Ecosystems
Software
CWD Simulation App
Chronic wasting disease (CWD) is a fatal disease of deer, elk, and moose transmitted through direct contact and via environmental contamination. This software provide tools to simulate CWD and harvest management scenarios. These models were developed by the U.S. Geological Survey (USGS) in collaboration with Montana Fish, Wildlife, and Parks.
GenEst - A Generalized Estimator of Mortality
GenEst, a generalized estimator of wildlife mortality at renewable energy facilities.
SSR_pipeline: Computer Software for the Identification of Microsatellite Sequences from Paired-End Illumina High-Throughput DNA Sequence Data
SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (SSRs; for example, microsatellites) from paired-end high-throughput Illumina DNA sequencing data.
fatalityCMR
Capture-recapture software to correct raw counts of wildlife fatalities using trial experiments for carcass detecition probability and persistence time.
Evidence of Absence (EoA) Software and User's Guide
Software to Estimate Bird and Bat Fatality at Wind Farms
AquaPathogen X: A Template Database for Tracking Field Isolates of Aquatic Pathogens
Aquatic Pathogen Template Database (AquaPathogen X)
Wildlife Software and Models
A suite of software tools and models developed by Colorado State University and the USGS Colorado Cooperative Fish And Wildlife Research Unit.
monitoR: Acoustic template detection in R
Tools for automated acoustic monitoring of nature.
R for Fisheries and Wildlife Applications
FW599: An introduction to data management and R for Fisheries and Wildlife applications--- a lighthearted look
InVEST: 18 different models for ecosystem services
The InVEST tool allows researchers to evaluate relationships between land management actions and wild bee populations.
Fatality Estimator Software
Tool to Evaluate Wildlife Fatalities at Wind-Power Facilities
CloseTest
CloseTest is a Windows program for testing capture-recapture data