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CCAP BAC Clones
Chromosome X
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Map Coordinate
|
BAC id
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Placement on genome1
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Placement summary3
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BAC End2
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Insert Sequence2
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STS id2
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Xp22.32b |
RP11-366M24 |
chrX 5Mb | |
AZ303248 SP6,
AZ303247 T7 |
AC078956 | DXS1118E |
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Xp22.31d~22.31e |
RP11-383I22 |
chrX 9Mb | |
CL423317 T7,
CL423315 SP6,
AQ533276 SP6 | | DXS1375 |
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Xp22.2 |
RP11-308F2 |
chrX 14Mb | |
CL423280 SP6,
CL423284 T7 | | DXS7951 |
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Xp22.2 |
RP11-382D24 |
chrX 12Mb | |
AZ254489 T7,
AZ254490 SP6 | | DXS7730 |
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Xp22.13d~22.13e |
RP11-568P9 |
chrX 17Mb | |
AZ254682 T7,
AZ303377 SP6 | | DXS7793 |
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Xp22.12b |
RP11-482C1 |
chrX 19Mb | |
AZ303227 T7,
AQ629987 T7,
AQ629984 SP6,
AZ303228 SP6 | |
DXS8264+ |
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Xp22.12a~22.12b |
RP11-507P24 |
chrX 20Mb | |
AZ515683 SP6+,
AZ303290 T7 | | DXS7786 |
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Xp22.12a |
RP11-497C10 |
chrX 21Mb | |
AZ254653 SP6,
AZ254652 T7 | | DXS7480 |
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Xp21.3d |
RP11-26L4 |
chrX 26Mb | |
B84600 T7,
B84599 SP6 |
AC022356 | |
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Xp21.3b |
RP11-487M22 |
chrX 28Mb | |
AZ301104 T7,
AQ631865 T7,
AZ301105 SP6 | | DXS7926 |
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Xp21.2 |
RP11-46A23 |
chrX 31Mb | |
AQ198399,
AQ198403 | | SHGC-1505 |
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Xp21.1e~21.2a |
RP11-509C1 |
chrX 31Mb | |
AZ303291 T7,
AZ303292 SP6 | | DXS7826 |
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Xp21.1a |
RP11-495K15 |
chrX 37Mb | |
AZ303207 T7,
AZ303208 SP6 | | RH35775 |
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Xp11.4e |
RP11-506C6 |
chrX 38Mb | |
AZ303203 T7,
AZ303204 SP6 | | DXS7611 |
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Xp11.4d~11.4e |
RP11-429N5 |
chrX 39Mb | |
AZ254511 T7,
AQ551510 T7,
AQ551497 SP6,
AZ254512 SP6 | | SWXD3103 |
|
Xp11.4a |
RP11-299D7 |
chrX 40Mb | |
AZ254436 T7+,
AZ254437 SP6+,
AQ504705 SP6 | | RH38747 |
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Xp11.3b |
RP11-384A17 |
chrX 43Mb | |
AZ254494 SP6,
AQ533314 T7,
AZ254493 T7 | |
RH63518+ |
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Xp11.3a |
RP11-531L8 |
chrX 44Mb | |
AZ303205 T7,
AZ303206 SP6 | | RH16599 |
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Xp11.23f |
RP11-466C12 |
chrX 47Mb | |
AZ254479 T7,
AQ635914 SP6,
AZ254480 SP6 | | DXS7629 |
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Xp11.22c~11.23a |
RP11-528A24 |
chrX 48Mb | |
AZ301109 SP6,
AZ301108 T7 | |
DXS1331+ |
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Xp11.22a |
RP11-22B10 |
chrX 51Mb | |
AQ009390 T7,
B92169 SP6,
B86117 SP6 |
AL929101 | |
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Xp11.21a |
RP11-292J24 |
chrX 54Mb | |
AZ301091 T7,
CL423347 T7,
CL423344 SP6 | | DXS7159E |
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Xp11.1a |
RP11-431N15 |
chrX 56Mb | |
AZ254513 T7,
AZ254514 SP6 |
AL354793 | RH25723 |
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Xq11.1b |
RP11-434B14 |
chrX 64Mb | |
AZ254515 T7,
AQ552291 T7,
AQ552290 SP6,
AZ254516 SP6 | | DXS7086 |
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Xq11.1b |
RP11-434B14 |
chrY 57Mb | |
AQ552290 SP6,
AZ254516 SP6,
AZ254515 T7*,
AQ552291 T7* | |
DXS7086* |
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Xq12a |
RP11-419G1 |
chrX 67Mb | |
AZ254505 T7,
AZ254506 SP6 | | DXS7838 |
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Xq13.1d |
RP11-402P6 |
chrX 70Mb | |
AZ254497 T7,
AZ254498 SP6 |
BX276092 |
DXS1517+ |
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Xq13.1e |
RP11-436L1 |
chrX 71Mb | |
AZ254646 SP6,
AZ254645 T7 | | DXS1377 |
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Xq13.2a |
RP11-451F6 |
chrX 73Mb | |
AQ586104 SP6+,
AZ254477 T7,
AZ254478 SP6 | | DXS1103E |
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Xq13.3b |
RP11-477B2 |
chrX 75Mb | |
AZ254486 SP6,
AQ636732 SP6,
AZ254485 T7,
AQ636735 T7 | | DXS1383 |
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Xq21.1a~21.1b |
RP11-297K23 |
chrX 78Mb | |
AZ254434 T7+,
AZ254435 SP6+ | | DXS6954 |
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Xq21.1d |
RP11-54F22 |
chrX 83Mb | |
AQ082140,
AQ082142 T7 |
AL389887 | DXS7135 |
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Xq21.31b |
RP11-567N15 |
chrX 87Mb | |
AZ254681 SP6,
AZ254680 T7 | | DXS7695 |
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Xq21.32a |
RP11-483J19 |
chrX 92Mb | |
AZ303289 SP6,
AQ629407 SP6,
AQ629410 T7,
AZ303288 T7 | | DXS7552 |
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Xq21.33b~21.33c |
RP11-335H4 |
chrX 94Mb | |
AZ254448 T7+,
AZ254449 SP6+ | | DXS1398 |
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Xq21.33c~21.33d |
RP11-379J18 |
chrX 97Mb | |
AZ254473 T7+,
AZ254474 SP6+,
AQ533759 T7,
AQ533757 SP6 | | DXS1465 |
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Xq21.33d~22.1a |
RP11-508G21 |
chrX 99Mb | |
AZ303375 SP6,
AZ515684 T7 | | DXS7735 |
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Xq22.1b~22.1c |
RP11-467H14 |
chrX 101Mb | |
AZ254649 SP6,
AQ630970 SP6,
AZ254648 T7,
AQ630973 T7 | | sWXD3584 |
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Xq22.2a |
RP11-572H24 |
chrX 103Mb | |
AZ254683 T7,
AZ254684 SP6 | | DXS1460 |
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Xq22.2b~22.3a |
RP11-452M1 |
chrX 106Mb | |
AZ301089 SP6,
AZ254647 T7 | | DXS1456 |
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Xq22.3c |
RP11-513O15 |
chrX 110Mb | |
AZ254657 T7,
AZ254658 SP6 | | DXS7357 |
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Xq23c |
RP11-528G12 |
chrX 114Mb | |
AZ303229 T7,
AZ303230 SP6 | |
DXS8297+ |
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Xq23d~23e |
RP11-491C15 |
chrX 116Mb | |
AZ303300 SP6,
AZ303299 T7 | | DXS7319 |
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Xq23e~24a |
RP11-331F17 |
chrX 116Mb | |
AZ254446 T7+,
AZ254447 SP6+ | | DXS7918 |
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Xq24c |
RP11-561J7 |
chrX 117Mb | |
AZ254675 SP6,
AZ254674 T7 | | DXS7274 |
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Xq24e~25a |
RP11-423F7 |
chrX 119Mb | |
AZ254507 T7,
AZ254508 SP6,
AQ549465 SP6 | | stSG2986 |
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Xq25a |
RP11-531P11 |
chrX 120Mb | |
AZ254665 T7,
AZ254666 SP6 | | DXS7316 |
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Xq25a~25b |
RP11-526E6 |
chrX 122Mb | |
AZ254663 T7,
AZ254664 SP6 | | DXS7322 |
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Xq25c |
RP11-325K14 |
chrX 122Mb | |
AZ254440 T7+,
AZ254441 SP6+,
AQ536948 T7 | | DXS7906 |
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Xq25f |
RP11-488B15 |
chrX 124Mb | |
AZ303218 SP6,
AZ303217 T7 | | RH63424 |
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Xq25h~26.1a |
RP11-383B16 |
chrX 127Mb | |
AZ254492 SP6,
AQ550758 SP6,
AQ550761 T7,
AZ254491 T7 | | DXS7359 |
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Xq26.1a~26.1b |
RP11-348J1 |
chrX 128Mb | |
AZ254460 T7+,
AZ254461 SP6+ | | DXS7865 |
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Xq26.2a |
RP11-486A7 |
chrX 130Mb | |
AZ303223 T7,
AZ303224 SP6 | | DXS7278,
sWXD1781+ |
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Xq26.2a~26.2b |
RP11-508C21 |
chrX 130Mb | |
AZ303214 SP6,
AZ303213 T7 | | DXS7278,
RH63767+,
sWXD1781+ |
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Xq26.2b |
RP11-513O11 |
chrX 132Mb | |
AZ303293 T7,
AZ303294 SP6 | | RH16248 |
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Xq26.3b |
RP11-357N12 |
chrX 133Mb | |
AZ254466 T7+,
AQ553839 T7,
AZ519469 SP6 | | DXS7503 |
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Xq26.3d~27.1a |
RP11-503I20 |
chrX 136Mb | |
AZ303212 SP6,
AZ303211 T7 | | DXS7291 |
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Xq27.2a |
RP11-533L19 |
chrX 140Mb | |
AZ303296 SP6,
AZ303295 T7 | | DXS8232 |
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Xq27.3a |
RP11-356G18 |
chrX 141Mb | |
AZ254464 T7+,
AZ254465 SP6+,
AQ535824 T7,
AQ535823 SP6 | | DXS7409 |
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Xq27.3b~27.3c |
RP11-513H18 |
chrX 142Mb | |
AZ303298 SP6,
AZ303297 T7 | | DXS7381 |
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Xq27.3c |
RP11-503O6 |
chrX 144Mb | |
AZ303216 SP6,
AZ303215 T7 | | DXS7386 |
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Xq27.3c~27.3d |
RP11-406D14 |
chrX 145Mb | |
AZ254500 SP6+,
AZ254499 T7 | | sWXD1447 |
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Xq27.3d~27.3e |
RP11-489K19 |
chrX 146Mb | |
AZ303209 T7,
AQ633285 T7,
AQ633283 SP6,
AZ303210 SP6 | | DXS7378 |
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Xq28b~28c |
RP11-337E5 |
chrX 150Mb | |
AZ254452 T7+,
AZ254453 SP6+ | | DXS7076 |
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Xq28f |
RP11-405N23 |
chrX 154Mb | |
AZ301102 T7,
AZ301103 SP6 | |
DXS7060+ |
1 FISH-mapped clone was placed on the sequenced
genome based on BAC-ends, insert sequences and STSs.
2 Sequences that are associated with the clone
and used for clone placement.  
* indicates
sequences that disagree with data in 'Placement on genome' column.  
+ indicates sequences that didn't align to the
genome or were not used for annotation.
3 Placement summary indicates sequences
used for clone placement. BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the minus orientation insert sequence STS aligned insert sequence has clone end information.
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