| | Book Review Review of "Systems Biology in Practice" by Edda Klipp, Ralf Hertwig, Axel Kowald, Christoph Wierling and Hans Lehrach Paul S Agutter PMCID: PMC1215524 Commentaries The complexity of anatomical systems Fabio Grizzi and Maurizio Chiriva-Internati PMCID: PMC1180857 Uncertainty principle of genetic information in a living cell Pierluigi Strippoli, Silvia Canaider, Francesco Noferini, Pietro D'Addabbo, Lorenza Vitale, Federica Facchin, Luca Lenzi, Raffaella Casadei, Paolo Carinci, Maria Zannotti, and Flavia Frabetti PMCID: PMC1262781 Comment on and reply to "Analysis of variation of amplitudes in cell cycle gene expression" by Liu, Gaido and Wolfinger: On the analysis of gene expression during the normal, eukaryotic, cell cycle Stephen Cooper PMCID: PMC1298338 Editorial A new journal – "Theoretical Biology and Medical Modelling" Denys N Wheatley PMCID: PMC1156957 Research Human embryonal epithelial cells of the developing small intestinal crypts can express the Hodgkin-cell associated antigen Ki-1 (CD30) in spontaneous abortions during the first trimester of gestation Demetrio Tamiolakis, John Venizelos, Maria Lambropoulou, Silva Nikolaidou, Sophia Bolioti, Maria Tsiapali, Dionysios Verettas, Panagiotis Tsikouras, Athanasios Chatzimichail, and Nikolas Papadopoulos PMCID: PMC546234 Construction of predictive promoter models on the example of antibacterial response of human epithelial cells Ekaterina Shelest and Edgar Wingender PMCID: PMC546226 In vitro bioassay as a predictor of in vivo response Ross Barnard and Konstantin G Gurevich PMCID: PMC549212 Single cell studies of the cell cycle and some models JM Mitchison PMCID: PMC550673 Propagated repolarization of simulated action potentials in cardiac muscle and smooth muscle Nicholas Sperelakis, Lakshminarayanan Ramasamy, and Bijoy Kalloor PMCID: PMC550671 Volume-based non-continuum modeling of bone functional adaptation Zhengyuan Wang and Adrian Mondry PMCID: PMC553991 High-Temperature unfolding of a trp-Cage mini-protein: a molecular dynamics simulation study Aswin Sai Narain Seshasayee PMCID: PMC555740 The quantitation of buffering action I. A formal & general approach Bernhard M Schmitt PMCID: PMC1079953 The quantitation of buffering action II. Applications of the formal & general approach Bernhard M Schmitt PMCID: PMC1079954 The Estradiol-Dihydrotestosterone model of prostate cancer A Edward Friedman PMCID: PMC1079949 A topological model of biofeedback based on catecholamine interactions Tapas K Basak, Suman Halder, Madona Kumar, Renu Sharma, and Bijoylaxmi Midya PMCID: PMC1079950 Tyrosine phosphorylation of myosin heavy chain during skeletal muscle differentiation: an integrated bioinformatics approach DF Harney, RK Butler, and RJ Edwards PMCID: PMC1079951 Mathematical model of blunt injury to the vascular wall via formation of rouleaux and changes in local hemodynamic and rheological factors. Implications for the mechanism of traumatic myocardial infarction Rovshan M Ismailov PMCID: PMC1079952 Hyperbolastic growth models: theory and application Mohammad Tabatabai, David Keith Williams, and Zoran Bursac PMCID: PMC1084364 Location of DNA damage by charge exchanging repair enzymes: effects of cooperativity on location time Kasper Astrup Eriksen PMCID: PMC1142343 Breakdown of accommodation in nerve: a possible role for persistent sodium current Kristian Hennings, Lars Arendt-Nielsen, and Ole K Andersen PMCID: PMC1090618 An ETP model (exclusion-tolerance-progression) for multi drug resistance Subburaj Kannan PMCID: PMC1131929 Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition Yoichi Nakayama, Ayako Kinoshita, and Masaru Tomita PMCID: PMC1142344 Quantification of the glycogen cascade system: the ultrasensitive responses of liver glycogen synthase and muscle phosphorylase are due to distinctive regulatory designs Vivek K Mutalik and KV Venkatesh PMCID: PMC1180476 Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome Karthikeyan Sivaraman, Aswin Sai Narain Seshasayee, Krishnakumar Swaminathan, Geetha Muthukumaran, and Gautam Pennathur PMCID: PMC1166578 The ups and downs of biological timers Noa Rappaport, Shay Winter, and Naama Barkai PMCID: PMC1208956 Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach Anne-Laure Boulesteix and Korbinian Strimmer PMCID: PMC1182396 Identification and isolation of embryonic stem cells in reproductive endocrinology: theoretical protocols for conservation of human embryos derived from in vitro fertilization Eric Scott Sills, Takumi Takeuchi, Noriko Tanaka, Queenie V Neri, and Gianpiero D Palermo PMCID: PMC1185568 Statistical distribution of blood serotonin as a predictor of early autistic brain abnormalities Skirmantas Janušonis PMCID: PMC1199627 Modelling of oedemous limbs and venous ulcers using partial differential equations Hassan Ugail and Michael J Wilson PMCID: PMC1198260 The fractal geometry of nutrient exchange surfaces does not provide an explanation for 3/4-power metabolic scaling Page R Painter PMCID: PMC1226149 Allometric scaling of the maximum metabolic rate of mammals: oxygen transport from the lungs to the heart is a limiting step Page R Painter PMCID: PMC1236962 On the number of founding germ cells in humans Chang-Jiang Zheng, E Georg Luebeck, Breck Byers, and Suresh H Moolgavkar PMCID: PMC1215522 Possible Cis-acting signal that could be involved in the localization of different mRNAs in neuronal axons Gonzalo E Aranda-Abreu, Ma Elena Hernández, Abraham Soto, and Jorge Manzo PMCID: PMC1215523 Nucleic acid chaperons: a theory of an RNA-assisted protein folding Jan C Biro PMCID: PMC1232867 Boundary effects influence velocity of transverse propagation of simulated cardiac action potentials Nicholas Sperelakis, Bijoy Kalloor, and Lakshminarayanan Ramasamy PMCID: PMC1236963 A comparative study of a theoretical neural net model with MEG data from epileptic patients and normal individuals A Kotini, P Anninos, AN Anastasiadis, and D Tamiolakis PMCID: PMC1236964 Targeting MDM2 by the small molecule RITA: towards the development of new multi-target drugs against cancer L Michel Espinoza-Fonseca PMCID: PMC1243243 Volume of the effect compartment in simulations of neuromuscular block Vladimir Nigrovic, Johannes H Proost, Anton Amann, and Shashi B Bhatt PMCID: PMC1262782 Hybrid dynamic/static method for large-scale simulation of metabolism Katsuyuki Yugi, Yoichi Nakayama, Ayako Kinoshita, and Masaru Tomita PMCID: PMC1262783 Modeling the signaling endosome hypothesis: Why a drive to the nucleus is better than a (random) walk Charles L Howe PMCID: PMC1276819 A mathematical model of the euglycemic hyperinsulinemic clamp Umberto Picchini, Andrea De Gaetano, Simona Panunzi, Susanne Ditlevsen, and Geltrude Mingrone PMCID: PMC1291408 Supply-demand balance in outward-directed networks and Kleiber's law Page R Painter PMCID: PMC1325050 Analysis of variation of amplitudes in cell cycle gene expression Delong Liu, Kevin W Gaido, and Russ Wolfinger PMCID: PMC1315354 Repolarization of the action potential enabled by Na+ channel deactivation in PSpice simulation of cardiac muscle propagation Lakshminarayanan Ramasamy and Nicholas Sperelakis PMCID: PMC1326226 A Global Workspace perspective on mental disorders Rodrick Wallace PMCID: PMC1343591 Reviews Vasculature deprivation – induced osteonecrosis of the rat femoral head as a model for therapeutic trials Jacob Bejar, Eli Peled, and Jochanan H Boss PMCID: PMC1208957 Three subsets of sequence complexity and their relevance to biopolymeric information David L Abel and Jack T Trevors PMCID: PMC1208958 Data from necropsy studies and in vitro tissue studies lead to a model for allometric scaling of basal metabolic rate Page R Painter PMCID: PMC1262780 Neurogenetic interactions and aberrant behavioral co-morbidity of attention deficit hyperactivity disorder (ADHD): dispelling myths David E Comings, Thomas JH Chen, Kenneth Blum, Julie F Mengucci, Seth H Blum, and Brian Meshkin PMCID: PMC1352384 |
