SSAM_SE_id | SSAM_PAT_id | SSAM_common_name | SSAM_locus_name | SSAM_authors | SSAM_Sample_year | SSAM_Sample_name_number | SSAM_Isolate_name_number | SSAM_Clone_name_number | SSAM_Isolation_country | SSAM_Isolation_city | SSAM_Isolation_year | SSAM_patient_age | SSAM_health_status | SSAM_organism | SSAM_region | SSAM_subtype | SSAM_phenotype | SSAM_second_receptor | SSAM_sample_tissue | SSAM_culture_method | SSAM_sequencing_method | SSAM_molecule_type | SSAM_status | SSAM_path | SSAM_DB_acquired | SSAM_Isolation_georegion | SSAM_subtype_group | SSAM_hostname_cur | SSAM_timestamp | SSAM_Isolate_order | SSAM_Regimen_name | SSAM_Regimen_order | SSAM_Regimen_duration | SSAM_drug_naive | SSAM_postSeroConv | SSAM_postInfect | SSAM_badseq | SSAM_ViralLoad | SSAM_CD4count | SSAM_CD8count | SSAM_Isolation_year_delta | SSAM_postInfect_days | SSAM_postSeroConv_days | SSAM_postSymptom_days | SSAM_lastSeroneg_days | SSAM_amplification_strategy | SSAM_ABnegRNApos | SSAM_Fiebig |
---|
1236 | | KB_2 | HIVENV2 | Shimizu, H, Hasebe, F, Tsuchie, H, Morikawa, S, Ushijima, H, Kitamura, T, | | | KB-2 | | JP | | | | | HIV-1 | env V3 | B | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1992 | ASI | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
1938 | 7258 | PACK | HIVPACK | Hayashi, T, Ueno, Y, Okamoto, T, | | | NL43 | | FR | | Jan 1 1985 12:00AM | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1993 | EUR | M | 128.165.24.205 | Jan 7 2008 8:38AM | | | | | | | | 0 | | | | 0 | | | | | | | |
1318 | | GT1 | HIVGT1 | Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T, | | | HIV-1GT1 | | IN | Bombay | Mar 1 1992 12:00AM | | | HIV-1 | V3 region, env | C | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1994 | ASI | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
1327 | | GT4 | HIVGT4 | Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T, | | | HIV-1GT4 | | IN | Bombay | Mar 1 1992 12:00AM | | | HIV-1 | V3 region, env | C | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1994 | ASI | M | cowpox.lanl.gov | Sep 3 2003 2:33PM | | | | | | | | 0 | | | | 0 | | | | | | | |
1333 | | GT6 | HIVGT6 | Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T, | | | HIV-1GT6 | | IN | Bombay | Mar 1 1992 12:00AM | | | HIV-1 | V3 region, env | A | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1994 | ASI | M | cowpox.lanl.gov | Sep 3 2003 2:33PM | | | | | | | | 0 | | | | 0 | | | | | | | |
1337 | | GT7 | HIVGT7 | Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T, | | | HIV-1GT7 | | IN | Bombay | Mar 1 1992 12:00AM | | | HIV-1 | V3 region, env | C | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1994 | ASI | M | cowpox.lanl.gov | Sep 3 2003 2:33PM | | | | | | | | 0 | | | | 0 | | | | | | | |
1340 | | GT8 | HIVGT8 | Tsuchie, H, Maniar, JK, Yoshihara, N, Imai, M, Kurimura, T, Kitamura, T, | | | HIV-1GT8 | | IN | Bombay | Mar 1 1992 12:00AM | | | HIV-1 | V3 region, env | C | | | | | | | pub | /V3/V3-SECTION-1995/fromGB-895/Kitamura | 1994 | ASI | M | cowpox.lanl.gov | Sep 3 2003 2:33PM | | | | | | | | 0 | | | | 0 | | | | | | | |
16005 | | POL2 | HIVPOL2 | Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M, | | | HE | | JP | | | | | HIV-1 | pol RT | B | | | | | | | pub | GenBank | 1994 | ASI | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
16008 | | POL3 | HIVPOL3 | Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M, | | | HE | | JP | | | | | HIV-1 | pol RT | B | | | | | | | pub | GenBank | 1994 | ASI | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
16014 | | POL5 | HIVPOL5 | Seki, M, Seki, M, Sadakata, Y, Yuasa, S, Baba, M, Seki, M, | | | HE | | JP | | | | | HIV-1 | pol RT | B | | | | | | | pub | GenBank | 1994 | ASI | | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
2081 | 5267 | NY5 | HIVNY5 | Willey, RL, Rutledge, RA, Dias, S, Folks, T, Theodore, T, Buckler, CE, Martin, MA, | | | NEW YORK-5 1984 | | US | New York | Jan 1 1984 12:00AM | | | HIV-1 | env | B | | | | | | | pub | $MASTER | 1987 | NAM | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | 9999 | | 0 | | | | 0 | | 9999 | | | | | |
553 | | 3071D | HIV3071D | Albert, J, Franzen, L, Jansson, M, Scarlatti, G, Kataaha, PK, Katabira, E, Mubiro, F, Rydaker, M, Rossi, P, Pettersson, U, Wigzell, H, | | | UGANDA 3071D/1990 | | UG | | Jan 1 1990 12:00AM | | | HIV-1 | partial env V3 loop | D | | | | | | | pub | GenBank | 1992 | AFR SSA | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
2033 | | NET12 NET12X | HIVNET12X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | partial env, V3 region | B | | | | | | | pub | $ANALYSIS | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2039 | | NET15X | HIVNET15X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | V3 | B | | | | | | | pub | GenBank | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2048 | | NET31X | HIVNET31X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | V3 | B | | | | | | | pub | GenBank | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2054 | | NET33X | HIVNET33X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | V3 | B | | | | | | | pub | GenBank | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2066 | | NET51X | HIVNET51X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | V3 | B | | | | | | | pub | GenBank | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2072 | | NET54X | HIVNET54X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | NL | | | | | HIV-1 | V3 | B | | | | | | | pub | GenBank | 1992 | EUR | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
2257 | | TAN101X | HIVTAN101X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | TZ | Turiani (Morogoro) | Jan 1 1988 12:00AM | | | HIV-1 | env, V3 | C | | | | | | | pub | GenBank | 1992 | AFR SSA | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
14844 | | TAN91X | HIVTAN91X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | TZ | Turiani (Morogoro) | Jan 1 1988 12:00AM | | | HIV-1 | env, V3 | A | | | | | | | pub | GenBank | 1992 | AFR SSA | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
14849 | | TAN93X | HIVTAN93X | Zwart, G, Wolfs, TF, Bookelman, R, Hartman, S, Bakker, M, Boucher, CA, Kuiken, C, Goudsmit, J, | | | | | TZ | Turiani (Morogoro) | Jan 1 1988 12:00AM | | | HIV-1 | env, V3 | A | | | | | | | pub | GenBank | 1992 | AFR SSA | M | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
12499 | | P2A | HIV1P2A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12502 | | P3A | HIV1P3A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12508 | | P5A | HIV1P5A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12514 | | P7A | HIV1P7A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12520 | | P9A | HIV1P9A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12493 | | P10A | HIV1P10A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | P1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
17891 | | D2A | HIV1D2A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12334 | | D3A | HIV1D3A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
17892 | | D4A | HIV1D4A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12337 | | D5A | HIV1D5A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12343 | | D8A | HIV1D8A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12328 | | D10A | HIV1D10A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | D1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12600 | | S2A | HIV1S2A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12603 | | S3A | HIV1S3A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12609 | | S5A | HIV1S5A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12615 | | S7A | HIV1S7A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12621 | | S9A | HIV1S9A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12586 | | S10A | HIV1S10A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12588 | | S11A | HIV1S11A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12594 | | S13A | HIV1S13A | Holmes, EC, Zhang, LQ, Simmonds, P, Roders, AS, Leigh-Brown, AJ, | | | S1 | | US | | | | | HIV-1 | gag | B | | | | | | | pub | GenBank | 1993 | NAM | | | | | | | | | | | 0 | | | | 0 | | | | | | | |
5964 | 7299 | PBJC | SMMPBJ14B 5078 bp ss-RNA V | Dewhurst, S, Embretson, JE, Anderson, DC, Mullins, JI, Fultz, PN, | | | PBj14 | clone 4.41 | US | Yerkes | | | | SIV | 3' half of genome | SMM | | | | | | | pub | GenBank | 1992 | NAM | | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
5970 | 7299 | PBJE | MMPBJ149 5094 bp ss-RNA VR | Dewhurst, S, Embretson, JE, Anderson, DC, Mullins, JI, Fultz, PN, | | | PBj14 | clone 4.41 | US | Yerkes | | | | SIV | 3' half of genome | SMM | | | | | | | pub | GenBank | 1992 | NAM | | pod.lanl.gov | May 9 2006 2:30PM | | | | | | | | 0 | | | | 0 | | | | | | | |
12731 | | 304D3X | HIV304D3X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12708 | | 304D25X | HIV304D25X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12715 | | 304D27X | HIV304D27X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12722 | | 304D33X | HIV304D33X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12728 | | 304D37X | HIV304D37X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12737 | | 304E8X | HIV304E8X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |
12755 | | 304F7X | HIV304F7X | McNearney, T, Hornickova, Z, Markham, R, Birdwell, A, Arens, M, Saah, A, Ratner, L, | | | | | US | | | | | HIV-1 | RNA | B | | | | | | | pub | GenBank | 1995 | NAM | M | | | | | | | | | | 0 | | | | 0 | | | | | | | |