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U.S. Genome Variation Estimates

TaqMan Assays

Gene symbol:

ABCB1

Variant:

rs1045642 

Forward primer:

CTGTTTGACTGCAGCATTGCT

Reverse primer:

ATGTATGTTGGCCTCCTTTGCT

FAM-probe:

CCCTCACAATCTCTT

VIC-probe:

CCCTCACGATCTCTT

Gene symbol:

ADH1B

Variant:

rs1229984

Forward primer:

CTCTTTATTCTGTAGATGGTGGCTGTAG

Reverse primer:

CTCATGGCCTAAAATCACAGGAA

FAM-probe:

TGGTCATCTGTGCGACA

VIC-probe:

CTGTGTGACAGATTC

Gene symbol:

ADH1B

Variant:

rs17033

Forward primer:

CCTTCCCCTGTAGCAGTCTTCA

Reverse primer:

TGAATTAATGATATTTCCTAGCTGTTGCT

FAM-probe:

CCTACGAGATCTGG

VIC-probe:

ACCCTACAAGATCTG

Gene symbol:

IL4R

Variant:

rs1805015

Forward primer:

AGGCAACCCTGCTTACCG

Reverse primer:

TCTCTGGGACACGGTGACT

FAM-probe:

TTCAGCAACTCCCTG

VIC-probe:

CTTCAGCAACCCCCTG

Gene symbol:

ADH1B

Variant:

rs2066702

Forward primer:

GTGGGTTGTCTAAATGTTAACACAATGT

Reverse primer:

GGAGGCTGAAGACTGCTACAG

FAM-probe:

ACGGTACAGATACTG

VIC-probe:

ACGGTACGGATACTG

Gene symbol:

ITGA2

Variant:

rs1126643

Forward primer:

CATCCCAGACATCCCAATATGGT

Reverse primer:

GGCCTATTAGCACCAAAACTTACCT

FAM-probe:

TTGCTCCAAATGTG

VIC-probe:

AATTGCTCCGAATGTG

Gene symbol:

ADH1C

Variant:

rs1693482

Forward primer:

TGACTGATGGAGGTGTGGATTTT

Reverse primer:

GCAGAAATTTCAGGGCATGTC

FAM-probe:

ATCGGTCGGCTTGA

VIC-probe:

CATCGGTCAGCTTG

Gene symbol:

MBL2

Variant:

rs11003125

Forward primer:

CCAACGTAGTAAGAAATTTCCAGAGA

Reverse primer:

CAACCCAGCCCAGAATTAACTG

FAM-probe:

AGCCTGTGTAAAAC

VIC-probe:

CCTGTCTAAAACACC

Gene symbol:

ADH1C

Variant:

rs698

Forward primer:

GCTAAGAAGTTTTCACTGGATGCAT

Reverse primer:

AGCGAAGCAGGTCAAATCCTT

FAM-probe:

TTCAAAAGGTAAAACATTT

VIC-probe:

TTCAAAAGGTAAAATATTT

Gene symbol:

MBL2

Variant:

rs1800450

Forward primer:

GGCTTCCCAGGCAAAGATG

Reverse primer:

AGCCCAACACGTACCTGGTT

FAM-probe:

CCTTGGTGCCATCA

VIC-probe:

CCTTGGTGTCATCAC

Gene symbol:

ADRB2

Variant:

rs1042713

Forward primer:

CGGCAGCGCCTTCTTG

Reverse primer:

TGCGTGACGTCGTGGTC

FAM-probe:

ACCCAATGGAAGCC

VIC-probe:

CACCCAATAGAAGCC

Gene symbol:

MBL2

Variant:

rs1800451

Forward primer:

GGCTTCCCAGGCAAAGATG

Reverse primer:

AGCCCAACACGTACCTGGTT

FAM-probe:

ACCAAGGGAGAAAA

VIC-probe:

CAAGGAAGAAAAGG

Gene symbol:

ADRB3

Variant:

rs4994

Forward primer:

GCAACCTGCTGGTCATCGT

Reverse primer:

ACGAACACGTTGGTCATGGT

FAM-probe:

TCGGAGTCCAGGCGA

VIC-probe:

TCGGAGTCCGGGCGA

Gene symbol:

MBL2

Variant:

rs5030737

Forward primer:

CCTGTAGCTCTCCAGGCATCA

Reverse primer:

AGCCCAACACGTACCTGGTT

FAM-probe:

CATCACACCCATCTT

VIC-probe:

ATCACGCCCATCTT

Gene symbol:

ALAD

Variant:

rs1800435

Forward primer:

ACCCACACCCACACAGGTA

Reverse primer:

CAAGGGCCTCAGCATCTCTT

FAM-probe:

CCAGCCGCTTCACA

VIC-probe:

CCAGCCGGTTCACA

Gene symbol:

MBL2

Variant:

rs7096206

Forward primer:

GCACGGTCCCATTTGTTCTCA

Reverse primer:

GCGTTGCTGCTGGAAGACTATAAA

FAM-probe:

CATGCTTTCCGTGGCAG

VIC-probe:

CATGCTTTCGGTGGCAG

Gene symbol:

B9D2

Variant:

rs1800468

Forward primer:

CGTGGAGTGCTGAGGGACTCT

Reverse primer:

GCCATCCTCCCCCATCAC

FAM-probe:

CCAACGTCACCACCA

VIC-probe:

CTCCAACATCACCACC

Gene symbol:

MGC4093

Variant:

rs1800468

Forward primer:

CGTGGAGTGCTGAGGGACTCT

Reverse primer:

GCCATCCTCCCCCATCAC

FAM-probe:

CCAACGTCACCACCA

VIC-probe:

CTCCAACATCACCACC

Gene symbol:

B9D2

Variant:

rs1800469

Forward primer:

AAGGAGAGCAATTCTTACAGGTGTCT

Reverse primer:

GCCTCCGGAGGGTGTCA

FAM-probe:

CATCCTTCAGGTGTC

VIC-probe:

CCATCCCTCAGGTGT

Gene symbol:

MGC4093

Variant:

rs1800469

Forward primer:

AAGGAGAGCAATTCTTACAGGTGTCT

Reverse primer:

GCCTCCGGAGGGTGTCA

FAM-probe:

CATCCTTCAGGTGTC

VIC-probe:

CCATCCCTCAGGTGT

Gene symbol:

CAPN10

Variant:

rs3792267

Forward primer:

GTGTGTGGGCAGAGGACTG

Reverse primer:

CCTCACCAAGTCAAGGCTTAGC

FAM-probe:

CCTTCAAACGCCTTAC

VIC-probe:

CACCTTCAAATGCCTTAC

Gene symbol:

MTHFR

Variant:

rs1801131

Forward primer:

GGAGGAGCTGCTGAAGATGTG

Reverse primer:

CCCGAGAGGTAAAGAACAAAGACTT

FAM-probe:

AGACACTTGCTTCACT

VIC-probe:

CAAAGACACTTTCTTC

Gene symbol:

CAT

Variant:

rs769214

Forward primer:

TTTACTCTTCAACATAGCTTTTT AAA
GACACAAAG

Reverse primer:

CTGCCAAATTGGCTTCTTTAAACACT

FAM-probe:

CCCCAAATTTTACCCCCAG

VIC-probe:

TCCCCAAATTTTACTCCCAG

Gene symbol:

MTRR

Variant:

rs1801394

Forward primer:

CATGCCTTGAAGTGATGAGG

Reverse primer:

GATCTGCAGAAAATCCATGTACCA

FAM-probe:

CTTGCTCACACATTT

VIC-probe:

TGCTCACATATTTC

Gene symbol:

CCL5

Variant:

rs2280788

Forward primer:

GCTATTTTGGAAACTCCCCTTAGG

Reverse primer:

CTCAGGCTGGCCCTTTATAGG

FAM-probe:

ATGCCCCTGAACTG

VIC-probe:

ATGCCCCTCAACTG

Gene symbol:

NAT2

Variant:

rs1041983

Forward primer:

CAGACCACAATGTTAGGAGGGTATT

Reverse primer:

CCATGCCAGTGCTGTATTTGTTA

FAM-probe:

CTGGAGGGATATAAA

VIC-probe:

ACTGGAGGGATGTAAA

Gene symbol:

CCR2

Variant:

rs1799864

Forward primer:

CGGTGCTCCCTGTCATAAATTTGA

Reverse primer:

GTCAGTCAAGCACTTCAGCTTTT

FAM-probe:

ACATGCTGGTCGTCCT

VIC-probe:

ACATGCTGGTCATCCT

Gene symbol:

NAT2

Variant:

rs1208

Forward primer:

CTCTCACTGAGGAAGAGGTTGAAGA

Reverse primer:

ACGAGATTTCTCCCCAAGGAA

FAM-probe:

AGTGCTGAGAAATA

VIC-probe:

AGTGCTGAAAAAT

Gene symbol:

CYP1A1

Variant:

rs2472299

Forward primer:

CACATGTTGAGCTGAGGAGTTCA

Reverse primer:

TGAGCATGTCAGATCTCTAATCAAAATCC

FAM-probe:

AGGCATTCAGAACAA

VIC-probe:

AGGCATTCAGAATAA

Gene symbol:

NAT2

Variant:

rs1799930

Forward primer:

CTGCCAAAGAAGAAACACCAAAA

Reverse primer:

TGGAGACGTCTGCAGGTATGTATT

FAM-probe:

ACCTCGAACAATTG

VIC-probe:

TGAACCTCAAACAATT

Gene symbol:

CYP1A1

Variant:

rs2606345

Forward primer:

TGACCATCTTCTTTGTCCTTTGC

Reverse primer:

TTCCAGCTCCCTGCAGTTG

FAM-probe:

ATCAGGTTGACAGATT

VIC-probe:

TCAGGGTGACAGATT

Gene symbol:

NAT2

Variant:

rs1801279

Forward primer:

GGAGTTGGGCTTAGAGGCTATTTT

Reverse primer:

CAGAAGTTGATTGACCTGGAGACA

FAM-probe:

CCACCCCGGTTTC

VIC-probe:

CCCACCCTGGTTTC

Gene symbol:

CYP1A2

Variant:

rs11854147

Forward primer:

GGTCACAGGGTCTAAGCTACCT

Reverse primer:

GCCATTGTTTCTTCCAGGACTTG

FAM-probe:

CAAGGGATCCCTGCAC

VIC-probe:

CAAGGGACCCCTGCAC

Gene symbol:

NAT2

Variant:

rs1801280

Forward primer:

CACTGGCATGGTTCACCTTCT

Reverse primer:

ACATCTGGGAGGAGCTTCCA

FAM-probe:

TGACCATTGACGGCAG

VIC-probe:

TGACCACTGACGGCA

Gene symbol:

CYP1A2

Variant:

rs2069514

Forward primer:

AGCTATACATGACATATGCACTTTTCCA

Reverse primer:

CGTGATGGTGCACACCTGTAATT

FAM-probe:

CGCCTCTCGGATTCA

VIC-probe:

CGCCTCTCAGATTCA

Gene symbol:

NOS3

Variant:

rs1799983

Forward primer:

GGCTGGACCCCAGGAAA

Reverse primer:

CACCCAGTCAATCCCTTTGGT

FAM-probe:

CCCAGATGATCCCCCA

VIC-probe:

CCAGATGAGCCCCCA

Gene symbol:

CYP1A2

Variant:

rs4886406

Forward primer:

TTCTTCAGGCACTACCCTCTCA

Reverse primer:

CCCAGCAGGAAACAGTTTAATTCGA

FAM-probe:

CCTAACCCCTTGTAATAA

VIC-probe:

CTAACCCCGTGTAATAA

Gene symbol:

NOS3

Variant:

rs2070744

Forward primer:

ACCAGGGCATCAAGCTCTTC

Reverse primer:

GCAGGTCAGCAGAGAGACTAG

FAM-probe:

CAGGGTCAGCCAGCCA

VIC-probe:

CAGGGTCAGCCGGCCA

Gene symbol:

CYP1B1

Variant:

rs1056836

Forward primer:

TGTCAACCAGTGGTCTGTGAATC

Reverse primer:

TCACTCTGCTGGTCAGGTCCTT

FAM-probe:

ACCCAGTGAAGTGG

VIC-probe:

ATGACCCACTGAAGTG

Gene symbol:

NQO1

Variant:

rs10517

Forward primer:

CCAAGGTCATGGGACTGGAC

Reverse primer:

CAGAAGGTTATTTTCTTTATCA TTGC
TAAACTGAT

FAM-probe:

CATCCCATGGTAAGTC

VIC-probe:

CCATCCCATAGTAAGTC

Gene symbol:

CYP1B1

Variant:

rs1056837

Forward primer:

GGCCTAACCCGGAGAACTTT

Reverse primer:

TCACTCTGCTGGTCAGGTCCTT

FAM-probe:

CAAGGATGGCCTCAT

VIC-probe:

AAGGACGGCCTCAT

Gene symbol:

NQO1

Variant:

rs1800566

Forward primer:

TGCATTTCTGTGGCTTCCAA

Reverse primer:

CTGGAGTGTGCCCAATGCTATA

FAM-probe:

TCAGTTGAGATTCTAAG

VIC-probe:

TGTCAGTTGAGGTTCT

Gene symbol:

CYP1B1

Variant:

rs162557

Forward primer:

TTGCTGGTTTCAATCTCTCAAGAAGT

Reverse primer:

TGACCCTGGAATGACTGATTACATTG

FAM-probe:

TCTGAAAAGAATCTG

VIC-probe:

TCTGAAGAGAATCTG

Gene symbol:

NQO1

Variant:

rs34755915

Forward primer:

TCTAGGACAATAAGCACGCAAATGT

Reverse primer:

CCGCAGACCTTGTGATATTCCA

FAM-probe:

CTGACACCCTTTCC

VIC-probe:

CCTGACACCCCTTCC

Gene symbol:

CYP2A6

Variant:

rs1801272

Forward primer:

AGGAGGCGGGCTTCCT

Reverse primer:

TCGTCCTGGGTGTTTTCCT

FAM-probe:

TCGACGCCCTCCGGGGC

VIC-probe:

TCGACGCCCACCGGGGC

Gene symbol:

NQO1

Variant:

rs689452

Forward primer:

TGCCTACAGAGACACACACAAAG

Reverse primer:

GAAGGTTTGCTGGTTGGTAATGG

FAM-probe:

CACACAGGGAAAAC

VIC-probe:

CACACACGGAAAAC

Gene symbol:

CYP2C19

Variant:

rs4986894

Forward primer:

AAGGAGCATATAGTGGGCCTAGGT

Reverse primer:

ATGCTAATTAAGTGTGTGTGCCTCTT

FAM-probe:

TGATGGATAAAGTGGC

VIC-probe:

ATGGATGAAGTGGCCA

Gene symbol:

NQO1

Variant:

rs689453

Forward primer:

CACCTCCCATCCTTTCTTCTTCAAA

Reverse primer:

ATCGTACTGGCTCACTCAGAGA

FAM-probe:

ATGAAGGAAGCTGCTG

VIC-probe:

ATGAAGGAGGCTGCTG

Gene symbol:

CYP2C9

Variant:

rs1057910

Forward primer:

GCCACATGCCCTACACAGATG

Reverse primer:

GAATTTAATGTCACAGGTCACTGCAT

FAM-probe:

AAGGTCAAGGTATCTC

VIC-probe:

AGGTCAATGTATCTCT

Gene symbol:

OGG1

Variant:

rs1052133

Forward primer:

CCCTCCTACAGGTGCTGTTCAG

Reverse primer:

ACCCTTTCTGCGCTTTGCT

FAM-probe:

CCAATCCCGCCATG

VIC-probe:

CCAATGCCGCCATG

Gene symbol:

CYP3A4

Variant:

rs2740574

Forward primer:

TGGAATGAGGACAGCCATAGAGA

Reverse primer:

AGTGGAGCCATTGGCATAAAATCT

FAM-probe:

AAGGGCAGGAGAGAG

VIC-probe:

AAGGGCAAGAGAGAG

Gene symbol:

PON1

Variant:

rs662

Forward primer:

CACTTTTATGGCACAAATGATCACT

Reverse primer:

CCACGCTAAACCCAAATACATCTC

FAM-probe:

CCTACTTACGATCCTG

VIC-probe:

CCTACTTACAATCCTG

Gene symbol:

F5

Variant:

rs6025

Forward primer:

CATGTTCTAGCCAGAAGAAATTCTCAGA

Reverse primer:

CTGGGCTAATAGGACTACTTCTAATCTGT

FAM-probe:

CAGGCAAGGAATAC

VIC-probe:

AGGCGAGGAATAC

Gene symbol:

PON1

Variant:

rs854560

Forward primer:

GAAAACACTCACAGAGCTAATGAAAGC

Reverse primer:

ACAACCTGTACTTTCTGTTCTCTTTTCTG

FAM-probe:

CAGTATCTCCATGTCTTC

VIC-probe:

AGTATCTCCAAGTCTTC

Gene symbol:

FAM82A**

Variant:

rs163086

Forward primer:

TCGTGCCTTGGTTCTTCTCTCT

Reverse primer:

ATCAGAACCCTTCCGTCTCTCA

FAM-probe:

CAGTGTTCACGGGCT

VIC-probe:

CCAGTGCTCACGGG

Gene symbol:

PPARG

Variant:

rs1801282

Forward primer:

GTTATGGGTGAAACTCTGGGAGATT

Reverse primer:

GCAGACAGTGTATCAGTGAAGGAAT

FAM-probe:

CTATTGACGCAGAAAG

VIC-probe:

CTCCTATTGACCCAGAAAG

Gene symbol:

FCGR2A

Variant:

rs1801274

Forward primer:

CCAGAATGGAAAATCCCAGAAAT

Reverse primer:

TTTGCTTGTGGGATGGAGAAG

FAM-probe:

TCTCCCGTTTGGATC

VIC-probe:

CTCCCATTTGGATCC

Gene symbol:

TGFB1

Variant:

rs1982073

Forward primer:

CCCACCACACCAGCCCTGTTC

Reverse primer:

TTCCGCTTCACCAGCTCCATGT

FAM-probe:

TAGCAGCAGCAGCAGCAGCAGCCG

VIC-probe:

TAGCAGCAGCGGCAGCAGCC

Gene symbol:

FGB

Variant:

rs1800790

Forward primer:

GTTATTTTGATTAATGTCTAAAACAAAA
GATAAACACATTATGAT

Reverse primer:

GCAACCACTAAAATCGTGACTCATT

FAM-probe:

CTATTGATTTTAATGGCCCC

VIC-probe:

TTACTATTGATTTTAATAGCCCC

Gene symbol:

TLR4

Variant:

rs4986790

Forward primer:

CCATTGAAGAATTCCGATTAGCATA

Reverse primer:

CACTCACCAGGGAAAATGAAGAA

FAM-probe:

CTCGATGGTATTATTG

VIC-probe:

CCTCGATGATATTATT

Gene symbol:

IL10

Variant:

rs1800871

Forward primer:

GAGGAAACCAAATTCTCAGTTAGCA

Reverse primer:

TTATAGTGAGCAAACTGAGGCACAG

FAM-probe:

AGGTGATGTAATATCT

VIC-probe:

AGGTGATGTAACATCT

Gene symbol:

TNF

Variant:

rs1800629

Forward primer:

CCAAAAGAAATGGAGGCAATAGGTT

Reverse primer:

GGACCCTGGAGGCTGAAC

FAM-probe:

CCCGTCCCCATGCC

VIC-probe:

CCCGTCCTCATGCC

Gene symbol:

IL10

Variant:

rs1800872

Forward primer:

GGTAAAGGAGCCTGGAACACATC

Reverse primer:

GCCCTTCCATTTTACTTTCCAGAGA

FAM-probe:

TGGCTTCCTACAGGAC

VIC-probe:

CTGGCTTCCTACAGTAC

Gene symbol:

TNF

Variant:

rs1800750

Forward primer:

CCCCTCCCAGTTCTAGTTCTATCTT

Reverse primer:

CCTATTGCCTCCATTTCTTTTGG

FAM-probe:

TTTCCTTCTAACTTCC

VIC-probe:

TTCCTTCTAATTTCC

Gene symbol:

IL10

Variant:

rs1800896

Forward primer:

ACACACACAAATCCAAGACAACACT

Reverse primer:

GCTGGATAGGAGGTCCCTTACTTT

FAM-probe:

TCCCCCTCCCAAAG

VIC-probe:

TCCCCTTCCCAAAGA

Gene symbol:

TNF

Variant:

rs361525

Forward primer:

CAGTCAGTGGCCCAGAAGAC

Reverse primer:

AGCATCAAGGATACCCCTCACA

FAM-probe:

CCCTGCTCCGATTC

VIC-probe:

CTCCCTGCTCTGATTC

Gene symbol:

IL1B

Variant:

rs1143623

Forward primer:

AGGTATCGTGCTCGCTCTG

Reverse primer:

TCGTGTCTCAAATACTTGCACAGA

FAM-probe:

CTCCCTTGCATAATG

VIC-probe:

ACTCCCTTGGATAATG

Gene symbol:

VDR

Variant:

rs2239185

Forward primer:

GGGAAAGACGAAACAGCAACAC

Reverse primer:

CCCCTCCCTCACCTGTGT

FAM-probe:

CTGTCTTCACACCTGCA

VIC-probe:

CTGTCTTCACGCCTGCA

Gene symbol:

IL4

Variant:

rs2243248

Forward primer:

ACTGACTAGGAGGGCTGATTTGTAA

Reverse primer:

GGAACCTAAACACATCCTCAGCTAA

FAM-probe:

AGCTACCGTCTTACC

VIC-probe:

AGAGCTACAGTCTTAC

Gene symbol:

XRCC1

Variant:

rs1799782

Forward primer:

GAGGATGAGAGCGCCAACTC

Reverse primer:

CTCACTCAGGACCCACGTTGT

FAM-probe:

TTCAGCCGGATCAA

VIC-probe:

CTTCAGCTGGATCAA

Gene symbol:

IL4

Variant:

rs2243250

Forward primer:

GACCTGTCCTTCTCAAAACACCTAA

Reverse primer:

GGCAGAATAACAGGCAGACTCT

FAM-probe:

CATTGTTCCCCAGTGCT

VIC-probe:

CATTGTCCCCCAGTGCT

Gene symbol:

XRCC1

Variant:

rs25486

Forward primer:

TGTCTCTCTCTCTCTCTGTCTGTCT

Reverse primer:

GATGCCAGTTAGGTGTGATCTGA

FAM-probe:

CTGTCTCGTTCCCC

VIC-probe:

CTGTCTCATTCCCC

Gene symbol:

IL4

Variant:

rs2243270

Forward primer:

CAAAACAGTATCAACAGTTGACCCCTAT

Reverse primer:

CTCATCCCACCAGCCAGAG

FAM-probe:

AAATATTAACAGCAGTAGTTAC

VIC-probe:

AAAATATTAACAGCAATAGTTAC

Gene symbol:

XRCC1

Variant:

rs25487

Forward primer:

GTGGGTGCTGGACTGTCA

Reverse primer:

GCAGGGTTGGCGTGTGA

FAM-probe:

CCTCCCGGAGGTAA

VIC-probe:

CCCTCCCAGAGGTAA

Gene symbol:

IL4R

Variant:

rs1801275

Forward primer:

GCCGAAATGTCCTCCAGCAT

Reverse primer:

CCTGCTCCACCGCATGTA

FAM-probe:

CAGTGGCTATCGGGAGT

VIC-probe:

CAGTGGCTATCAGGAGT

Gene symbol:

XRCC1

Variant:

rs25489

Forward primer:

GTGGTGCTAACCTAATCTACTCTTTGTCT

Reverse primer:

TGGGCTCGGTGCCTTCT

FAM-probe:

AGCTCCAACTCGTACCCCAGCCA

VIC-probe:

CAGCTCCAACTCATACCCCAGCCA


B9D2 is a protein that lies partially within the TGFB1 promoter. Although within B9D2, these two SNPs are believed to be promoter polymorphisms of TGFB1.
** FAM82A is a hypothetical protein that lies immediately 5' of CYP1B1. This variant may be an intronic polymorphism of FAM82A or a CYP1B1 variant that lies 3’ of the gene.

Page last updated: October 22, 2008
Page last reviewed: October 22, 2008
Content Source: National Office of Public Health Genomics