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CCAP BAC Clones

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Chromosome 13


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
13q12.12a RP11-520L19 chr13 23Mb CL423260 SP6,
CL423264 T7
AL157368 
13q12.13c RP11-144H23 chr13 26Mb CL423297 T7,
AQ389551 T7,
CL423291 SP6
AL158062 SHGC-6462
13q12.3c RP11-121O19 chr13 29Mb AQ343487 SP6,
AQ343491 T7
AL138681 SHGC-11972,
SHGC-2180
13q12.3d~13.1a RP11-367C11 chr13 30Mb AQ547931 T7,
CL423329 T7,
CL423324 SP6
AL138965 
13q13.2a RP11-87G1 chr13 32Mb AQ284066 T7 AL139383 
13q13.3a RP11-98D3 chr13 34Mb AQ320551 T7+,
AQ320547 SP6
AL390071 
13q13.3b RP11-560N15 chr13 35Mb   AL390029 
13q13.3c RP11-14O22 chr13 36Mb B76332 T7 AL136220 
13q13.3e RP11-429E17 chr13 38Mb AQ550295 SP6,
AQ550297 T7
AL158194 
13q14.11a RP11-89L15 chr13 39Mb AQ284837 SP6,
AQ284840 T7
AL133318 D13S1162
13q14.11d RP11-21H9 chr13 41Mb B83994 T7,
B83993 SP6
AC023297 SHGC-4151
13q14.11e RP11-484D5 chr13 43Mb AQ630687 SP6,
AQ630689 T7
AL356107 
13q14.12b~14.13b RP11-417C20 chr13 46Mb AQ553703 T7 AL138704 
13q14.2a RP11-278A16 chr13 48Mb AQ506199 T7,
AQ506198 SP6
AL139182 
13q14.3c RP11-48H1 chr13 49Mb AQ199561,
CL423295 SP6,
CL423296 T7,
AQ199580
AL158195 
13q21.1c RP11-100C24 chr13 56Mb AQ322007 SP6,
AQ322009 T7
AL353657 
13q21.1d RP11-14O16 chr13 56Mb B82359 SP6,
B87995 T7,
B76327 T7
AC018395 
13q21.2a RP11-16M6 chr13 58Mb B75508 SP6,
B75509 T7
AC024276 
13q21.2b RP11-430I3 chr13 59Mb AZ916637 T7,
AQ552415 T7,
AQ552413 SP6,
AZ916638 SP6
AL356502 RH44715
13q21.31b~21.31c RP11-282D7 chr13 62Mb AZ519615 SP6,
AQ505208 T7
AL355609 
13q21.32b RP11-326B4 chr13 66Mb CL423271 T7,
CL423266 SP6,
AQ544235 SP6
AL139325 
13q21.33a~21.33b RP11-23B16 chr13 67Mb AQ013276,
CL423303 T7,
CL423298 SP6,
AQ013279
AL161894 
13q21.33c~21.33d RP11-394C23 chr13 69Mb   AL162378 
13q22.1a RP11-165L1 chr13 72Mb AQ415440 SP6,
AQ382553 T7
AL139181 SHGC-665,
SHGC-8155
13q22.1b RP11-285E18 chr13 73Mb CL423194 SP6,
CL423199 T7
AL157814 
13q22.2a~22.2b RP11-29G8 chr13 75Mb B85013 SP6,
B85014 T7
AL137782 
13q31.1a RP11-454P4 chr13 80Mb AQ586037 SP6,
AQ586040 T7
AL157696 
13q31.1b RP11-142F6 chr13 81Mb AQ387338 T7 AL353628 
13q31.1c RP11-120L14 chr13 83Mb AQ341738 SP6,
AQ341740 T7
AL162493 SHGC-20831
13q31.1d RP11-29C8 chr13 85Mb B84980 SP6,
B84981 T7
AL161428 
13q31.2a RP11-315A9 chr13 87Mb CL423336 T7,
CL423331 SP6
AL162498 
13q31.3a RP11-75E6 chr13 89Mb AQ267195 T7,
AQ267191 SP6
AL139185 
13q31.3b RP11-165N12 chr13 91Mb AQ418312 SP6,
AQ418313 T7
AL159152 SHGC-37261
13q31.3c RP11-632L2 chr13 92Mb AQ493472 SP6,
AQ441472 T7
AL354811 
13q32.1c RP11-195A5 chr13 96Mb AQ422258 SP6,
AQ422262 T7
AL160393 
13q32.2b~32.3a RP11-318G11 chr13 98Mb AQ535735 SP6+,
AQ535737 T7
AL139084 
13q32.3c RP11-151A6 chr13 99Mb AQ377444 SP6+,
AQ377445 T7
AL136526 
13q33.1c RP11-46I10 chr13 101Mb AQ201102,
CL423228 SP6,
CL423229 T7,
AQ201104
AL159155 
13q33.2a~33.2b RP11-713K6 chr13 105Mb AQ437662 SP6,
CL423259 SP6,
CL423263 T7
AC021993 
13q33.3b RP11-94F16 chr13 107Mb AQ323593 SP6,
AQ323595 T7
AL139189 
13q34b RP11-90L1 chr13 109Mb AQ284465 SP6,
AZ518557 T7,
AQ284477 T7
AL139385 
13q34c RP11-480K16 chr13 112Mb   AL160033 
13q34d RP11-98F14 chr13 112Mb AQ319420 T7,
AQ319417 SP6
AL137002 H28922

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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