Skip directly to search Skip directly to A to Z list Skip directly to navigation Skip directly to page options Skip directly to site content

Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Dec 17, 2020. (Total: 16531 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Diagnostic accuracy of Loop mediated isothermal amplification coupled to Nanopore sequencing for the detection of SARS-CoV-2 infection at scale in symptomatic and asymptomatic populations
Ptasinska A, et al. medRxiv, Dec 16, 2020.
One Year of SARS-CoV-2: How Much Has the Virus Changed?
Vilar S, Isom DG. bioRxiv, Dec 16, 2020.
Genetic diversity, phylogeography, and evolutionary dynamics of highly pathogenic avian influenza A (H5N6) viruses.
Zhang Jiahao et al. Virus evolution 2020 Jul (2) veaa079
Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.
Sun Jiya et al. Frontiers in microbiology 2020 593857
Evolution and epidemiologic dynamics of dengue virus in Nicaragua during the emergence of chikungunya and Zika viruses.
Edgerton Sean V et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2020 Dec 104680
Emergence of a Highly Fit SARS-CoV-2 Variant.
Baric Ralph S et al. The New England journal of medicine 2020 Dec
Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals
Doddapaneni H, et al. bioRxiv, Dec 11, 2020.
The MERS-CoV receptor gene is among COVID-19 risk factors inherited from Neandertals
Zeberg H, Paabo S. bioRxiv, Dec 12, 2020.
Recurrent emergence and transmission of a SARS-CoV-2 Spike deletion delta-H69/delta-V70
Kemp SA, et al. bioRxiv, Dec 15, 2020.
No detectable signal for ongoing genetic recombination in SARS-CoV-2
Richard D, et al. bioRxiv, Dec 15, 2020.
Rapid detection of SARS-CoV-2 with Cas13
Agrawal S, et al. medRxiv, Dec 16, 2020.
Common genetic variants identify therapeutic targets for COVID-19 and individuals at high risk of severe disease
Horowitz JE, et al. medRxiv, Dec 16, 2020.
Shared genetic etiology between idiopathic pulmonary fibrosis and COVID-19 severity
Fadista J, et al. medRxiv, Dec 16, 2020.
How a torrent of COVID science changed research publishing in seven charts
Else H. Nature, Dec 16, 2020.
NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Martí-Carreras Joan et al. Viruses 2020 Dec (12)
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP).
Buono SA, et al. Front Genet 2020 Nov 26;11:601870. Brand Brand
Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies.
Napier Gary et al. Genome medicine 2020 Dec (1) 114
Non-B variants of HIV-1 in San Francisco, California.
O'Keefe Kara J et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2020 Dec 104677
DarkQ: Continuous genomic monitoring using message queues
Viehweger A, et al. bioRxiv, Nov 14, 2020.
Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea.
Miotto Olivo et al. PLoS pathogens 2020 Dec (12) e1009133
Design and evaluation of a data anonymization pipeline to promote Open Science on COVID-19.
Jakob Carolin E M et al. Scientific data 2020 12 (1) 435
Targeting viral genome synthesis as broad-spectrum approach against RNA virus infections.
Huchting Johanna et al. Antiviral chemistry & chemotherapy 2040206620976786

more

This Week's CDC Authored Publications

Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP). External Web Site Icon
Buono SA, et al. Front Genet 2020 Nov 26;11:601870. Brand Brand
Mathematical Model of the Role of Asymptomatic Infection in Outbreaks of Some Emerging Pathogens. External Web Site Icon
Siewe Nourridine et al. Tropical medicine and infectious disease 2020 Dec (4) Brand
Features of Streptococcus agalactiae strains recovered from pregnant women and newborns attending different hospitals in Ethiopia. External Web Site Icon
Ali Musa Mohammed et al. BMC infectious diseases 2020 Nov (1) 848 Brand Brand
Development of a Subtyping Tool for Zoonotic Pathogen Cryptosporidium Canis . External Web Site Icon
Jiang Wen et al. Journal of clinical microbiology 2020 Dec Brand
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020. External Web Site Icon
Karmarkar Ellora et al. Infection control and hospital epidemiology 2020 Dec 1-20 Brand Brand
Safety and immunogenicity of two novel type 2 oral poliovirus vaccine candidates compared with a monovalent type 2 oral poliovirus vaccine in children and infants: two clinical trials. External Web Site Icon
Sáez-Llorens Xavier et al. Lancet (London, England) 2020 Dec Brand
Safety and immunogenicity of two novel type 2 oral poliovirus vaccine candidates compared with a monovalent type 2 oral poliovirus vaccine in healthy adults: two clinical trials. External Web Site Icon
De Coster Ilse et al. Lancet (London, England) 2020 Dec Brand

Top 5 Most Viewed

The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(754 reads)
Can Viruses in the Genome Cause Disease?
Zimmer K. The Scientist, Jan 1, 2019.
(732 reads)
Amblyomma americanum (Acari: Ixodidae) Ticks Are Not Vectors of the Lyme Disease Agent, Borrelia burgdorferi (Spirocheatales: Spirochaetaceae): A Review of the Evidence.
Stromdahl Ellen Y et al. Journal of medical entomology 2018 05 (3) 501-514 Brand Brand

(592 reads)
FliesÂ’ Feet Can Spread Bacteria
Grens K. The Scientist, Nov 27, 2017.
(549 reads)
Using the Plasmodium mitochondrial genome for classifying mixed-species infections and inferring the geographical origin of P. falciparum parasites imported to the U.S.
Schmedes Sarah E et al. PloS one 2019 (4) e0215754 Brand

(516 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 16531
  • Total CDC-Authored Publications: 1499
  • Total Categories: 9
TOP