| | Articles Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus J. A. Ferreiro, N. G. Powell, N. Karabetsou, N. A. Kent, J. Mellor, and R. Waters PMCID: PMC390324 Telomere-bound TRF1 and TRF2 stall the replication fork at telomeric repeats Rieko Ohki and Fuyuki Ishikawa PMCID: PMC390322 Selenium derivatization and crystallization of DNA and RNA oligonucleotides for X-ray crystallography using multiple anomalous dispersion Nicolas Carrasco, Yuri Buzin, Elizabeth Tyson, Elizer Halpert, and Zhen Huang PMCID: PMC390325 Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum Hideko Urushihara, Takahiro Morio, Tamao Saito, Yuji Kohara, Eiko Koriki, Hiroshi Ochiai, Mineko Maeda, Jeffrey G. Williams, Ikuo Takeuchi, and Yoshimasa Tanaka PMCID: PMC390320 Putative involvement of the histone acetyltransferase Tip60 in ribosomal gene transcription Kalipso Halkidou, Ian R. Logan, Susan Cook, David E. Neal, and Craig N. Robson PMCID: PMC390321 RNA conformational classes Bohdan Schneider, Zdeněk Morávek, and Helen M. Berman PMCID: PMC390331 Inhibition of hepatitis C virus IRES-mediated translation by small RNAs analogous to stem–loop structures of the 5′-untranslated region Partho Sarothi Ray and Saumitra Das PMCID: PMC390326 Identification of 20 microRNAs from Oryza sativa Jia-Fu Wang, Hui Zhou, Yue-Qin Chen, Qing-Jun Luo, and Liang-Hu Qu PMCID: PMC390330 Functional interactions between alternatively spliced forms of Pax6 in crystallin gene regulation and in haploinsufficiency Bharesh K. Chauhan, Ying Yang, Květa Cveklová, and Aleš Cvekl PMCID: PMC390332 The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties Akiko Kozaki, Sarah Hake, and Joseph Colasanti PMCID: PMC390334 Conservation of RNA structures enables TNV and BYDV 5′ and 3′ elements to cooperate synergistically in cap-independent translation Frank Meulewaeter, Rosalinde van Lipzig, Alexander P. Gultyaev, Cornelis W. A. Pleij, Daniel Van Damme, Marc Cornelissen, and Gerben van Eldik PMCID: PMC390335 Bioinformatical assay of human gene morbidity Fyodor A. Kondrashov, Aleksey Y. Ogurtsov, and Alexey S. Kondrashov PMCID: PMC390328 Chemical synthesis and translesion replication of a cis–syn cyclobutane thymine–uracil dimer Kohei Takasawa, Chikahide Masutani, Fumio Hanaoka, and Shigenori Iwai PMCID: PMC390339 Secondary structure and stability of the selenocysteine insertion sequences (SECIS) for human thioredoxin reductase and glutathione peroxidase Andres Ramos, Andrew N. Lane, David Hollingworth, and Teresa W.-M. Fan PMCID: PMC390329 A novel strategy for selection of allosteric ribozymes yields RiboReporter™ sensors for caffeine and aspartame Alicia Ferguson, Ryan M. Boomer, Markus Kurz, Sara C. Keene, John L. Diener, Anthony D. Keefe, Charles Wilson, and Sharon T. Cload PMCID: PMC390333 The α4 residues of human DNA topoisomerase IIα function in enzymatic activity and anticancer drug sensitivity Namiko Suda, Yasutomo Ito, Tsuneo Imai, Toyone Kikumori, Akihiko Kikuchi, Yukihiro Nishiyama, Shonen Yoshida, and Motoshi Suzuki PMCID: PMC390336 Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Igor B. Rogozin, Eugene V. Koonin, and David J. Lipman PMCID: PMC390323 Silencer elements as possible inhibitors of pseudoexon splicing Manuela Sironi, Giorgia Menozzi, Laura Riva, Rachele Cagliani, Giacomo P. Comi, Nereo Bresolin, Roberto Giorda, and Uberto Pozzoli PMCID: PMC390338 MUSCLE: multiple sequence alignment with high accuracy and high throughput Robert C. Edgar PMCID: PMC390337 Calculating the statistical significance of physical clusters of co-regulated genes in the genome: the role of chromatin in domain-wide gene regulation Cheng-Fu Chang, Ka-Man Wai, and Hugh G. Patterton PMCID: PMC390345 Translational regulation of BACE-1 expression in neuronal and non-neuronal cells Davide De Pietri Tonelli, Marija Mihailovich, Alessandra Di Cesare, Franca Codazzi, Fabio Grohovaz, and Daniele Zacchetti PMCID: PMC390341 The major form of MeCP2 has a novel N-terminus generated by alternative splicing Skirmantas Kriaucionis and Adrian Bird PMCID: PMC390342 Pronouced instability of tandem IU base pairs in RNA Martin J. Serra, Patricia E. Smolter, and Eric Westhof PMCID: PMC390343 A conformational change in TFIIB is required for activator-mediated assembly of the preinitiation complex James A. Glossop, Tim R. Dafforn, and Stefan G. E. Roberts PMCID: PMC390344 The CtBP2 co-repressor is regulated by NADH-dependent dimerization and possesses a novel N-terminal repression domain Sharon S. C. Thio, Joseph V. Bonventre, and Stephen I-Hong Hsu PMCID: PMC390340 Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates Alan Willse, Timothy M. Straub, Sharon C. Wunschel, Jack A. Small, Douglas R. Call, Don S. Daly, and Darrell P. Chandler PMCID: PMC390327 NAR Methods Online Enhanced transfection efficiency of a systemically delivered tumor-targeting immunolipoplex by inclusion of a pH-sensitive histidylated oligolysine peptide Wei Yu, Kathleen F. Pirollo, Bin Yu, Antonina Rait, Laiman Xiang, Weiqun Huang, Qi Zhou, Gözen Ertem, and Esther H. Chang PMCID: PMC390349 siRNA relieves chronic neuropathic pain Gabriele Dorn, Sadhana Patel, Glen Wotherspoon, Maja Hemmings-Mieszczak, Jane Barclay, Francois J. C. Natt, Pierre Martin, Stuart Bevan, Alyson Fox, Pam Ganju, William Wishart, and Jonathan Hall PMCID: PMC390346 Microarray segmentation methods significantly influence data precision Ahmed Ashour Ahmed, Maria Vias, N. Gopalakrishna Iyer, Carlos Caldas, and James D. Brenton PMCID: PMC390347 Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks Shailender Nagpal, Mazen W. Karaman, Michelle M. Timmerman, Vincent V. Ho, Brian L. Pike, and Joseph G. Hacia PMCID: PMC390348 Artificial genetic selection for an efficient translation initiation site for expression of human RACK1 gene in Escherichia coli Olga B. Zhelyabovskaya, Yuri A. Berlin, and Klara R. Birikh PMCID: PMC390350 Sensitive and specific detection of K-ras mutations in colon tumors by short oligonucleotide mass analysis Matilde E. Lleonart, Santiago Ramón y Cajal, John D. Groopman, and Marlin D. Friesen PMCID: PMC390351 |
