pennings, Georgia G. Braliou, Luc E. G. Rietveld, and Hendrik G. Stunnenberg PMCID: PMC1807972 Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain Geetu Mendiratta, Peter R. Eriksson, and David J. Clark PMCID: PMC1807970 Control of the yeast telomeric senescence survival pathways of recombination by the Mec1 and Mec3 DNA damage sensors and RPA Nathalie Grandin and Michel Charbonneau PMCID: PMC1807969 Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain Kenji Fukui, Hiromichi Kosaka, Seiki Kuramitsu, and Ryoji Masui PMCID: PMC1807967 Tfb5 interacts with Tfb2 and facilitates nucleotide excision repair in yeast Ying Zhou, Haiping Kou, and Zhigang Wang PMCID: PMC1807977 Deletion of a trypanosome telomere leads to loss of silencing and progressive loss of terminal DNA in the absence of cell cycle arrest Lucy Glover, Sam Alsford, Caroline Beattie, and David Horn PMCID: PMC1807955 The MH1 domain of Smad3 interacts with Pax6 and represses autoregulation of the Pax6 P1 promoter Timothy Grocott, Victoria Frost, Marjorie Maillard, Terje Johansen, Grant N. Wheeler, Lucy J. Dawes, I. Michael Wormstone, and Andrew Chantry PMCID: PMC1807973 The Delta intracellular domain mediates TGF-β/Activin signaling through binding to Smads and has an important bi-directional function in the Notch–Delta signaling pathway Masahiro Hiratochi, Hisashi Nagase, Yu Kuramochi, Chang-Sung Koh, Takeshi Ohkawara, and Kohzo Nakayama PMCID: PMC1807952 SET3p monomethylates histone H3 on lysine 9 and is required for the silencing of tandemly repeated transgenes in Chlamydomonas J. Armando Casas-Mollano, Karin van Dijk, John Eisenhart, and Heriberto Cerutti PMCID: PMC1807958 Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines Tumpa Sarkar, Iulia Vitoc, Ishita Mukerji, and Nicholas V. Hud PMCID: PMC1807954 Gene-specific recruitment of positive and negative elongation factors during stimulated transcription of the MKP-1 gene in neuroendocrine cells Toshitsugu Fujita, Stephan Ryser, Silvia Tortola, Isabelle Piuz, and Werner Schlegel PMCID: PMC1807974 RNA The BRCT domain of mammalian Pes1 is crucial for nucleolar localization and rRNA processing Michael Hölzel, Thomas Grimm, Michaela Rohrmoser, Anastassia Malamoussi, Thomas Harasim, Anita Gruber-Eber, Elisabeth Kremmer, and Dirk Eick PMCID: PMC1807956 The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA Michael P. Spiller, Kum-Loong Boon, Martin A. M. Reijns, and Jean D. Beggs PMCID: PMC1807951 Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets Pierre Mandin, Francis Repoila, Massimo Vergassola, Thomas Geissmann, and Pascale Cossart PMCID: PMC1807966 Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA Véronique Arluison, Sungchul Hohng, Rahul Roy, Olivier Pellegrini, Philippe Régnier, and Taekjip Ha PMCID: PMC1807976 Translational control and target recognition by Escherichia coli small RNAs in vivo Johannes H. Urban and Jörg Vogel PMCID: PMC1807950 Structural Biology Small-angle X-ray characterization of the nucleoprotein complexes resulting from DNA-induced oligomerization of HIV-1 integrase Svetlana Baranova, Fedor V. Tuzikov, Olga D. Zakharova, Natalia A. Tuzikova, Christina Calmels, Simon Litvak, Laura Tarrago-Litvak, Vincent Parissi, and Georgy A. Nevinsky PMCID: PMC1807944 Methods Online Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding Pierre Taberlet, Eric Coissac, François Pompanon, Ludovic Gielly, Christian Miquel, Alice Valentini, Thierry Vermat, Gérard Corthier, Christian Brochmann, and Eske Willerslev PMCID: PMC1807943 High resolution array-CGH analysis of single cells Heike Fiegler, Jochen B. Geigl, Sabine Langer, Diane Rigler, Keith Porter, Kristian Unger, Nigel P. Carter, and Michael R. Speicher PMCID: PMC1807964 Rapid DNA mapping by fluorescent single molecule detection Ming Xiao, Angie Phong, Connie Ha, Ting-Fung Chan, Dongmei Cai, Lucinda Leung, Eunice Wan, Amy L. Kistler, Joseph L. DeRisi, Paul R. Selvin, and Pui-Yan Kwok PMCID: PMC1807959 Rapid conditional knock-down–knock-in system for mammalian cells Michael Hölzel, Michaela Rohrmoser, Mathias Orban, Cornelia Hömig, Thomas Harasim, Anastassia Malamoussi, Anita Gruber-Eber, Vigo Heissmeyer, Georg Bornkamm, and Dirk Eick PMCID: PMC1807947 Free energy of DNA duplex formation on short oligonucleotide microarrays Li Zhang, Chunlei Wu, Roberto Carta, and Haitao Zhao PMCID: PMC1807971 Accurate, high-throughput typing of copy number variation using paralogue ratios from dispersed repeats John A. L. Armour, Raquel Palla, Patrick L. J. M. Zeeuwen, Martin den Heijer, Joost Schalkwijk, and Edward J. Hollox PMCID: PMC1807953 Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes Timothy E. Reddy, Boris E. Shakhnovich, Daniel S. Roberts, Shelley J. Russek, and Charles DeLisi PMCID: PMC1807961 Computational Biology Anatomy of Escherichia coli σ70 promoters Ryan K. Shultzaberger, Zehua Chen, Karen A. Lewis, and Thomas D. Schneider PMCID: PMC1807945 Nucleic Acid Enzymes Spermidine biases the resolution of Holliday junctions by phage λ integrase Jeffrey L. Boldt, Kevin V. Kepple, Geoffrey D. Cassell, and Anca M. Segall PMCID: PMC1807965 Specific targeting of cytosine methylation to DNA sequences in vivo Alexander E. Smith and Kevin G. Ford PMCID: PMC1807978 The 32 kDa subunit of replication protein A (RPA) participates in the DNA replication of Mung bean yellow mosaic India virus (MYMIV) by interacting with the viral Rep protein Dharmendra Kumar Singh, Mohammad Nurul Islam, Nirupam Roy Choudhury, Sumona Karjee, and Sunil Kumar Mukherjee PMCID: PMC1807949 Deinococcus radiodurans RNA ligase exemplifies a novel ligase clade with a distinctive N-terminal module that is important for 5′-PO4 nick sealing and ligase adenylylation but dispensable for phosphodiester formation at an adenylylated nick Amy Raymond and Stewart Shuman PMCID: PMC1807946 Contributions of ubiquitin- and PCNA-binding domains to the activity of Polymerase η in Saccharomyces cerevisiae Joanne L. Parker, Aleksandra B. Bielen, Ivan Dikic, and Helle D. Ulrich PMCID: PMC1807963 The accessory subunit B of DNA polymerase γ is required for mitochondrial replisome function Géraldine Farge, Xuan Hoi Pham, Teresa Holmlund, Ivan Khorostov, and Maria Falkenberg PMCID: PMC1807957 GEK1, a gene product of Arabidopsis thaliana involved in ethanol tolerance, is a d-aminoacyl-tRNA deacylase Sandra Wydau, Maria-Laura Ferri-Fioni, Sylvain Blanquet, and Pierre Plateau PMCID: PMC1807948 Archaeal MCM has separable processivity, substrate choice and helicase domains Elizabeth R. Barry, Adam T. McGeoch, Zvi Kelman, and Stephen D. Bell PMCID: PMC1807962 Corrigendum Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme Raphaël Kiekens, Annelies Vercauteren, Beatrijs Moerkerke, Els Goetghebeur, Hilde Van Den Daele, Roel Sterken, Martin Kuiper, Fred van Eeuwijk, and Marnik Vuylsteke PMCID: PMC1807975 Corrects: Raphaël Kiekens, et al. Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme. Nucleic Acids Res. 2006; 34(13): 3677–3686. |
