CGAP       the Cancer Genome Anatomy Project
Skip Main Navigation
    CGAP HOW TO GenesChromosomesTissuesSAGERNAiPathwaysTools  

Chromosomes

Tools

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


CCAP BAC Clones

1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y 

Chromosome 7

Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
7p22.2c~22.3a CTC-329F6 chr7 2Mb CL423016 SP6,
CL423015 T7 		  sWSS3341
7p22.2b~22.2c GS1-191O15 chr7 2Mb CL422989 T7,
CG734322 SP6,
BZ749222 SP6 		  sWSS2500
7p22.2a CTC-222D5 chr7 2Mb BZ748952 T7,
CG734323 SP6* 		  
7p22.2a CTC-222D5 chr7 4Mb CG734323 SP6,
BZ748952 T7* 		  
7p22.1c CTB-146A2 chr7 4Mb CL422996 T7,
CG734324 SP6,
BZ748977 SP6 		  sWSS2920+
7p22.1b GS1-42C19 chr7 5Mb BZ749246 SP6,
CG734325 T7,
CG734326 SP6,
BZ749247 T7 		  sWSS3152
7p21.3e GS1-54J22 chr7 7Mb BZ749255 T7+,
CG734328 SP6,
CG734327 T7,
BZ749254 SP6 		  sWSS1723
7p21.3c~21.3d GS1-183H7 chr7 8Mb BZ749220 SP6,
BZ749221 T7 		  sWSS3806
7p21.3b~21.3c GS1-124N22 chr7 9Mb BZ749214 SP6,
BZ749215 T7 		  sWSS2820
7p21.2a GS1-103O8 chr7 13Mb BZ749207 SP6,
BZ749208 T7 		  sWSS874
7p21.1c~21.2a GS1-110E22 chr7 15Mb BZ749209 SP6,
BZ749210 T7 		  sWSS1193
7p21.1c GS1-165K6 chr7 17Mb CG734330 SP6,
BZ749216 SP6,
CG734329 T7 		  sWSS1861
7p21.1b~21.1c CTB-168O22 chr7 18Mb CG734332 SP6,
CG734331 T7,
BZ748985 T7 		  sWSS2365
7p21.1b CTB-1D14 chr7 20Mb BZ748988 SP6+,
BZ748989 T7+ 		  sWSS1365
7p15.3e GS1-85H11 chr7 22Mb CG734333 T7,
BZ749265 SP6,
CG734334 SP6,
BZ749266 T7 		  
7p15.3c CTB-148D3 chr7 24Mb BZ748979 T7,
BZ748978 SP6 		  sWSS3415
7p15.2c GS1-213H12 chr7 26Mb BZ749236 SP6,
BZ749237 T7 		  sWSS2433
7p15.2a CTB-23D20 chr7 27Mb BZ748995 T7,
BZ748994 SP6 		  sWSS447
7p15.1b~15.1c CTB-111H21 chr7 29Mb BZ748971 SP6,
BZ748972 T7* 		  sWSS74+
7p15.1b~15.1c CTB-111H21 chr7 31Mb BZ748972 T7,
BZ748971 SP6* 		  sWSS74+
7p14.3b~14.3c GS1-124K10 chr7 31Mb BZ749213 T7,
BZ749212 SP6 		  sWSS3475
7p14.3b GS1-174H8 chr7 33Mb CG734336 SP6,
CG734335 T7 		  sWSS1405
7p14.3a~14.3b GS1-24B21 chr7 34Mb BZ749238 SP6,
BZ749239 T7 		  sWSS3814
7p14.1d~14.1e GS1-100A6 chr7 37Mb CL423000 T7,
CL423002 SP6 		  sWSS1473
7p14.1b~14.1c GS1-85G10 chr7 40Mb BZ749263 SP6,
BZ749264 T7 		  sWSS3745
7p14.1b CTC-520A9 chr7 40Mb CG734337 T7,
BZ748965 SP6 		  sWSS1963
7p14.1a CTC-232O9 chr7 43Mb BZ748956 T7,
BZ748955 SP6 		  sWSS1227
7p13d~13e GS1-8A1 chr7 44Mb CG734339 SP6,
BZ749267 SP6,
CG734338 T7 		  sWSS2842
7p13b~13c GS1-220D8 chr7 46Mb CG734341 SP6,
CG734340 T7 		  sWSS551
7p12.3b GS1-207I13 chr7 47Mb BZ749231 SP6,
BZ749232 T7 		  sWSS2507
7p12.2a GS1-202O8 chr7 49Mb BZ749228 SP6,
BZ749229 T7 		  sWSS339
7p12.1c~12.2a GS1-32L15 chr7 52Mb CG734342 SP6,
CL423006 T7 		  sWSS2803
7p12.1b GS1-6E1 chr7 53Mb BZ749256 SP6,
BZ749257 T7 		  sWSS2613
7p11.2c GS1-75C20 chr7 56Mb CG734343 SP6,
BZ749260 T7 		  sWSS2042
7q11.21d CTC-247K5 chr7 65Mb CG734344 SP6,
CL423012 T7 		  sWSS1792
7q11.21e CTB-88A9 chr7 66Mb CG734345 SP6,
BZ748999 SP6,
BZ749000 T7 		  sWSS3261+
7q11.22a GS1-208J7 chr7 66Mb CL422987 T7,
CG734346 SP6 		  sWSS1395
7q11.22a~11.22b CTC-325E15 chr7 67Mb CL422993 T7,
CG734347 SP6 		  AFMB298XG9
7q11.22b GS1-35C5 chr7 69Mb CL422998 T7,
CG734348 SP6,
BZ749244 SP6 		  sWSS2072
7q11.22b~11.22c GS1-240H2 chr7 71Mb CG734350 SP6,
CG734349 T7 		  sWSS1212
7q11.23c CTB-51J22 chr7 73Mb CG734352 SP6,
BZ748996 SP6,
CG734351 T7 		AC005056 sWSS1629
7q11.23f~11.23g CTC-332K22 chr7 75Mb CL422990 SP6+,
BZ748962 T7 		  
7q21.11a GS1-17A10 chr7 77Mb CG734354 SP6,
CG734353 T7 		  sWSS2022
7q21.11b GS1-27F18 chr7 79Mb BZ749242 SP6,
BZ749243 T7 		  sWSS2329
7q21.11c GS1-53N21 chr7 81Mb BZ749252 SP6,
BZ749253 T7 		  sWSS3005
7q21.11d GS1-35M23 chr7 83Mb BZ749245 T7,
CG734355 T7,
CG734356 SP6 		  sWSS2192
7q21.11f~21.11g GS1-207P11 chr7 86Mb BZ749234 SP6,
BZ749235 T7 		  sWSS1573
7q21.12b CTB-102E19 chr7 87Mb CG734357 SP6,
BZ748968 SP6,
CL422995 T7 		  sWSS2765
7q21.13b CTB-141D22 chr7 90Mb BZ748975 SP6,
BZ748976 T7 		  sWSS1968
7q21.2b CTB-104I4 chr7 92Mb   AC000119 
7q21.2b CTB-79L9 chr7 92Mb    sWSS2533
7q21.3a CTB-192P6 chr7 93Mb CG734358 SP6+,
CL423005 T7 		  -,
GDB:1318591
7q21.3b~21.3c CTC-224F8 chr7 96Mb CL423011 T7,
CL423014 SP6,
BZ748953 SP6 		  sWSS481
7q21.3d CTC-322M7 chr7 97Mb CL422988 SP6,
BZ748959 SP6,
CL422986 T7 		  sWSS2021
7q22.1f GS1-87A9 chr7 100Mb CL422992 T7,
CL422994 SP6 		  sWSS1017
7q22.1g~22.1h CTB-140E3 chr7 100Mb BZ748974 T7,
BZ748973 SP6 		  sWSS1183
7q22.1h~22.2a CTC-305I2 chr7 101Mb BZ749269 SP6,
BZ748958 T7 		  sWSS3445
7q22.3a CTB-66D11 chr7 104Mb BZ748997 SP6+,
BZ748998 T7+ 		AC002430 sWSS3516
7q22.3c CTB-20D2 chr7 106Mb BZ748991 T7,
CG734359 SP6,
BZ748990 SP6 		AC002381 sWSS1826
7q31.1b CTB-22K14 chr7 108Mb CG734360 SP6,
BZ748993 T7,
BZ748992 SP6 		AC004014 sWSS553+
7q31.1c CTC-277H20 chr7 111Mb CG734361 T7,
BZ748957 T7,
CG734362 SP6 		  sWSS1890
7q31.2b CTC-264L4 chr7 114Mb CG734363 SP6,
CL422997 T7 		  sWSS2651
7q31.2c~31.31a CTB-185C18 chr12 72Mb BZ748987 T7,
BZ748986 SP6 		  sWSS1391*
7q31.2c~31.31a CTB-185C18 chr7 116Mb BZ748986 SP6*,
BZ748987 T7* 		  sWSS1391
7q31.31c~31.31d GS1-74E4 chr7 119Mb BZ749259 T7,
BZ749258 SP6 		  sWSS1689
7q31.31d GS1-193F11 chr7 120Mb BZ749223 SP6,
CG734365 SP6,
CG734364 T7 		  sWSS912
7q31.32a GS1-80F7 chr7 122Mb BZ749261 SP6,
BZ749262 T7 		  
7q31.33a~31.33b CTC-361L6 chr7 124Mb BZ748963 SP6,
BZ748964 T7 		  sWSS1705
7q31.33b~31.33 CTB-97E14 chr7 125Mb CG734366 SP6,
BZ749001 T7 		  sWSS2772+
7q31.33c~32.1a CTB-162H9 chr7 127Mb CG734367 SP6,
CL423003 T7 		  sWSS3221
7q32.1 GS1-259E18 chr7 128Mb BZ749241 T7,
BZ749240 SP6 		  sWSS428
7q32.1~32.2 GS1-18N22 chr7 130Mb CL423008 T7,
CL423009 SP6 		  sWSS2652
7q32.3d GS1-199H20 chr7 131Mb BZ749227 T7,
BZ749226 SP6 		  sWSS3388
7q33b GS1-9J21 chr7 133Mb CL422999 T7,
CL423001 SP6,
BZ749268 SP6 		  sWSS193
7q33d GS1-180P12 chr7 136Mb BZ749218 T7+,
BZ749217 SP6 		  sWSS1840
7q34a CTB-162P22 chr7 137Mb BZ748983 SP6,
BZ748984 T7 		  sWSS3026
7q34c GS1-119B11 chr7 139Mb CG734375 T7,
CG734374 SP6 		  sWSS3971
7q34e CTC-574G24 chr7 141Mb BZ748966 SP6,
BZ748967 T7 		  sWSS3816
7q35a CTC-219J18 chr7 143Mb CL423007 SP6,
CL423004 T7 		  sWSS701
7q35b~35c GS1-53I5 chr7 144Mb BZ749251 T7,
BZ749250 SP6 		  sWSS3289
7q36.1a GS1-206P22 chr7 147Mb CL423013 SP6,
BZ749230 T7,
CL423010 T7 		  sWSS3809
7q36.1c CTB-156O8 chr7 150Mb BZ748980 SP6,
BZ748981 T7 		  sWSS3838+
7q36.1d GS1-203O3 chr7 151Mb CL422985 T7,
CG734368 SP6 		  sWSS3280
7q36.2b GS1-207L18 chr7 153Mb CL422991 T7,
CG734369 SP6,
BZ749233 SP6 		  sWSS2570
7q36.3a~36.3b GS1-121J16 chr7 155Mb CG734371 SP6,
CG734370 T7,
BZ749211 T7 		  sWSS1238
7q36.3d GS1-53F14 chr7 158Mb BZ749248 SP6,
BZ749249 T7 		  sWSS1243

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.