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Volume 4(12);  December 2008
Perspective
I Am Not a Scientist, I Am a Number
Philip E. Bourne and J. Lynn Fink
PLoS Comput Biol. 2008 December; 4(12): e1000247. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000247.
PMCID: PMC2586848
Research Articles
Spontaneous Reaction Silencing in Metabolic Optimization
Takashi Nishikawa, Natali Gulbahce, and Adilson E. Motter
PLoS Comput Biol. 2008 December; 4(12): e1000236. Published online 2008 December 5. doi: 10.1371/journal.pcbi.1000236.
PMCID: PMC2582435
Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment
Da-Wei Li, Sandipan Mohanty, Anders Irbäck, and Shuanghong Huo
PLoS Comput Biol. 2008 December; 4(12): e1000238. Published online 2008 December 5. doi: 10.1371/journal.pcbi.1000238.
PMCID: PMC2583953
Encoding of Naturalistic Stimuli by Local Field Potential Spectra in Networks of Excitatory and Inhibitory Neurons
Alberto Mazzoni, Stefano Panzeri, Nikos K. Logothetis, and Nicolas Brunel
PLoS Comput Biol. 2008 December; 4(12): e1000239. Published online 2008 December 12. doi: 10.1371/journal.pcbi.1000239.
PMCID: PMC2585056
Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression
Ha Youn Lee, Alan S. Perelson, Su-Chan Park, and Thomas Leitner
PLoS Comput Biol. 2008 December; 4(12): e1000240. Published online 2008 December 12. doi: 10.1371/journal.pcbi.1000240.
PMCID: PMC2602878
Disordered Flanks Prevent Peptide Aggregation
Sanne Abeln and Daan Frenkel
PLoS Comput Biol. 2008 December; 4(12): e1000241. Published online 2008 December 19. doi: 10.1371/journal.pcbi.1000241.
PMCID: PMC2588114
Dependence of Bacterial Chemotaxis on Gradient Shape and Adaptation Rate
Nikita Vladimirov, Linda Løvdok, Dirk Lebiedz, and Victor Sourjik
PLoS Comput Biol. 2008 December; 4(12): e1000242. Published online 2008 December 19. doi: 10.1371/journal.pcbi.1000242.
PMCID: PMC2588534
Malleable Machines in Transcription Regulation: The Mediator Complex
Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, and Monika Fuxreiter
PLoS Comput Biol. 2008 December; 4(12): e1000243. Published online 2008 December 19. doi: 10.1371/journal.pcbi.1000243.
PMCID: PMC2588115
Mechanics and Dynamics of X-Chromosome Pairing at X Inactivation
Antonio Scialdone and Mario Nicodemi
PLoS Comput Biol. 2008 December; 4(12): e1000244. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000244.
PMCID: PMC2592697
Association Rate Constants of Ras-Effector Interactions Are Evolutionarily Conserved
Christina Kiel, Dorothee Aydin, and Luis Serrano
PLoS Comput Biol. 2008 December; 4(12): e1000245. Published online 2008 December 19. doi: 10.1371/journal.pcbi.1000245.
PMCID: PMC2588540
A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines
Nora C. Toussaint, Pierre Dönnes, and Oliver Kohlbacher
PLoS Comput Biol. 2008 December; 4(12): e1000246. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000246.
PMCID: PMC2588662
Tag-Trigger-Consolidation: A Model of Early and Late Long-Term-Potentiation and Depression
Claudia Clopath, Lorric Ziegler, Eleni Vasilaki, Lars Büsing, and Wulfram Gerstner
PLoS Comput Biol. 2008 December; 4(12): e1000248. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000248.
PMCID: PMC2596310
Search Algorithms as a Framework for the Optimization of Drug Combinations
Diego Calzolari, Stefania Bruschi, Laurence Coquin, Jennifer Schofield, Jacob D. Feala, John C. Reed, Andrew D. McCulloch, and Giovanni Paternostro
PLoS Comput Biol. 2008 December; 4(12): e1000249. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000249.
PMCID: PMC2590660
Identification of Mechanosensitive Genes during Embryonic Bone Formation
Niamh C. Nowlan, Patrick J. Prendergast, and Paula Murphy
PLoS Comput Biol. 2008 December; 4(12): e1000250. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000250.
PMCID: PMC2592698
The Morphological Identity of Insect Dendrites
Hermann Cuntz, Friedrich Forstner, Juergen Haag, and Alexander Borst
PLoS Comput Biol. 2008 December; 4(12): e1000251. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000251.
PMCID: PMC2588660
A Common Cortical Circuit Mechanism for Perceptual Categorical Discrimination and Veridical Judgment
Feng Liu and Xiao-Jing Wang
PLoS Comput Biol. 2008 December; 4(12): e1000253. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000253.
PMCID: PMC2596311
Game Theory of Mind
Wako Yoshida, Ray J. Dolan, and Karl J. Friston
PLoS Comput Biol. 2008 December; 4(12): e1000254. Published online 2008 December 26. doi: 10.1371/journal.pcbi.1000254.
PMCID: PMC2596313
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