| | Articles Growth-regulated expression and G0-specific turnover of the mRNA that encodes URH49, a mammalian DExH/D box protein that is highly related to the mRNA export protein UAP56 Anne Pryor, Luh Tung, Zhe Yang, Fehmida Kapadia, Tien-Hsien Chang, and Lee F. Johnson Nucleic Acids Res. 2004; 32(6): 1857–1865. Published online 2004 March 26. doi: 10.1093/nar/gkh347.PMCID: PMC390356 Distinct requirements for Ku in N nucleotide addition at V(D)J- and non-V(D)J-generated double-strand breaks Zoltan Sandor, Monica L. Calicchio, R. Geoffrey Sargent, David B. Roth, and John H. Wilson Nucleic Acids Res. 2004; 32(6): 1866–1873. Published online 2004 March 26. doi: 10.1093/nar/gkh502.PMCID: PMC390357 Transcription factor decoy oligonucleotides modified with locked nucleic acids: an in vitro study to reconcile biostability with binding affinity Rita Crinelli, Marzia Bianchi, Lucia Gentilini, Linda Palma, Mads D. Sørensen, Torsten Bryld, Ravindra B. Babu, Khalil Arar, Jesper Wengel, and Mauro Magnani Nucleic Acids Res. 2004; 32(6): 1874–1885. Published online 2004 March 29. doi: 10.1093/nar/gkh503.PMCID: PMC390358 Structural and functional analysis of Mre11-3 L. Matthew Arthur, Karin Gustausson, Karl-Peter Hopfner, Christian T. Carson, Travis H. Stracker, Annette Karcher, Diana Felton, Matthew D. Weitzman, John Tainer, and James P. Carney Nucleic Acids Res. 2004; 32(6): 1886–1893. Published online 2004 March 26. doi: 10.1093/nar/gkh343.PMCID: PMC390353 Human replication protein A (RPA) binds a primer–template junction in the absence of its major ssDNA-binding domains Pavel E. Pestryakov, Denis Y. Khlimankov, Elena Bochkareva, Alexey Bochkarev, and Olga I. Lavrik Nucleic Acids Res. 2004; 32(6): 1894–1903. Published online 2004 March 26. doi: 10.1093/nar/gkh346.PMCID: PMC390355 Characterization of a novel RNA polymerase II arrest site which lacks a weak 3′ RNA–DNA hybrid Peter J. Hawryluk, Andrea Újvári, and Donal S. Luse Nucleic Acids Res. 2004; 32(6): 1904–1916. Published online 2004 March 26. doi: 10.1093/nar/gkh505.PMCID: PMC390359 Humanized telomeres and an attempt to express a functional human telomerase in yeast Amadou Bah, François Bachand, Éveline Clair, Chantal Autexier, and Raymund J. Wellinger Nucleic Acids Res. 2004; 32(6): 1917–1927. Published online 2004 March 26. doi: 10.1093/nar/gkh511.PMCID: PMC390362 Covalently attached oligodeoxyribonucleotides induce RNase activity of a short peptide and modulate its base specificity Nadezhda L. Mironova, Dmytryi V. Pyshnyi, Eugenya M. Ivanova, Marina A. Zenkova, Hans J. Gross, and Valentin V. Vlassov Nucleic Acids Res. 2004; 32(6): 1928–1936. Published online 2004 March 26. doi: 10.1093/nar/gkh514.PMCID: PMC390365 A third base pair for the polymerase chain reaction: inserting isoC and isoG Scott C. Johnson, Christopher B. Sherrill, David J. Marshall, Michael J. Moser, and James R. Prudent Nucleic Acids Res. 2004; 32(6): 1937–1941. Published online 2004 March 29. doi: 10.1093/nar/gkh522.PMCID: PMC390373 Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition Eric J. Perkins, Barbara L. Kee, and Dale A. Ramsden Nucleic Acids Res. 2004; 32(6): 1942–1947. Published online 2004 March 29. doi: 10.1093/nar/gkh523.PMCID: PMC390374 Identifying transcriptional regulatory sites in the human genome using an integrated system Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, and Shir-Ly Huang Nucleic Acids Res. 2004; 32(6): 1948–1956. Published online 2004 March 29. doi: 10.1093/nar/gkh345.PMCID: PMC390354 Multiple domains of the Receptor-Interacting Protein 140 contribute to transcription inhibition Audrey Castet, Abdelhay Boulahtouf, Gwennaëlle Versini, Sandrine Bonnet, Patrick Augereau, Françoise Vignon, Saadi Khochbin, Stéphan Jalaguier, and Vincent Cavaillès Nucleic Acids Res. 2004; 32(6): 1957–1966. Published online 2004 April 1. doi: 10.1093/nar/gkh524.PMCID: PMC390375 Selective inhibition of the DNA-dependent protein kinase (DNA-PK) by the radiosensitizing agent caffeine Wesley D. Block, Dennis Merkle, Katheryn Meek, and Susan P. Lees-Miller Nucleic Acids Res. 2004; 32(6): 1967–1972. Published online 2004 April 1. doi: 10.1093/nar/gkh508.PMCID: PMC390360 Transcriptional organization of the Clostridium acetobutylicum genome Carlos J. Paredes, Isidore Rigoutsos, and E. Terry Papoutsakis Nucleic Acids Res. 2004; 32(6): 1973–1981. Published online 2004 April 1. doi: 10.1093/nar/gkh509.PMCID: PMC390361 Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy Joongbaek Kim, Shige H. Yoshimura, Kohji Hizume, Ryosuke L. Ohniwa, Akira Ishihama, and Kunio Takeyasu Nucleic Acids Res. 2004; 32(6): 1982–1992. Published online 2004 April 1. doi: 10.1093/nar/gkh512.PMCID: PMC390363 ESF1 is required for 18S rRNA synthesis in Saccharomyces cerevisiae Wen-Tao Peng, Nevan J. Krogan, Dawn P. Richards, Jack F. Greenblatt, and Timothy R. Hughes Nucleic Acids Res. 2004; 32(6): 1993–1999. Published online 2004 March 31. doi: 10.1093/nar/gkh518.PMCID: PMC390369 Energetic basis for selective recognition of T·G mismatched base pairs in DNA by imidazole-rich polyamides Eilyn R. Lacy, Binh Nguyen, Minh Le, Kari K. Cox, Caroline O'Hare, John A. Hartley, Moses Lee, and W. David Wilson Nucleic Acids Res. 2004; 32(6): 2000–2007. Published online 2004 April 2. doi: 10.1093/nar/gkh515.PMCID: PMC390366 2′-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro Byong Hoon Yoo, Elena Bochkareva, Alexey Bochkarev, Tung-Chung Mou, and Donald M. Gray Nucleic Acids Res. 2004; 32(6): 2008–2016. Published online 2004 April 2. doi: 10.1093/nar/gkh516.PMCID: PMC390367 Chemical syntheses of inhibitory substrates of the RNA–RNA ligation reaction catalyzed by the hairpin ribozyme Archna P. Massey and Snorri Th. Sigurdsson Nucleic Acids Res. 2004; 32(6): 2017–2022. Published online 2004 April 2. doi: 10.1093/nar/gkh517.PMCID: PMC390368 Structural features of the rice chromosome 4 centromere Yu Zhang, Yuchen Huang, Lei Zhang, Ying Li, Tingting Lu, Yiqi Lu, Qi Feng, Qiang Zhao, Zhukuan Cheng, Yongbiao Xue, Rod A. Wing, and Bin Han Nucleic Acids Res. 2004; 32(6): 2023–2030. Published online 2004 April 2. doi: 10.1093/nar/gkh521.PMCID: PMC390372 Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro Jean-Leon Chong, Ray-Yuan Chuang, Luh Tung, and Tien-Hsien Chang Nucleic Acids Res. 2004; 32(6): 2031–2038. Published online 2004 April 2. doi: 10.1093/nar/gkh519.PMCID: PMC390370 An RNA secondary structure bias for non-homologous reverse transcriptase-mediated deletions in vivo Mogens Duch, Maria L. Carrasco, Thomas Jespersen, Lars Aagaard, and Finn Skou Pedersen Nucleic Acids Res. 2004; 32(6): 2039–2048. Published online 2004 April 6. doi: 10.1093/nar/gkh513.PMCID: PMC390364 The spread of LAGLIDADG homing endonuclease genes in rDNA Peik Haugen and Debashish Bhattacharya Nucleic Acids Res. 2004; 32(6): 2049–2057. Published online 2004 April 6. doi: 10.1093/nar/gkh520.PMCID: PMC390371 NAR Methods Online Molecular analysis of high-copy insertion sites in maize A. Mark Settles, Susan Latshaw, and Donald R. McCarty Nucleic Acids Res. 2004; 32(6): e54. Published online 2004 April 1. doi: 10.1093/nar/gnh052.PMCID: PMC390377 Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR Matthew P. Johnson, Larisa M. Haupt, and Lyn R. Griffiths Nucleic Acids Res. 2004; 32(6): e55. Published online 2004 March 26. doi: 10.1093/nar/gnh046.PMCID: PMC390376 Instant evaluation of the absolute initial number of cDNA copies from a single real-time PCR curve Stéphane Swillens, Jean-Christophe Goffard, Yoann Maréchal, Alban de Kerchove d'Exaerde, and Hakim El Housni Nucleic Acids Res. 2004; 32(6): e56. Published online 2004 March 29. doi: 10.1093/nar/gnh053.PMCID: PMC390378 Dual FRET molecular beacons for mRNA detection in living cells Philip J. Santangelo, Brent Nix, Andrew Tsourkas, and Gang Bao Nucleic Acids Res. 2004; 32(6): e57. Published online 2004 April 14. doi: 10.1093/nar/gnh062.PMCID: PMC390379 Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells Nitin Nitin, Philip J. Santangelo, Gloria Kim, Shuming Nie, and Gang Bao Nucleic Acids Res. 2004; 32(6): e58. Published online 2004 April 14. doi: 10.1093/nar/gnh063.PMCID: PMC390380 |