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CCAP BAC Clones

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Chromosome 9


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
9p24.3a RP11-88P16 chr9 1Mb AZ516926 T7,
AQ281633 T7,
AQ281631 SP6
  
9p24.2a RP11-31M2 chr9 4Mb AQ045931,
AQ045928
AL133283 
9p24.1a RP11-79K3 chr9 7Mb AQ283742 T7,
AZ519076 SP6,
AQ317572 SP6
AL157703 
9p23d RP11-19G1 chr9 9Mb CL423039 T7,
B81956 T7,
CL423034 SP6
AL390723 
9p23c RP11-87N24 chr9 10Mb AQ285710 T7 AL135790 SHGC-18065
9p22.3c~23a RP11-54D21 chr9 14Mb AQ081562,
CL423065 SP6,
AQ115140
AL449443 
9p22.3a RP11-490C5 chr9 15Mb AQ634942 T7,
AQ634941 SP6
AL390246 
9p22.2b RP11-163F8 chr9 17Mb AQ380761 SP6,
AQ380771 T7
AL133214 AFM067XD3
9p22.1b RP11-252O2 chr9 19Mb AQ478174 T7,
AQ478171 SP6
AL133281 SHGC-730
9p21.3d RP11-344A7 chr9 21Mb AQ539553 SP6,
AQ539556 T7
AL137022 
9p21.3c RP11-346N23 chr9 22Mb AQ531616 SP6,
AQ531618 T7
AL356116 
9p21.3b RP11-55P9 chr9 25Mb AQ081836,
AQ081835
AL353730 SHGC-1979
9p21.2b RP11-57P14 chr9 27Mb AQ195735,
AQ115591
AL133411 
9p21.1d RP11-159L16 chr9 29Mb AQ374033 T7,
AQ374030 SP6
AL138893 
9p21.1c RP11-402B2 chr9 31Mb   AL353728 
9p21.1a RP11-462B18 chr9 32Mb AQ634208 T7 AL157884 
9p13.3c RP11-112J3 chr9 35Mb AQ343296 T7+,
AQ313109 SP6
AL133410 SHGC-12605
9p13.2b RP11-3J10 chr9 37Mb B63794 T7,
B48799 T7,
B63793 SP6
AL138752 AA427595
9q21.11b RP11-203L2 chr9 70Mb CL423101 SP6,
CL423104 T7,
AQ420119 T7
AL354794 
9q21.11c RP11-16N10 chr9 70Mb B83639 T7,
B82556 SP6
AL358113 SHGC-34170
9q21.13a RP11-8L13 chr9 73Mb B72401 SP6,
B72402 T7
AC016411,
AL391819
SHGC-9322
9q21.13b RP11-698K16 chr9 75Mb CL423138 T7,
CL423135 SP6
AC021177 
9q21.13c RP11-235O14 chr9 76Mb   AL133548 SHGC-37393+,
SHGC-37393
9q21.31c RP11-31D18 chr9 81Mb AQ081493,
CL423169 SP6,
CL423170 T7,
AQ046123
AC023067 SHGC-20552
9q21.32a RP11-22C13 chr9 84Mb B86137 SP6,
AQ009057 T7,
B86138 T7
AL133391 SHGC-1978
9q21.33a RP11-65C15 chr9 87Mb AQ237176 SP6,
AQ237178 T7
AL161453 SHGC-5269
9q21.33c RP11-65B23 chr9 89Mb AQ193954,
AQ237132 SP6
AL160279 SHGC-12637
9q22.1b RP11-350G13 chr9 90Mb AZ516206 T7 AL158076 
9q22.2b~22.31a RP11-435D17 chr9 93Mb AQ583780 SP6,
AQ553645 T7
AL359391 
9q22.32a RP11-2B6 chr9 95Mb AQ283461 SP6,
B47731 T7
AC087784,
AL158152
 
9q22.32b RP11-80I15 chr9 96Mb AQ281229 SP6,
AQ281231 T7
AL354893 
9q22.33a RP11-23B15 chr9 99Mb B86408 SP6+,
AQ013713,
AQ013712
AL499604 SHGC-33415
9q22.33c RP11-30L7 chr9 101Mb B85216 T7+ AC073459,
AL359710
SHGC-31098
9q31.1a RP11-80H12 chr9 102Mb AQ284076 T7,
AQ284074 SP6
AL357935 
9q31.1b RP11-202A15 chr9 104Mb AQ413702 T7+,
AQ413699 SP6
AL137021 
9q31.1d RP11-217O12 chr9 106Mb CL423211 SP6,
CL423212 T7
AL512646 
9q31.2a RP11-131A5 chr9 109Mb   AL137852 
9q31.2b RP11-143P10 chr9 110Mb AQ387266 SP6,
AQ387269 T7
AL137019 
9q31.3a RP11-104M22 chr9 112Mb AQ312968 T7,
AQ312967 SP6
AL157881 
9q31.3b RP11-4O1 chr9 113Mb   AL138756 SHGC-2544
9q32c RP11-56P10 chr9 115Mb AQ115341,
CL423245 T7,
CL423243 SP6,
AQ082560
AL137850 
9q33.1a RP11-67K19 chr9 118Mb AQ238563 T7,
AQ201567
AL133284 
9q33.1c RP11-57K1 chr9 121Mb AQ082644,
AQ115515
AL445683 
9q33.2a RP11-165P4 chr9 122Mb AQ418356 SP6,
AQ418377 T7
AL137068 
9q33.3a RP11-474P12 chr9 126Mb AQ635276 T7 AL451125 
9q33.3b RP11-1M19 chr9 128Mb B49616 T7,
AQ312770 SP6
AL356862 
9q34.11b RP11-339B21 chr9 130Mb   AL359091 
9q34.12a RP11-57C19 chr9 132Mb AQ115418 AL359092 
9q34.12a~34.13a RP11-168A7 chr9 134Mb AQ421808 T7,
AQ421807 SP6
AL161726 
9q34.2a RP11-92B21 chr9 136Mb AQ321559 T7,
AQ321558 SP6
AL158031 
9q34.3b RP11-120E1 chr9 138Mb AQ349066 SP6,
AQ349067 T7
AL591038 
9q34.3f RP11-424E7 chr9 140Mb   AL591424 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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