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Software Installed on Jacquard

NERSC staff are actively building and installing tools and applications on Jacquard. Please contact consult@nersc.gov if a particular piece of desired software is not present.

Jacquard Software List

The following table lists software installed on Jacquard. Software is available through the modules software management system where a module name is given.

Click on the link called "NERSC" in the Docs column for information about using the software at NERSC.

Jacquard Operating System Software

PackagePlatformVersionModule Docs
Linux jacquard Enterprise Server 9 not needed NERSC; Vendor
PBS Pro jacquard 7.0.0 not needed  Vendor
(*) Denotes limited support

Jacquard Parallel Programming Libraries

PackagePlatformVersionModule Docs
Global Arrays jacquard 3.3 (64-bit) ga NERSC; Vendor
MVAPICH MPI jacquard 0.9.5-mlx1.0.1 mvapich NERSC; Vendor
(*) Denotes limited support

Compilers/Languages

PackagePlatformVersionModule Docs
as jacquard 2.15.90.0.1.1 none  Vendor
gcc jacquard 4.0.2 gcc NERSC; Vendor
java jacquard 1.6.0 java  Vendor
Pathscale jacquard 2.3 path/2.3 NERSC; Vendor
Pathscale jacquard 2.4 path/2.4 NERSC; Vendor
Pathscale jacquard 2.5 path/2.5 NERSC; Vendor
Pathscale jacquard 3.0 path/3.0 NERSC; Vendor
Pathscale jacquard 3.1 path NERSC; Vendor
Titanium jacquard dev* titanium/dev  Vendor
Titanium jacquard dist* titanium  Vendor
UPC jacquard stable* upc NERSC; Vendor
(*) Denotes limited support

Mathematical Libraries

ACML Math Library

AMD provides a highly optimized library of BLAS, LAPACK and FFT routines, the AMD Core Math Library (ACML) which is described at the ACML User Guide. This library is installed on Jacquard and can be used with both the PathScale and GNU compilers. To use it with the PathScale compilers, load the acml module, and compile and link with the $ACML flag. To use it with the GNU compilers, load the acml_gcc module, and compile and link with the $ACML flag.

PackagePlatformVersionModule Docs
ACML jacquard 2.6.0 acml/2.6.0 NERSC; Vendor
ACML jacquard 3.0.0 acml/3.0.0 NERSC; Vendor
ACML jacquard 3.1.0 acml/3.1.0 NERSC; Vendor
ACML jacquard 3.6.0 acml/3.6.0 NERSC; Vendor
ACML jacquard 4.0.0 acml NERSC; Vendor
appspack jacquard 5.0.1* appspack  Vendor
fftw jacquard 2.1.5 fftw NERSC; Vendor
fftw jacquard 3.0.1 fftw/3.0.1 NERSC; Vendor
nag jacquard 21 nag NERSC; Vendor
nagc jacquard Mark 8 nagc  Vendor
parpack jacquard 2.1 parpack NERSC; Vendor
parpack jacquard 2.1 parpack NERSC; Vendor
petsc jacquard 2.2.1 petsc NERSC; Vendor
petsc jacquard 2.3.0 petsc/2.3.0 NERSC; Vendor
petsc jacquard 2.3.1 petsc/2.3.1 NERSC; Vendor
scalapack jacquard 1.7 scalapack NERSC; Vendor
SPRNG jacquard 1.0 sprng  Vendor
superlu jacquard 3.0 superlu NERSC; Vendor
superlu jacquard dist 2.0 superlu_dist NERSC; Vendor
(*) Denotes limited support

I/O Libraries

PackagePlatformVersionModule Docs
cdo jacquard 1.0.9 cdo NERSC; Vendor
hdf jacquard 4.2r1 hdf NERSC; Vendor
hdf5 jacquard 1.6.4 hdf5 NERSC; Vendor
hdf5 jacquard 1.6.5 hdf5/1.6.5 NERSC; Vendor
hdf5 jacquard Parallel 1.6.5 hdf5_par/1.6.5 NERSC; Vendor
hdf5 jacquard Parallel 1.6.4 hdf5_par NERSC; Vendor
nco jacquard 3.0.1 nco/3.0.1 NERSC; Vendor
nco jacquard 3.9.1 nco NERSC; Vendor
ncview jacquard 1.93c ncview NERSC; Vendor
netcdf jacquard 3.6.0 netcdf/3.6.0 NERSC; Vendor
netcdf jacquard 3.6.2 netcdf NERSC; Vendor
Parallel NetCDF jacquard 1.0.2pre pnetcdf NERSC; Vendor
(*) Denotes limited support

Visualization Libraries

PackagePlatformVersionModule Docs
ncar jacquard 4.4.0 ncar/4.4.0 NERSC; Vendor
ncar jacquard 4.4.2 ncar NERSC; Vendor
ncar jacquard 5.0.0 ncar/5.0.0 NERSC; Vendor
pgplot jacquard 5.2* pgplot  Vendor
(*) Denotes limited support

Code Optimization and Performance Tools

PackagePlatformVersionModule Docs
IPM jacquard 0.918 ipm  Vendor
papi jacquard 3.1.0 papi NERSC; Vendor
tau jacquard 2.16.4 tau NERSC; Vendor
(*) Denotes limited support

Code Debugging Tools

PackagePlatformVersionModule Docs
gdb jacquard 6.4 none  Vendor
totalview jacquard 8.1.0-0 totalview NERSC; Vendor
totalview jacquard 8.2.0-0 totalview/8.2.0-0 NERSC; Vendor
(*) Denotes limited support

Applications: Chemistry

PackagePlatformVersionModule Docs
amber jacquard 8.0 amber/8.0 NERSC; Vendor
amber jacquard 9.0 amber NERSC; Vendor
amber jacquard pre 9.0 amber NERSC; Vendor
gamess jacquard 2004.11* gamess NERSC; Vendor
gamess jacquard 2007.03* gamess/2007.03 NERSC; Vendor
gaussian03 jacquard c2 g03 NERSC; Vendor
gaussian03 jacquard d2 g03/d2 NERSC; Vendor
gromacs jacquard 3.3 gromacs NERSC; Vendor
molpro jacquard 2002.6* molpro NERSC; Vendor
molpro jacquard 2006.1* molpro/2006.1_serial NERSC; Vendor
molpro jacquard 2006.1* molpro/2006.1 NERSC; Vendor
namd jacquard 2.5 namd/2.5 NERSC; Vendor
namd jacquard 2.6 namd/2.6 NERSC; Vendor
namd jacquard 2.6b1 namd/2.6b1 NERSC; Vendor
nwchem jacquard 4.7 nwchem/4.7 NERSC; Vendor
nwchem jacquard 5.0 nwchem NERSC; Vendor
q-chem jacquard 3.1 qchem NERSC; Vendor
q-chem jacquard 3.1 serial qchem/3.1s NERSC; Vendor
(*) Denotes limited support

Applications: Material Sciences

PackagePlatformVersionModule Docs
ABINIT jacquard 5.4.4* abinit/5.4 NERSC; Vendor
siesta jacquard 2.0.1* siesta/2.0.1 NERSC; Vendor
vasp jacquard 4.6.28 vasp/4.6.28 NERSC; Vendor
vasp jacquard 4.6.31 vasp NERSC; Vendor
(*) Denotes limited support

Applications: Climate

PackagePlatformVersionModule Docs
(*) Denotes limited support

Applications: Visualization

PackagePlatformVersionModule Docs
ghostview jacquard 8.51 gs NERSC; Vendor
gnuplot jacquard 4.1 not needed NERSC; Vendor
gnuplot jacquard 4.2.3 gnuplot/4.2.3 NERSC; Vendor
grace jacquard 5.1.19 grace NERSC; Vendor
idl jacquard 6.2 idl/6.2 NERSC; Vendor
idl jacquard 6.3 idl/6.3 NERSC; Vendor
idl jacquard 6.4 idl NERSC; Vendor
ImageJ jacquard 1.41* imagej  Vendor
imagemagick jacquard 6.2.5 imagemagick NERSC; Vendor
imagemagick jacquard 6.3.9 imagemagick NERSC; Vendor
vmd jacquard 1.8.3 vmd NERSC; Vendor
(*) Denotes limited support

Applications: Mathematics

PackagePlatformVersionModule Docs
mathematica jacquard 5.2 mathematica NERSC; Vendor
matlab jacquard 7.1.0.R14 matlab/7.1.0.R14 NERSC; Vendor
matlab jacquard R2006a matlab NERSC; Vendor
(*) Denotes limited support

Applications: Bioinformatics

PackagePlatformVersionModule Docs
blast jacquard 2.2.6 blast NERSC; Vendor
(*) Denotes limited support

Applications: Physics

PackagePlatformVersionModule Docs
(*) Denotes limited support

Applications: General

PackagePlatformVersionModule Docs
Acroread jacquard 5.0.9 none  Vendor
MySQL jacquard 4.1.16 mysql NERSC; Vendor
(*) Denotes limited support

General Programming Tools and Utilities

PackagePlatformVersionModule Docs
cvs jacquard 1.11.14 none NERSC; Vendor
GNU jacquard 1.0 GNU NERSC; Vendor
modules jacquard 3.1.6 not needed NERSC; Vendor
perl jacquard 5.8.3 not needed NERSC; Vendor
python jacquard 2.3.3 not needed NERSC; Vendor
rcs jacquard 5.7* rcs  Vendor
(*) Denotes limited support
PackagePlatformVersionModule Docs
bbcp jacquard 07.11.09.01.0 none NERSC; Vendor
(*) Denotes limited support
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