TARGET Data Matrix

Last Updated: August 24, 2020
Links to TARGET Homepage TARGET Program
Link to instructions on how to use the data Using TARGET Data
Link to Procedures and Methods TARGET Methods
DNA Helix with bullseye target. Links to TARGET Analysis Working Group TARGET Analysis Working Group
Pediatric Resource Pediatric Resource

The Genomic Data Commons (GDC) is currently working on developing their whole genome sequencing (WGS) analysis pipeline. While some TARGET analyzed WGS data is already available via the GDC Data Portal, not all aliquots have completed the analysis phase. The TARGET aliquots that are currently still undergoing WGS analysis at the GDC are listed here: https://ocg.cancer.gov/TARGET-WGS-Aliquots-Undergoing-Analysis-At-GDC.

Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Acute Lymphoblastic Leukemia (ALL)
ALL Phase 1 (B-ALL)
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Whole Genome
View Cases*
DCC Controlled†
FASTQ/BAM†
Whole Genome Lite
View Cases*
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Kinome
113 Genes*
Kinome Linking Table†
ALL Phase 2 (B-ALL, T-ALL, Dicentric, Xenograft)
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
NimbleGen HELP
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
ALL Phase 3 (ALAL)
Clinical File
Sample Matrix
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Acute Myeloid Leukemia (AML)
AML
Clinical File
Sample Matrix
Affymetrix Gene ST
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 27k
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Kidney Tumors
Wilms Tumor (WT)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Clear Cell Sarcoma of the Kidney (CCSK)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Rhabdoid Tumor (RT)
Clinical File
Clinical File†
Sample Matrix
Illumina Human Methylation450
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Bisulfite-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
ChIP-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Neuroblastoma (NBL)
NBL
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Illumina 550k SNP
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Osteosarcoma (OS)
OS
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
MegaPlex TaqMan
DCC Open*
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
FASTQ/BAM†
Pan-cancer Model Systems (MDLS)
NBL Model Systems
Clinical File
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Pediatric Preclinical Testing Program (PPTP)
Clinical File
Sample Matrix
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Whole Exome
DCC Open*
FASTQ/BAM†

Projects and assays with available information or data are hyperlinked

ALL Phase 1 (B-ALL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
Whole Genome
View Cases*
DCC Controlled†
FASTQ/BAM†
Whole Genome Lite
View Cases*
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
Kinome
113 Genes*
Kinome Linking Table†
ALL Phase 2 (B-ALL, T-ALL, Dicentric, Xenograft)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
NimbleGen HELP
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
ALL Phase 3 (ALAL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
AML
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Gene ST
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 27k
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
Wilms Tumor (WT)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
Clear Cell Sarcoma of the Kidney (CCSK)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
Rhabdoid Tumor (RT)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
Copy Number:
Methylation:
Illumina Human Methylation450
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Bisulfite-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
ChIP-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
NBL
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Illumina 550k SNP
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Targeted Resequencing
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
OS
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
MegaPlex TaqMan
DCC Open*
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
mRNA-seq
DCC Open*
FASTQ/BAM†
Other:
NBL Model Systems
Patient Data:
Clinical File
Gene Expression:
Copy Number:
Methylation:
MiRNA:
Sequence:
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Whole Exome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Other:
Pediatric Preclinical Testing Program (PPTP)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
Whole Exome
DCC Open*
FASTQ/BAM†
*
Other: