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CCAP BAC Clones

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Chromosome 17


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
17p13.3g RP11-294J5 chr17 1Mb CL423322 SP6,
CL423327 T7
  RH47135
17p13.3d RP11-357O7 chr17 1Mb AZ254624 T7,
AZ254625 SP6
  RH54972
17p13.3a RP11-380H7 chr17 2Mb AZ301131 T7,
AQ551627 T7,
AZ254638 SP6
AC021705 RH47913
17p13.2b~13.2c RP11-545O6 chr17 3Mb AZ254609 T7,
AZ254610 SP6
  RH16861
17p13.2b RP11-459C13 chr17 3Mb AZ301156 SP6,
AQ585429 T7,
AZ301155 T7
AC067815 RH55224
17p13.2a RP11-457I18 chr17 5Mb AZ254627 SP6,
AZ254626 T7
  RH39319
17p13.1a RP11-383G9 chr17 8Mb AZ301120 SP6,
AZ301119 T7
  RH12513
17p12c RP11-385G5 chr17 11Mb AZ301130 SP6,
AZ301129 T7
  RH48639
17p12a RP11-459E6 chr17 15Mb AZ301158 SP6,
AZ301157 T7
  RH76173
17p11.2i RP11-404D6 chr17 16Mb AZ301145 T7,
AZ301146 SP6
  RH9987
17p11.2g~11.2h RP11-525O11 chr17 17Mb AZ301335 T7,
AZ301336 SP6
  RH17427+
17p11.2c RP11-363P3 chr17 20Mb AZ301137 SP6,
AZ301136 T7
  RH65707
17p11.2a RP11-405P10 chr17 20Mb AZ301147 T7,
AZ301148 SP6
  RH39433
17q11.2c RP11-525H19 chr17 26Mb AZ254602 SP6,
AZ254601 T7
  RH55050
17q11.2d RP11-398A1 chr17 26Mb AZ254639 SP6,
AZ301142 T7
  RH28512
17q11.2e RP11-451O17 chr17 27Mb AZ301154 SP6,
CL423353 SP6
  RH47827
17q12b RP11-294G4 chr17 30Mb AZ301338 SP6,
AQ508306 T7,
AZ301337 T7
  RH55169
17q21.2a~21.2b RP11-513C18 chr17 35Mb AZ301169 SP6,
AZ301168 T7
  RH54983
17q21.31c RP11-436J4 chr17 39Mb AZ301153 SP6,
AZ301152 T7
  RH76314
17q21.32a RP11-510P20 chr17 42Mb AZ301167 SP6,
AZ301166 T7
  RH70724
17q21.32c RP11-423H11 chr17 43Mb AQ549495 SP6+,
AQ549498 T7+,
AZ254636 T7,
AZ254637 SP6
  RH17497
17q21.33c RP11-379D19 chr17 46Mb AZ301124 SP6,
AQ531881 SP6,
AQ531884 T7,
AZ301123 T7
  RH24999
17q21.33c RP11-379D19 chrY 57Mb AQ531884 T7,
AZ301123 T7,
AZ301124 SP6*,
AQ531881 SP6*
  RH24999*
17q22d RP11-481M4 chr17 54Mb AZ254622 SP6,
AQ628678 SP6,
AZ301163 T7
  RH55198
17q22d~23.1a RP11-142B17 chr17 54Mb AQ385987 SP6,
AQ385990 T7
AC021455 R37145
17q23.2c RP11-561K8 chr17 57Mb AZ254615 T7,
AZ254616 SP6
  RH10683+
17q24.1a RP11-489G5 chr17 60Mb AQ633219 T7+,
AZ254631 SP6,
AZ254630 T7
  RH18264
17q24.2b RP11-304I14 chr17 63Mb   AC023123,
AC087389
RH12010
17q24.2c RP11-387O17 chr17 63Mb AZ301140 T7,
AZ301141 SP6
  RH16794
17q24.3a RP11-293K20 chr17 64Mb AZ403256 SP6,
AZ301118 T7
AC005495 RH39341
17q24.3b RP11-300G13 chr17 65Mb AZ301125 T7,
AZ301126 SP6
  RH46249
17q24.3c RP11-387C17 chr17 68Mb AZ301138 T7,
AZ301139 SP6
AC021467+ RH69804
17q25.1a RP11-319A23 chr17 68Mb AZ254632 T7,
CL423225 T7,
CL423220 SP6
  RH26980
17q25.1b~25.1c RP11-399J11 chr17 70Mb AZ301143 T7,
AZ301144 SP6
AC068874 RH10760
17q25.1d RP11-526M7 chr17 72Mb AZ254604 SP6,
AZ254603 T7
  RH68144
17q25.3a RP11-537M14 chr17 74Mb AZ254607 T7,
AZ254608 SP6
  RH45138
17q25.3c~25.3d RP11-467J3 chr17 74Mb AZ254628 T7,
AZ254629 SP6
  RH45324+,
RH47506+

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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