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HIV sequence database



The tables below allow you to create a customized search interface. For details, see Advanced Search Help.

Basic Instructions:

  1. Check the boxes for fields you want, either as fields to limit your search or to display in the results. Checking a blue field will select all fields in that table.
  2. Important: If you choose fields from multiple tables, make sure they share a key (shown in red), otherwise the search will fail. For example, suppose you want fields from the Patient, Sequence sample, and Accession tables. The Patient and Sequence sample tables need to be joined by the PAT id keys, and the Sequence sample and Accession tables need to be joined by the SE id keys. The selection of at least one SE id field will speed up sequence downloads.
  3. Click on "Make Search Interface". This will take you to a search interface composed of the selected fields.
  4. After limiting your search as desired, click "Search". Note: searches are case sensitive and have other differences from our regular search interface (see Help).
  5. From the search results page, you will have several options for downloading data and sequences.

Make  

Accession(SA)
SE id(SA)
Accession
Sequence sample(SSAM)
SE id(SSAM)
PAT id(SSAM)
Name
Locus name
Isolate name
Clone name
Country
Sampling city
Sampling year
Patient Age
Patient health
Organism
Subtype
Phenotype
Coreceptor
Sample tissue
Culture method
Molecule type
Georegion
Drug naive
Problematic
Viral load
CD4 count
CD8 count
Sampling year delta
Days post infection
Days from seroconversion
Patient(PAT)
PAT id
Patient code
Patient sex
Risk factor
Infection country
Infection city
Infection year
Patient comment
HLA type
Project
Patient ethnicity
Infection year delta
Progression
# of patient seqs
Map image(MI)
Map image(SE id)
MI start
MI stop
Sequence map(SM)
SE id(SM)
HXB2 start
HXB2 stop
Sequence entry(SE)
SE id
Sequence length
Sequence comment
Sequence
last modified
GB entry date
Publication link(SPL)
SE id(SPL)
PUB id(SPL)
Publication number
Publication(PUB)
PUB id
Medline ID
Title
Journal
Pubmed ID
Person(PER)
PER id
Last name
Initial(s)
Author(AU)
PUB id(AU)
PER id(AU)
Author number
Sequence entry feature(SEF)
SE id(SEF)
Feature type(SEF)
Description(SEF)
PUB id(SEF)
Location(LOC)
LOC id
SE id(LOC)
Feature type(LOC)
Description(LOC)
Sequence feature(SF)
LOC id(SF)
Feature type(SF)
Feature value(SF)
Feature text

Make  

last modified: Mon Sep 1 17:52 2008


Questions or comments? Contact us at seq-info@lanl.gov.