HIV HLA Anchor Residue Motifs (Motif Scan)

This page serves three functions: (1) find HLA anchor residue motifs within protein sequences for specified HLA genotypes, serotypes, or supertypes, (2) search any single protein for all known HLA anchor residue motifs, and (3) view motif libraries. For details, refer to the Motif Scan Help page.

 

Search Proteins for Specified Motifs

Select the motif type(s) of interest and submit. On the next page, you may choose HIV-1 consensus proteins to search, and/or enter your own protein sequences.

HLAs	Genotype Serotype Supertype A*01 A*0101 A*0201 A*0202 A*0204 A*0205 A*0206 A*0207 A*0214 A*0217 A*03 A*0301 A*1101 A*24 A*2402 A*2501 A*2601 A*2602 A*2603 A*2902 A*3001 A*3002 A*3003 A*3004 A*3101 A*3201 A*3303 A*6601 A*6801 A*6802 A*6901 B*07 B*0702 B*0703 B*0705 B*08 B*0801 B*0802 B*14 B*1402 B*1501 B*1502 B*1503 B*1508 B*1509 B*1510 B*1512 B*1513 B*1516 B*1517 B*1518 B*18 B*27 B*2701 B*2702 B*2703 B*2704 B*2705 B*2706 B*2707 B*2709 B*2710 B*35 B*3501 B*3503 B*3505 B*3701 B*3801 B*3901 B*3902 B*3909 B*40 B*4001 B*4002 B*4006 B*4201 B*44 B*4402 B*4403 B*4601 B*4801 B*5101 B*5102 B*5103 B*5201 B*5301 B*5401 B*5501 B*5502 B*5601 B*5701 B*5702 B*5801 B*5802 B*6701 B*7301 B*7801 B*8101 Cw*0102 Cw*0103 Cw*0202 Cw*0203 Cw*0301 Cw*0302 Cw*0303 Cw*0304 Cw*0305 Cw*0306 Cw*0307 Cw*0308 Cw*0309 Cw*0401 Cw*0402 Cw*0403 Cw*0404 Cw*0405 Cw*0406 Cw*0501 Cw*0502 Cw*0601 Cw*0602 Cw*0603 Cw*0604 Cw*0701 Cw*0702 Cw*0703 Cw*0704 Cw*0705 Cw*0706 Cw*0707 Cw*0708 Cw*0709 Cw*0710 Cw*0711 Cw*0712 Cw*0801 Cw*0802 Cw*0803 Cw*0804 Cw*0805 Cw*0806 Cw*1202 Cw*1203 Cw*1204 Cw*1205 Cw*1206 Cw*1402 Cw*1403 Cw*1404 Cw*1502 Cw*1503 Cw*1504 Cw*1505 Cw*1506 Cw*1507 Cw*1601 Cw*1602 Cw*1604 Cw*1701 Cw*1702 Cw*1801 Cw*1802 DPA1*0102/DPB1*0201 DPA1*0103/DPB1*0201 DPA1*0201/DPB1*0401 DPA1*0201/DPB1*0901 DPB1*0301 DQA1*0101/DQB1*0501 DQA1*0102/DQB1*0602 DQA1*0301/DQB1*0301 DQA1*0301/DQB1*0302 DQA1*0501/DQB1*0201 DQA1*0501/DQB1*0301 DQB1*0602 DRB1*0101 DRB1*0102 DRB1*0301 DRB1*0301 or DRB3*0201 DRB1*0401 DRB1*0401 or DRB4 DRB1*0401 or DRB4*0101 DRB1*0402 or DRB4 DRB1*0404 or DRB4 DRB1*0405 or DRB4 DRB1*0405 or DRB4*0101 DRB1*0407 or DRB4 DRB1*0701 DRB1*0801 DRB1*0901 or DRB4*0101 DRB1*1101 DRB1*1101 or DRB3*0202 DRB1*1104 DRB1*1201 or DRB3 DRB1*1301 DRB1*1301 or DRB3*0101 DRB1*1302 DRB1*1302 or DRB3*1301 DRB1*1501 DRB1*1501 or DRB5*0101 DRB3*0202 DRB3*0301 DRB5*0101 A1 A2 A3 A11 A24(9) A25(10) A26(10) A29(19) A30(19) A31(19) A32(19) A33(19) A66(10) A68(28) A69(28) B7 B8 B27 B35 B40 B42 B46 B48 B53 B67 B70 B73 B78 B81 B703 B3901 B3902 B5102 B5103 B51(5) B52(5) B38(16) B39(16) B44(12) B54(22) B55(22) B56(22) B57(17) B58(17) B60(40) B61(40) B62(15) B63(15) B65(14) B71(70) B72(70) B75(15) B76(15) B77(15) B*07 B*08 B*14 B*18 B*27 B*35 B*37 Cw1 Cw2 Cw3 Cw4 Cw5 Cw6 Cw7 Cw8 Cw9(w3) Cw10(w3) DPw2 DPw3 DPw4 DQ2 DQ5(1) DQ6(1) DQ7(3) DQ8(3) DR1 DR4 DR7 DR8 DR9 DR51 DR52 DR11(5) DR12(5) DR13(6) DR15(2) DR17(3) A1 A2 A24 A3 B27 B44 B58 B62 B7
Motif Source	Marsh2000 SYFPEITHI Others
Motif Length	8 9 10 11
Custom Motif

 

 

---

 

Search a Protein for All Motifs

Paste one protein sequence in raw format Sample Input

 

 

---

 

View or Download Data Dictionaries

View or download the HLA genotype/serotype dictionary.

View or download the HLA genotype/motif dictionary.

View or download the HLA supertype dictionary.