Workshop Agenda

SNPWorkshop: Bioinformatics & Genotyping

Presenter: Debbie Nickerson, PhD.

Hosts: David Schwartz, M.D., M.P.H. and Samuel Wilson, M.D.
NIEHS - Research Triangle Park, North Carolina

Day 1 - January 30, 2006
Day 2 - January 31, 2006

Day 1 - January 30, 2006
9:00 - 9:15	Introduction to Genome Variation (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day1_900am_nickerson.pdf) (1.1 MB) (Debbie Nickerson, Ph.D.)

9:15 - 10:15	Finding SNPs (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day1_915am_rieder.pdf) (2.7 MB) (Mark Rieder, Ph.D.)
	Brief Review of SNP Discovery Methods
	SNP Databases
	Candidate Gene (NIEHS-oriented) Whole Genome

10:15 - 10:45	Break

10:45 - 12:00	Finding SNPs (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day1_1045am_rieder.pdf) (6.3 MB) (Mark Rieder, Ph.D.)
	Database Extraction
	SNP Summary Characteristics
	SNP Analysis

12:00 - 1:15	Lunch

1:15 - 2:45	SNP Selection (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day1_115pm_crawford.pdf) (1.8 MB) (Dana Crawford, Ph.D.)
	Linkage Disequilibrium
	Haplotype Inference
	Haplotype Tagging
	SNP/Haplotype Selection Methods

2:45 - 3:00	Break

3:00 - 4:30	Interactive Tutorial I: Database Interfaces (All) (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day1_300pm_tutorial1.pdf) (1.5 MB)
	dbSNP Using the HapMap, Mark Rieder, Ph.D. - Lead
	Entrez SNP
	SIFT
	PolyPhen PolyDoms, Bob Livingston, Ph.D. - Lead
	TraFaC
	VISTA and ECR

Day 2 - January 31, 2006
9:00 - 10:30	Interactive Tutorial II: Web Tools (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day2_900am_tutorial2.pdf) (364 KB) (All with Dana Crawford, Ph.D. - Lead)
	EGP Tools
	Site Selection
	Linkage Disequilibrium
	Haplotype Analysis
	GVS

10:30 - 10:45	Break

10:45 - 12:15	SNP Genotyping (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day2_1045am_nickerson.pdf) (6.2 MB) (Debbie Nickerson, Ph.D.)
	Technology Platforms
	Candidate Gene
	Whole Genome Data
	Quality Control

12:15 - 1:30	Lunch

1:30 - 3:15	Association Analysis (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day2_130pm_carlson.pdf) (1.7 MB) (Chris Carlson, Ph.D.)
	Study Design
	Haplotype Analysis vs. SNP Analysis
	Analysis Methods
	Candidate Gene
	Whole Genome
	Replication and Function

3:15 - 3:30	Break

3:30 - 4:00	Medical Resequencing (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day2_330pm_nickerson.pdf) (2.4 MB) (Debbie Nickerson, Ph.D.)

4:00 - 4:45	Advanced User Roundtable: High-Throughput Resequencing (http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/docs/day2_400pm_livingston.pdf) (3.9 MB)
	PolyPhred - Bob Livingston, Ph.D.

111 T.W. Alexander Drive, Research Triangle Park, NC USA 27709

This page URL: http://www.niehs.nih.gov/news/events/pastmtg/2006/snpwork/agenda.cfm
NIEHS website: http://www.niehs.nih.gov/
Email the Web Manager at webmanager@niehs.nih.gov

Last Reviewed: January 19, 2006

Workshop Agenda

SNPWorkshop: Bioinformatics & Genotyping

Day 1 - January 30, 2006

Day 2 - January 31, 2006