| | Commentaries An immune reaction may be necessary for cancer development Richmond T Prehn PMCID: PMC1373614 Distinguishing between linear and exponential cell growth during the division cycle: Single-cell studies, cell-culture studies, and the object of cell-cycle research Stephen Cooper PMCID: PMC1402260 Cancer initiation and progression: an unsimplifiable complexity Fabio Grizzi, Antonio Di Ieva, Carlo Russo, Eldo E Frezza, Everardo Cobos, Pier Carlo Muzzio, and Maurizio Chiriva-Internati PMCID: PMC1621057 Research Common angiotensin receptor blockers may directly modulate the immune system via VDR, PPAR and CCR2b Trevor G Marshall, Robert E Lee, and Frances E Marshall PMCID: PMC1360063 Memory in astrocytes: a hypothesis Robert M Caudle PMCID: PMC1360660 Developing a realistic sexual network model of chlamydia transmission in Britain Katherine ME Turner, Elisabeth J Adams, Nigel Gay, Azra C Ghani, Catherine Mercer, and W John Edmunds PMCID: PMC1388195 Identification of metabolic system parameters using global optimization methods Pradeep K Polisetty, Eberhard O Voit, and Edward P Gatzke PMCID: PMC1413512 A stochastic model of oncogene expression and the relevance of this model to cancer therapy Francis D Alfano PMCID: PMC1373613 A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies Benjamin Ribba, Thierry Colin, and Santiago Schnell PMCID: PMC1388194 Sepsis progression and outcome: a dynamical model Sergey M Zuev, Stephen F Kingsmore, and Damian DG Gessler PMCID: PMC1420276 Computer simulation analysis of normal and abnormal development of the mammalian diaphragm Jason C Fisher and Lawrence Bodenstein PMCID: PMC1434728 Number of active transcription factor binding sites is essential for the Hes7 oscillator Stefan Zeiser, H Volkmar Liebscher, Hendrik Tiedemann, Isabel Rubio-Aliaga, Gerhard KH Przemeck, Martin Hrabé de Angelis, and Gerhard Winkler PMCID: PMC1402261 A model for generating circadian rhythm by coupling ultradian oscillators Verner Paetkau, Roderick Edwards, and Reinhard Illner PMCID: PMC1402262 A method for the generation of standardized qualitative dynamical systems of regulatory networks Luis Mendoza and Ioannis Xenarios PMCID: PMC1440308 Effect of transverse gap-junction channels on transverse propagation in an enlarged PSpice model of cardiac muscle Lakshminarayanan Ramasamy and Nicholas Sperelakis PMCID: PMC1440307 Amino acid size, charge, hydropathy indices and matrices for protein structure analysis JC Biro PMCID: PMC1450267 The time-profile of cell growth in fission yeast: model selection criteria favoring bilinear models over exponential ones Peter Buchwald and Akos Sveiczer PMCID: PMC1444923 Binary gene induction and protein expression in individual cells Qiang Zhang, Melvin E Andersen, and Rory B Conolly PMCID: PMC1488830 A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data Wenhong Fan, Najma Khalid, Andrew R Hallahan, James M Olson, and Lue Ping Zhao PMCID: PMC1502129 Explaining individual variation in patterns of mass loss in breeding birds Sean A Rands, Innes C Cuthill, and Alasdair I Houston PMCID: PMC1481530 Stochastic modeling of oligodendrocyte generation in cell culture: model validation with time-lapse data Ollivier Hyrien, Ibro Ambeskovic, Margot Mayer-Proschel, Mark Noble, and Andrei Yakovlev PMCID: PMC1481529 Free radical theory of autoimmunity Subburaj Kannan PMCID: PMC1508139 A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles Tomoya Kitayama, Ayako Kinoshita, Masahiro Sugimoto, Yoichi Nakayama, and Masaru Tomita PMCID: PMC1550393 Parameter estimation in biochemical systems models with alternating regression I-Chun Chou, Harald Martens, and Eberhard O Voit PMCID: PMC1586003 Redox-mediated bypass of restriction point via skipping of G1pm Arnold Hoffman, James J Greene, Lee M Spetner, and Michael Burke PMCID: PMC1557840 Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets Vivek Kumar Singh and Indira Ghosh PMCID: PMC1563452 Indications that "codon boundaries" are physico-chemically defined and that protein-folding information is contained in the redundant exon bases Jan Charles Biro PMCID: PMC1560374 Propagation velocity profile in a cross-section of a cardiac muscle bundle from PSpice simulation Nicholas Sperelakis and Lakshminarayanan Ramasamy PMCID: PMC1578564 CapZ-lipid membrane interactions: a computer analysis James Smith, Gerold Diez, Anna H Klemm, Vitali Schewkunow, and Wolfgang H Goldmann PMCID: PMC1564000 Pulsatile blood flow, shear force, energy dissipation and Murray's Law Page R Painter, Patrik Edén, and Hans-Uno Bengtsson PMCID: PMC1590016 Moderate exercise and chronic stress produce counteractive effects on different areas of the brain by acting through various neurotransmitter receptor subtypes: A hypothesis Suptendra N Sarbadhikari and Asit K Saha PMCID: PMC1592480 Predicting iron and folate deficiency anaemias from standard blood testing: the mechanism and implications for clinical medicine and public health in developing countries Alan E Dugdale PMCID: PMC1626451 A model of gene-gene and gene-environment interactions and its implications for targeting environmental interventions by genotype Helen M Wallace PMCID: PMC1629012 Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling Kouroush Sadegh Zadeh, Hubert J Montas, and Adel Shirmohammadi PMCID: PMC1635038 Key transmission parameters of an institutional outbreak during the 1918 influenza pandemic estimated by mathematical modelling Gabriel Sertsou, Nick Wilson, Michael Baker, Peter Nelson, and Mick G Roberts PMCID: PMC1693548 The mechanism for stochastic resonance enhancement of mammalian auditory information processing Dawei Hong, Joseph V Martin, and William M Saidel PMCID: PMC1698913 In silico experimentation with a model of hepatic mitochondrial folate metabolism H Frederik Nijhout, Michael C Reed, Shi-Ling Lam, Barry Shane, Jesse F Gregory, III, and Cornelia M Ulrich PMCID: PMC1713227 Bringing metabolic networks to life: convenience rate law and thermodynamic constraints Wolfram Liebermeister and Edda Klipp PMCID: PMC1781438 Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data Wolfram Liebermeister and Edda Klipp PMCID: PMC1781439 The biological sense of cancer: a hypothesis Raúl A Ruggiero and Oscar D Bustuoabad PMCID: PMC1764731 Reviews Protein-lipid interactions: correlation of a predictive algorithm for lipid-binding sites with three-dimensional structural data David L Scott, Gerold Diez, and Wolfgang H Goldmann PMCID: PMC1523333 The paradoxical effects of splenectomy on tumor growth Richmond T Prehn PMCID: PMC1538594 Software An object simulation model for modeling hypothetical disease epidemics – EpiFlex Brian Hanley PMCID: PMC1570461 |
