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Genomics Division WestGenome Sciences DepartmentErnest Orlando Lawrence Berkeley National Laboratory
Our lab is involved in development of computational algorithms and associated software for genomic sequence analysis. Among them are a comprehensive set of tools for comparative genomics including publicly available Web servers and software, visualization tools, DNA functional sites prediction, and others. These Web sites contain a more detailed description of our research projects, access to our computational tools and publications, free downloadable and web-based software, and other information. VISTA - a suite of programs and databases for comparative analysis of genomic sequences. The VISTA Enhancer Browser - a central resource for experimentally validated human noncoding fragments with gene enhancer activity as assessed in transgenic mice. RegTransBase -- a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. SNP-VISTA - an interactive SNP visualization tool. TreeQ-VISTA -
an interactive tree visualization tool with functional annotation query
capabilities.
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