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Volume 5(1);  January 2009
Research Articles
Questioning the Ubiquity of Neofunctionalization
Todd A. Gibson and Debra S. Goldberg
PLoS Comput Biol. 2009 January; 5(1): e1000252. Published online 2009 January 2. doi: 10.1371/journal.pcbi.1000252.
PMCID: PMC2597716
Polyamine Sharing between Tubulin Dimers Favours Microtubule Nucleation and Elongation via Facilitated Diffusion
Alain Mechulam, Konstantin G. Chernov, Elodie Mucher, Loic Hamon, Patrick A. Curmi, and David Pastré
PLoS Comput Biol. 2009 January; 5(1): e1000255. Published online 2009 January 2. doi: 10.1371/journal.pcbi.1000255.
PMCID: PMC2599886
Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks
Adel Dayarian, Madalena Chaves, Eduardo D. Sontag, and Anirvan M. Sengupta
PLoS Comput Biol. 2009 January; 5(1): e1000256. Published online 2009 January 2. doi: 10.1371/journal.pcbi.1000256.
PMCID: PMC2599888
Predicting Cellular Growth from Gene Expression Signatures
Edoardo M. Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A. Caudy, Maitreya J. Dunham, James R. Broach, David Botstein, and Olga G. Troyanskaya
PLoS Comput Biol. 2009 January; 5(1): e1000257. Published online 2009 January 2. doi: 10.1371/journal.pcbi.1000257.
PMCID: PMC2599889
Evolutionary Sequence Modeling for Discovery of Peptide Hormones
Kemal Sonmez, Naunihal T. Zaveri, Ilan A. Kerman, Sharon Burke, Charles R. Neal, Xinmin Xie, Stanley J. Watson, and Lawrence Toll
PLoS Comput Biol. 2009 January; 5(1): e1000258. Published online 2009 January 9. doi: 10.1371/journal.pcbi.1000258.
PMCID: PMC2603333
State Based Model of Long-Term Potentiation and Synaptic Tagging and Capture
Adam B. Barrett, Guy O. Billings, Richard G. M. Morris, and Mark C. W. van Rossum
PLoS Comput Biol. 2009 January; 5(1): e1000259. Published online 2009 January 16. doi: 10.1371/journal.pcbi.1000259.
PMCID: PMC2603667
Deterministic Mechanical Model of T-Killer Cell Polarization Reproduces the Wandering of Aim between Simultaneously Engaged Targets
Mun Ju Kim and Ivan V. Maly
PLoS Comput Biol. 2009 January; 5(1): e1000260. Published online 2009 January 9. doi: 10.1371/journal.pcbi.1000260.
PMCID: PMC2603019
An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors
Katherine V. Wendelsdorf, Zhuo Song, Yang Cao, and David C. Samuels
PLoS Comput Biol. 2009 January; 5(1): e1000261. Published online 2009 January 9. doi: 10.1371/journal.pcbi.1000261.
PMCID: PMC2603287
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods
Adrian M. Altenhoff and Christophe Dessimoz
PLoS Comput Biol. 2009 January; 5(1): e1000262. Published online 2009 January 16. doi: 10.1371/journal.pcbi.1000262.
PMCID: PMC2612752
Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins
Thorsten Lenser, Günter Theißen, and Peter Dittrich
PLoS Comput Biol. 2009 January; 5(1): e1000264. Published online 2009 January 16. doi: 10.1371/journal.pcbi.1000264.
PMCID: PMC2612583
Action Potential Initiation in the Hodgkin-Huxley Model
Lucy J. Colwell and Michael P. Brenner
PLoS Comput Biol. 2009 January; 5(1): e1000265. Published online 2009 January 16. doi: 10.1371/journal.pcbi.1000265.
PMCID: PMC2607014
Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties
Wenxu Tong, Ying Wei, Leonel F. Murga, Mary Jo Ondrechen, and Ronald J. Williams
PLoS Comput Biol. 2009 January; 5(1): e1000266. Published online 2009 January 16. doi: 10.1371/journal.pcbi.1000266.
PMCID: PMC2612599
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