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Infrastructure
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Ordering Information
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- Development and Application of
Subtractive Hybridization Strategies to
Facilitate Gene Discovery
Maria de Fatima Bonaldo, Greg Lennon and Marcelo Bento Soares
The University of Iowa, Iowa City, IA
- EURO-IMAGE: the European IMAGE
Consortium for Integrated Molecular
Analysis of Human Gene Transcripts
Auffray, C.1, Devignes, M.D.1, Pietu, G.1,
Ansorge, W.2, Schwager, C.2, Ballabio, A.3,
Borsani, G.3, Banfi, S.3, Estivill, X.4, Lynch,
M.4, Gibson, K.5, Mundy, C.5, Lehrach,
H.6, Poustka, A.7, Wiemann, S.7, Korn,
B.7, O'Brien, J.7, Uhlen, M.8, Lundeberg,
J.8
1 CNRS UPR 420, BP 8, 94801 Villejuif cedex,
France
2 EMBL, Postfach 10.2209, 6900 Heidelberg,
Germany
3 TIGEM, Via Olgettina 58, 20132 Milano, Italy
4 IRO, Hospital Duran I Reynals, Autovia de
Castelldefels 2,7, Barcelona, Spain
5 HGMP, Hinxton, CB10 1RQ, United Kingdom
6 MPI, Ihnerstrasse 73, Dahlem, 14195 Berlin,
Germany
7 DKFZ, Im Neuenheimer Feld 280, 69120
Heidelberg, Germany
8 KTH, Teknikringen 34, 10044 Stockholm,
Sweden
- The Functional Genomics Initiative at
Oak Ridge National Laboratory
Dabney Johnson, Monica Justice, Ken Beattie,
Michelle Buchanan, Michael Ramsey, Rose
Ramsey, Michael Paulus, Nance Ericson, David
Allison, Reid Kress, Richard Mural, Ed
Uberbacher, Reinhold Mann
Life Sciences, Instrumentation and Controls,
Chemical Technology, and Robotics and Process
Systems Divisions, Oak Ridge National
Laboratory, Oak Ridge TN 37831
- Defining the Function of the Human DNA
Repair Protein XPF by Comparative
Genomics and Protein Chemistry
Sandra L. McCutchen-Maloney, Mark Shannon,
Jane Lamerdin and Michael P. Thelen
Molecular and Structural Biology Division,
Lawrence Livermore National Laboratory, Livermore, CA 94550
- Direct Isolation of Functional Copies of the
Human HPRT Gene by TAR Cloning
Using One Specific Targeting Sequence
Natalay Kouprina*, Lois Annab**, Michael A.
Resnick*, J. Carl Barrett** and Vladimir
Larionov*
*Laboratory of Molecular Genetics and
**Laboratory of Molecular Carcinogenesis,
National Institute of Environmental Health
Sciences, Research Triangle Park NC 27709, USA
- Mobile Elements and DNA
Integration
Jerzy Jurka
Genetic Information Research Institute, Palo Alto, USA
- Study of Electric Field-Induced
Transformation of Escherichia coli
with Large DNA Using DH10B Cells
Alexander Boitsov1,2, Boris Oskin1, Pieter J. de
Jong2
1 Saint Petersburg State Technical University,
Department of Biophysics, St. Petersburg 195251,
Russia, 2 Roswell Park Cancer Institute,
Department of Human Genetics, Elm and Carlton St., Buffalo, NY 14263
- Progress Towards the Construction of
BAC Libraries from Flow Sorted
Human Chromosomes
Jonathan L. Longmire, Nancy C. Brown, Evelyn W. Campbell, Mary L. Campbell,
John J. Fawcett, Phil Jewett, Mary Maltbie, and Larry L. Deaven
Life Sciences Division and Center for Human
Genome Studies, Los Alamos National
Laboratory, Los Alamos, NM 87545.
- Construction of Human Chromosome 5 and 16
Specific Libraries by TAR
Cloning
N. Kouprina, M. Campbell, J. Graves, E. Campbell, L. Meincke, J. Tesmer, N.
Brown, J. Fawcett, P. Jewett, R. K. Moyzis, N. Doggett, L.
Deaven, and V. Larionov
Los Alamos National Laboratory, Life Sciences
Division and Center for Human Genome Studies,
National Institute of Environmental Health Services, Laboratory of Molecular Genetics,
Research Triangle Park, NC 27709
- Construction of Genome-Wide Physical BAC
Contigs Using Mapped
cDNA as Probes: Toward an Integrated Bac Library Resource for
Genome Sequencing and Analysis
Steve C. Mitchell, Diana Bocskai, Yicheng Cao2,
Robert Xuequn Xu, Mei Wang, Troy Moore3, So
Hee Dho4, Enrique Colayco2, Christie Gomez,
Gabriella Rodriguez, Annabel Echeverria, Melvin I. Simon2, and Ung-Jin
Kim2
2 Biology, California Institute of Technology
3 Research Genetics, Huntsville, AL
4 Seoul National University, Seoul, Korea
- Current Status of the Integrated
Chromosome 16 Map
N. A. Doggett, L. A. Goodwin, J. G. Tesmer, L. J.
Meincke, D. C. Bruce, M. R. Altherr, R. D.
Sutherland, U.-J. Kim, and L. L. Deaven
Los Alamos National Laboratory, Los Alamos,
New Mexico 87545 and California Institute of
Technology, Pasadena, California 91125
- Construction of Sequence-Ready
Physical Map of Human Chromosome
16p13.1-11.2 Region
Yicheng Cao, Diana Bocskai, Steve C. Mitchell,
Robert Xuequn Xu, So Hee Dho#, Jun-Ryul Huh#,
Byeong-Jae Lee#, Anna Glodek*, Mei Wang,
Enrique Colayco, Gony H. Kim, Christie Gomez,
Gabriella Rodriguez, Judith G. Tesmer**, Annabel
Echeverria, Robin Hua Li, Melvin I. Simon,
Norman A. Doggett**, Mark D. Adams*, and
Ung-Jin Kim
* The Institute for Genomic Research, Rockville, MD
** Human Genome Center, LANL, Los Alamos, NM
# Seoul National University, Seoul, Korea
- Large-Scale BAC End Sequencing to Aid
Sequence-Ready Map Construction
Mark D. Adams, Steve Rounsley, Casey Field,
Jenny Kelley, Steve Bass, Brook Craven, and J. Craig Venter
The Institute for Genomic Research, Rockville, MD 20850
- The Sequence Tagged Connector (STC)
Approach to Genomic Sequencing: Accelerating the Complete Sequencing of the Human
Genome
Gregory G. Mahairas, Keith D. Zackrone, Stephanie Tipton, Sarah Schmidt, Alan
Blanchard, Anne West, Joe Slagel and Leroy Hood
Department of Molecular Biotechnology,
University of Washington, Seattle, WA 98195
- Amplification and Sequencing of End
Fragments from Bacterial Artificial
Chromosome (BAC) Clones by
Single-Primer PCR
Joomyeong Kim, Ethan A. Carver, and Lisa
Stubbs
Human Genome Center, Lawrence Livermore
National Lab., PO Box 808, L-452, Livermore,
CA 94551
- Construction of a High Resolution
P1/PAC/BAC Map in the Distal Long
Arm of Chromosome 5 for Direct
Genomic Sequencing
Ze Peng, Steve Lowry, Duncan Scott, Yiwen Zhu,
Eddy Rubin and Jan-Fang Cheng
Joint Genome Institute, Lawrence Berkeley
National Laboratory, Berkeley, CA 94720
- An Integrated Genetic and Physical
Map of Human Chromosome 19: A
Resource for Large Scale Genomic
Sequencing and Gene Identification
L.A. Gordon, A. Georgescu, M. Christensen, S.
Ross, L. Woo, L.K. Ashworth, H. W.
Mohrenweiser, A.V. Carrano and A. S. Olsen
Human Genome Center, Biology and
Biotechnology Research Program, Lawrence
Livermore National Laboratory, Livermore, CA
94550
- Mapping by Two-Dimensional
Hybridization
Cliff S. Han, Mark O. Mundt, Linda J. Meincke,
Judy G. Tesmer, Robert K. Moyzis, Larry L.
Deaven and Norman A. Doggett
Life Sciences Division and Center for Human
Genome Studies, Los Alamos National
Laboratory, Los Alamos, NM 87545
- Estimates of Gene Densities in Human
Chromosome Bands
Norman A. Doggett, Robert D. Sutherland and
David C. Torney
Theoretical Division, Life Sciences Division, and
OHER Joint Genome Institute, Los Alamos
National Laboratory, Los Alamos, NM
- Mapping and Functional Analysis of
the Mouse Genome
Dabney K. Johnson, Edward J. Michaud, and
Monica J. Justice
Mammalian Genetics Section, Life Sciences
Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-8080
- The Albino (c) Region of Mouse Chr 7: A
Model for Mammalian Functional Genomics
M.J. Justice1, E.M. Rinchik2, D.A.
Carpenter1, S.E. Thomas1, and D.K. Johnson1
1 Mammalian Genetics Section, Life Sciences Division, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831
2 Sarah Lawrence College, Bronxville, New York 10708
- Comparative Mapping and Expression
Study of Two H19q13.4 Zinc-Finger
Gene Clusters in Man and Mouse
Joomyeong Kim, Mark Shannon, Linda
Ashworth, Elbert Branscomb, and Lisa Stubbs
Human Genome Center, Lawrence Livermore
National Laboratory, Livermore, CA 94551.
- One Origin of Man: Primate Evolution
Through Genome Duplication
Julie R. Korenberg, Xiao-Ning Chen, Steve
Mitchell, Rajesh Puri, Zheng-Yang Shi and Dean Yimlamai
Medical Genetics Birth Defects Center, The
CSMC Burns & Allen Research Institute, UCLA
School of Medicine, Los Angeles, CA
- Third-Strand In Situ Hybridization
(TISH) to Non-Denatured Metaphase
Spreads and Interphase Nuclei
Marion D. Johnson and Jacques R. Fresco
Princeton University/Washington Road/Princeton, NJ 08544
- New Male-Specific, Polymorphic
Tetranucleotide Microsatellites from
the Human Y Chromosome
P. Scott White1, Owatha L. Tatum1,2, Larry
Deaven1, Jonathan L. Longmire1
1Genomics Group and Center for Human Genome
Studies, Life Sciences Division, Los Alamos
National Laboratory, Los Alamos, NM 87545 and
2Dept. of Biological Sciences, Texas Tech
University, Lubbock, TX 79409
- In Vivo Libraries of the Human
Genome in Mice as a Reagent to Sift
Genomic Regions for Function
Rubin, E.M., Zhu, Y., Fraser, K., Ueda, Y.,
Smith, D.J., Symula, D., Cheng, J.F.
Joint Genome Institute, Lawrence Berkeley
National Laboratory, Berkeley, CA 94720
- Automatic BAC Contig Assembly by
Three-Color Fluorescent Restriction Fragments
Y. Ding, M. Johnson, Y. Chen, J. Colayco, J. Melnyk, S. Khan, D. Gilbert, and H.
Shizuya
Division of Biology, Caltech, Pasadena, CA 91125, PE Applied Biosystems, Foster City, CA
94404
- Construction and Characterization of
New BAC Libraries
Y. Sheng, Y-J. Chen, C. Neal, and H. Shizuya
Division of Biology, Caltech, Pasadena, CA 91125
- Completing the BAC-Based Physical
Map of Human Chromosome 22
Holger Schmitt, Mitzi Shpak, Yan Ding, Melvin
Simon, and Hiroaki Shizuya
Division of Biology, Caltech, Pasadena, CA 91125
- A Subdermal Physiological Monitoring
System For Mass Screening Mice In Gene Expression Studies
M. N. Ericson, D. K. Johnson, R. S. Burlage, T. L. Ferrell, D. E. McMillan, K. G.
Falter, A. D. McMillan, S. F. Smith, G. E. Jellison, and C. L. Britton, Jr.
Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006
- HLA Genotype Analysis of Chronic
Beryllium Disease Sensitivity
P. Scott White, Michelle Petrovic, Owatha L.
Tatum, Nancy Lehnert, Usha S-Nair, Zaolin
Wang, Larry L. Deaven, and Babetta Marrone
Los Alamos National Laboratory, Life Sciences
Division and Center for Human Genome Studies,
Los Alamos, New Mexico 87545
- A New Program to Develop a
High-Resolution, High-Throughput
Tomographic Imaging System for Mutagenized Mouse Phenotype Screening
M.J. Paulus, H. Sari-Sarraf, D.K. Johnson, D.H.
Lowndes, M. L. Simpson, C.L. Britton, Jr., F.F. Knapp, Jr., J.S. Hicks
Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006
- Quantitative Detection of Nucleic Acids
by Invasive Cleavage of Oligonucleotide Probes
Jeff G. Hall, Andrea L. Mast, Victor Lyamichev,
James R. Prudent, Michael W. Kaiser, Tsetska
Takova, Bob Kwiatkowski, Bruce Neri, and Mary Ann D. Brow
Third Wave Technologies, Inc., 2800 S. Fish Hatchery Rd., Madison, WI 53711
- Quantitative DNA Fiber Mapping
(QDFM) Techniques for Physical Map
Construction and Quality Control*
Heinz-Ulrich G. Weier, Stanislav Volik, Jenny
Wu, Thomas Duell, Mei Wang, Ung-Jin Kim1,
Jan-Fang Cheng and Joe W. Gray
Resource for Molecular Cytogenetics and Human
Genome Center, Life Sciences Division, University
of California, Lawrence Berkeley National
Laboratory, Berkeley, CA 94720, and 1California
Institute of Technology, Pasadena, CA
- Analysis of DNA Sequence Copy
Number Variation in Breast Tumors
and HPV16-Immortalized Cell Lines
Using Comparative Genomic
Hybridization to DNA Microarrays
D. G. Albertson1, R. Segraves2, D.
Sudar1,
S. Clark2, C. Collins1, C. Chen2, W.-L.
Kuo2, D. Kowbel1, S. H. Dairkee3, I.
Poole4, M. Dürst5, J.
W. Gray1,2 , D. Pinkel1,2
1 E. O. Lawrence Berkeley National Laboratory,
2University of California San Francisco,
3Geraldine Brush Cancer Research Institute,
4Vysis, Inc., 5Deutsches Krebsforschungszentrum
- Molecular Anatomy of a 20q13.2 Breast
Cancer Amplicon
C. Collins1, J. Rommens2, D. Kowbel1, G.
Nonet1, L. Stubbs3, M. Shannon3, M.
Wernick1, J. Froula1, G. Hutchinson4, T.
Godfrey5, D. Polikoff1, T. Cloutier1, K.
Myambo1, C. Martin1, M. Palazzolo1,
Dan Pinkel1,5, D. Albertson1,5, and J.W. Gray1,5
1 Lawrence Berkeley National Laboratory, Berkeley, CA
2 Hospital for Sick Children, Toronto, Canada
3 Lawrence Livermore National Laboratory, Livermore CA
4 RabbitHutch Biotechnology, B.C. Canada
5 University of California Cancer Center, San Francisco
- 3D Genetic Analysis of Thick Tissue
Specimens
SJ Lockett+, C Ortiz de Solorzano+, A
Jones+, E
Rodriguez+, K Chino, C Fernandezo, D
Sudar+, D
Pinkel+o, JW Gray+o
0+Resource for Molecular Cytogenetics, Life
Sciences Division, Ernest Orlando Lawrence
Berkeley National Laboratory, Berkeley, CA
94720, oCancer Center, University of California,
San Francisco, CA 94143
- New Single Molecule Approaches to Genomic
Analysis: Optical Mapping
David C. Schwartz, Thomas Anantharaman, Christopher Aston, Ginger Clarke,
Stephanie Delobette, Eileen Dimalanta, Joanne Edington, Ariella Evenzahav, Veronica Gibaja,
Yuzhi Gao, Joe Giacalone, Catharina Hiort, Edward Huff, Junping Jing, John Lai, Ernest Lee,
Jieyi Lin, Bud Mishra, Lei Ni, Brett Porter, Rong Qi, Arvind Ramanathan, Jason Reed, Akhtar
Samad, Alex Shenker, Yianni Skiadas, Hui Wang, Jonathan J. Vafai, Weining Wang, Hongjuan
Zhao
New York University
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