Scientific Posters

Note: neither these posters nor their contents may be reproduced except by permission of JGI.

JGI Sequencing Projects: Statistics and Timelines (JGI User Meeting 2007) Tijana Glavina del Rio, Kerrie Barry, Lynne Goodwin, Miranda Harmon-Smith, Harris Shapiro, Susan Lucas and David Bruce.

What’s new in project management? A Look at the JGI Project Management Office (JGI User Meeting 2007) David Bruce, Lynne Goodwin, Kerrie Barry, Susannah Tringe, Tijana Glavina del Rio

Comparison of Protocols for Isolating Large Insert Clone DNA that is Suitable for High Throughput Library Construction (JGI User Meeting 2007) Karla Ikeda, Eileen Dalin, Miranda Harmon-Smith, Jan-Fang Cheng, Susan Lucas, & JGI Production Sequencing Department

Microbial Genomics, Comparative and Functional Analyses at JGI-LLNL (JGI User Meeting 2007) Stephanie Malfatti, Lisa Vergez, Maria Shin, Mari Christensen, Jeff Elliott, Dorothy Lang and Patrick Chain

Automating the JGI’s Community Sequencing Program (JGI User Meeting 2007) Jayant Patil, Joni Fazo, Art Kobayashi, Annette Greiner, Arkady Voloshin, Pat Kale, Marsha Fenner, David Bruce, Jan-Fang Cheng, and Jim Bristow

Fosmid Ditags as a New Technology Developed at JGI (JGI User Meeting 2007) Ze Peng, Ilya Malinov, Doug Smith, Feng Chen, Paul Richardson, Len A. Pennacchio, and Jan-Fang Cheng

Life-cycle of a JGI Microbial Finishing Project - LANL (JGI User Meeting 2007) David Sims, Olga Chertkov, Chris Munk, Hajnalka Kiss, Liz Saunders, Sue Thompson, Linda Meincke and Cliff Han

Fosmid RCA Production Line at JGI (JGI User Meeting 2007) Damon Tighe, Feng Chen, Jan-Fang Chen, Nancy Hammon, James Han, Alex Copeland, Alla Lapidus, Hui Sun, David Hillman, Jamie Jett, David Robinson, Arshi Khan

An Overview of the Joint Genome Institute Production Sequencing Line (JGI User Meeting 2007) Chris Wong, Miranda Harmon-Smith, Kathleen Lail, Chris Daum, and Lena Philip

Assembler Complementation Tool (Finishing in the Future 2006); Vasanth Singan, Stephan Trong, Eugene Goltsman, Alla Lapidus

Whole Genome Shotgun Library Approach For Microbial Sequencing Projects at the JGI (Finishing in the Future 2006); Eileen M. Dalin, Doug Smith, Hope Tice, Kerrie Barry, Alla Lapidus, David Bruce, and Paul M. Richardson

Statistical Methods for Troubleshooting of Genomic Shotgun Data (Finishing in the Future 2006); Eugene Goltsman, Vasanth Singan, Stephan Trong, Alla Lapidus, Kerrie Barry, Alex Copeland

Microbial Finishing at DOE Joint Genome Institute (JGI): Sequencing Difficult DNA Templates (Finishing in the Future 2006); Michele Martinez, Paul Richardson, Alla Lapidus

An Overview of the Library Support Process Used at the Joint Genome Institute Production Genomics Facility (JGI User Meeting 2006); Catherine Adam, KarliIkeda, Sandy Huynh, Jayadevi Krishnakumar, Jim Fey, Diane Bauer, SannaAnwar, Mansi Chovatia, Nicole Shapiro, Miranda Harmon-Smith

An Overview of the Capillary Electrophoresis Process at the DOE Joint Genome Institute Production Genomics Facility: The Dual Operation of the AB 3730xl & GE MegaBACE 4500 DNA Sequence Analyzers (JGI User Meeting 2006); Christopher Daum, Lena Philip, Danielle Mihalkanin, Cailyn Spurrell, Don Miller, Susan M. Lucas, Alex Copeland, Damon Tighe, Eric Abbott, Marlon Arcaina, Nicholas Eattock, Melanie Lafrades, Albert Linkowski, Adrienne Loero-Pequignot, Andy Yuen, Mathew Zane

A Statistical Monitoring and Diagnosis System for High-Throughput DNA Sequencing (RECOMB06); Mingkun Li , Alex C. Copeland, Susan Lucas

The Joint Genome Institute User Facility Sequencing Programs (ECI2006); Paul Richardson, David Bruce, Susan Lucas, Thomas Brettin, Paul Gilna, Jim Bristow, Eddy Rubin and the JGI Sequencing Staff

The Joining of Competitors: The Dual Operation of the ABI 3730xl and GE MegaBACE4500 DNA Sequence Analyzers at the DOE Joint Genome Institute (AGBT 2006); Christopher Daum, Damon Tighe, Lena Philip, Danielle Mihalkanin, Cailyn Spurrell, Don Miller, Alex Copeland, Susan M. Lucas and the JGI Sequencing Team

JGI Portfolio (AGBT 2006); Tijana Glavina del Rio, Susan M. Lucas, Alex Copeland, Kerrie Barry, Paul Richardson, Miranda Harmon-Smith, Eileen Dalin, Hope Tice, Harris Shapiro, Jasmyn Pangilinan, David Bruce, Alla Lapidus, Daniel Rokhsar, Darren Platt, Jim Bristow and the JGI Sequencing Team

High Performance Magnetic Separation Technology for Microtiter Plates, Microarrays,
Single Molecule Manipulation and Beyond (LabAutomation 2006); David Humphries and Martin Pollard

Implementation of a CyBio Integrated System to Aliquot Amplified DNA and Dispense DNA Sequencing Chemistry (LabAutomation 2006); Simon Roberts, Martin Pollard, Bruce Gray, Kecia Duffy-Wei, Steven Wilson, and Nancy Hammon

Implementing Automated 384 well Fosmid Prep at JGI (LabAutomation 2006); Steven Wilson, Feng Chen, Jamie Jett, Nancy Hammon, Duane Kubischta, Simon Roberts, Charles Reiter, Diana Lawrence, and Paul Richardson

The US DOE Joint Genome Institute Microbial Genome Program (PAG 2006); Alla Lapidus, Patrick Chain, Cliff Han, Thomas Brettin, Alex Copeland, Chris Detter, Samuel Pitluck, Tijana Glavinadelrio, Susan Lucas, Kerrie Berry, Miriam Land, Frank Larimer, Nikos Kyrpides, Natalia Ivanova, Jeremy Schmutz, Victor M Markowitz, David Bruce, Paul Gilna, Jim Bristow, Eddy Rubin , and Paul Richardson

Comparison of 454 Sequencing Platform with Traditional Sanger Sequencing: a Case Study with de novo Sequencing of Prochlorococcus marinus NATL2A Genome (PAG 2006); Feng Chen, Joseph Alessi, Edward Kirton, Vasanth Singan, and Paul Richardson

Quality Control of JGI Microbial Sequencing Projects (ICMG 2005); Kerrie W. Barry, Alla L. Lapidus, Eugene V. Goltsman, Matt P. Nolan, Joel A. Martin, Mingkun Li, Paul M. Richardson, and Alex C. Copeland

Integrated Microbial Genomes Genomic Data Analysis System (ICMG 2005); V.M. Markowitz, K. Palanniappan, E. Szeto, F. Korzeniewski, G. Werner, A. Greiner, A. Padki, K. Taylor, P. Hugenholtz, K. Mavromatis, I. Anderson, A. Lykidis, N. Ivanova, and N.C. Kyrpides