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HIV sequence database



Table: SEQ_SAMple
Number of rows: 50
Number of fields: 49
SSAM_SE_idSSAM_PAT_idSSAM_common_nameSSAM_locus_nameSSAM_authorsSSAM_Sample_yearSSAM_Sample_name_numberSSAM_Isolate_name_numberSSAM_Clone_name_numberSSAM_Isolation_countrySSAM_Isolation_citySSAM_Isolation_yearSSAM_patient_ageSSAM_health_statusSSAM_organismSSAM_regionSSAM_subtypeSSAM_phenotypeSSAM_second_receptorSSAM_sample_tissueSSAM_culture_methodSSAM_sequencing_methodSSAM_molecule_typeSSAM_statusSSAM_pathSSAM_DB_acquiredSSAM_Isolation_georegionSSAM_subtype_groupSSAM_hostname_curSSAM_timestampSSAM_Isolate_orderSSAM_Regimen_nameSSAM_Regimen_orderSSAM_Regimen_durationSSAM_drug_naiveSSAM_postSeroConvSSAM_postInfectSSAM_badseqSSAM_ViralLoadSSAM_CD4countSSAM_CD8countSSAM_Isolation_year_deltaSSAM_postInfect_daysSSAM_postSeroConv_daysSSAM_postSymptom_daysSSAM_lastSeroneg_daysSSAM_amplification_strategySSAM_ABnegRNAposSSAM_Fiebig
1236KB_2HIVENV2Shimizu, H, Hasebe, F, Tsuchie, H, Morikawa, S, Ushijima, H, Kitamura, T,KB-2 JP HIV-1env V3Bpub/V3/V3-SECTION-1995/fromGB-895/Kitamura1992ASIMpod.lanl.govMay 9 2006 2:30PM00
19387258PACKHIVPACKHayashi, T, Ueno, Y, Okamoto, T,NL43 FR Jan 1 1985 12:00AMHIV-1RNABpubGenBank1993EURM128.165.24.205Jan 7 2008 8:38AM00
1318GT1HIVGT1Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T,HIV-1GT1 INBombayMar 1 1992 12:00AMHIV-1V3 region, envCpub/V3/V3-SECTION-1995/fromGB-895/Kitamura1994ASIMpod.lanl.govMay 9 2006 2:30PM00
1327GT4HIVGT4Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T,HIV-1GT4 INBombayMar 1 1992 12:00AMHIV-1V3 region, envCpub/V3/V3-SECTION-1995/fromGB-895/Kitamura1994ASIMcowpox.lanl.govSep 3 2003 2:33PM00
1333GT6HIVGT6Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T,HIV-1GT6 INBombayMar 1 1992 12:00AMHIV-1V3 region, envApub/V3/V3-SECTION-1995/fromGB-895/Kitamura1994ASIMcowpox.lanl.govSep 3 2003 2:33PM00
1337GT7HIVGT7Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T,HIV-1GT7 INBombayMar 1 1992 12:00AMHIV-1V3 region, envCpub/V3/V3-SECTION-1995/fromGB-895/Kitamura1994ASIMcowpox.lanl.govSep 3 2003 2:33PM00
1340GT8HIVGT8Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T,HIV-1GT8 INBombayMar 1 1992 12:00AMHIV-1V3 region, envCpub/V3/V3-SECTION-1995/fromGB-895/Kitamura1994ASIMcowpox.lanl.govSep 3 2003 2:33PM00
16005POL2HIVPOL2Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M, HEJPHIV-1pol RTBpubGenBank1994ASIMpod.lanl.govMay 9 2006 2:30PM00
16008POL3HIVPOL3Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M,HEJPHIV-1pol RTBpubGenBank1994ASI00
16014POL5HIVPOL5Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M,HEJPHIV-1pol RTBpubGenBank1994ASIpod.lanl.govMay 9 2006 2:30PM00
20815267NY5HIVNY5Willey, RL, Rutledge, RA, Dias, S, Folks, T, Theodore, T, Buckler, CE, Martin, MA,NEW YORK-5 1984 USNew YorkJan 1 1984 12:00AMHIV-1envBpub$MASTER1987NAMMpod.lanl.govMay 9 2006 2:30PM9999009999
5533071DHIV3071DAlbert, J, Franzen, L, Jansson, M, Scarlatti, G, Kataaha, PK, Katabira, E, Mubiro, F, Rydaker, M, Rossi, P, Pettersson, U, Wigzell, H,UGANDA 3071D/1990 UG Jan 1 1990 12:00AMHIV-1partial env V3 loopDpubGenBank1992AFR SSAMpod.lanl.govMay 9 2006 2:30PM00
2033NET12 NET12XHIVNET12XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1partial env, V3 regionBpub$ANALYSIS1992EURM00
2039NET15XHIVNET15XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1V3BpubGenBank1992EURM00
2048NET31XHIVNET31XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1V3BpubGenBank1992EURM00
2054NET33XHIVNET33XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1V3BpubGenBank1992EURM00
2066NET51XHIVNET51XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1V3BpubGenBank1992EURM00
2072NET54XHIVNET54XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, NLHIV-1V3BpubGenBank1992EURM00
2257TAN101XHIVTAN101XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, TZTuriani (Morogoro)Jan 1 1988 12:00AMHIV-1env, V3CpubGenBank1992AFR SSAMpod.lanl.govMay 9 2006 2:30PM00
14844TAN91XHIVTAN91XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, TZTuriani (Morogoro)Jan 1 1988 12:00AMHIV-1env, V3ApubGenBank1992AFR SSAMpod.lanl.govMay 9 2006 2:30PM00
14849TAN93XHIVTAN93XZwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, TZTuriani (Morogoro)Jan 1 1988 12:00AMHIV-1env, V3ApubGenBank1992AFR SSAMpod.lanl.govMay 9 2006 2:30PM00
12499P2AHIV1P2AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
12502P3AHIV1P3AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
12508P5AHIV1P5AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
12514P7AHIV1P7AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
12520P9AHIV1P9AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
12493P10AHIV1P10AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,P1USHIV-1gagBpubGenBank1993NAM00
17891D2AHIV1D2AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
12334D3AHIV1D3AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
17892D4AHIV1D4AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
12337D5AHIV1D5AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
12343D8AHIV1D8AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
12328D10AHIV1D10AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,D1USHIV-1gagBpubGenBank1993NAM00
12600S2AHIV1S2AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12603S3AHIV1S3AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12609S5AHIV1S5AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12615S7AHIV1S7AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12621S9AHIV1S9AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12586S10AHIV1S10AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12588S11AHIV1S11AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
12594S13AHIV1S13AHolmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ,S1USHIV-1gagBpubGenBank1993NAM00
59647299PBJCSMMPBJ14B 5078 bp ss-RNA VDewhurst, S, Embretson, JE, Anderson, DC, Mullins, JI, Fultz, PN,PBj14clone 4.41USYerkesSIV3' half of genomeSMMpubGenBank1992NAMpod.lanl.govMay 9 2006 2:30PM00
59707299PBJEMMPBJ149 5094 bp ss-RNA VRDewhurst, S, Embretson, JE, Anderson, DC, Mullins, JI, Fultz, PN,PBj14clone 4.41USYerkesSIV3' half of genomeSMMpubGenBank1992NAMpod.lanl.govMay 9 2006 2:30PM00
12731304D3XHIV304D3XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12708304D25XHIV304D25XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12715304D27XHIV304D27XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12722304D33XHIV304D33XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12728304D37XHIV304D37XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12737304E8XHIV304E8XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
12755304F7XHIV304F7XMcNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, USHIV-1RNABpubGenBank1995NAMM00
last modified: Mon Sep 1 17:53 2008


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