CGCI Data Matrix

Last Updated: October 14, 2020

CGCI data matrix is being continuously updated as new data from ongoing projects become available. See "How to Navigate the CGCI Data Matrix" for details on different types of available CGCI data. 

The Genomic Data Commons (GDC) is currently working on developing their whole genome sequencing (WGS) analysis pipeline. While some CGCI analyzed WGS data is already available via the GDC Data Portal, not all aliquots have completed the analysis phase. The CGCI aliquots that are currently still undergoing WGS analysis at the GDC are listed here: https://ocg.cancer.gov/file/cgciwgsaliquotsunderanalysisatgdcxlsx. 

Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Burkitt's Lymphoma (BLGSP) - Ongoing
Burkitt's Lymphoma (BLGSP)
Clinical File
Sample Matrix
Pathology Images
Biospecimen Data
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
DCC Open*
DCC Controlled†
HIV+ Tumor Molecular Characterization Project (HTMCP) - Ongoing
HIV+ Diffuse Large B-Cell Lymphoma (HTMCP-DLBCL)
Clinical File
Sample Matrix
Pathology Images
mRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
miRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
HIV+ Cervical Cancers (HTMCP-CC)
Clinical File
Sample Matrix
Pathology Images
Biospecimen Data
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Controlled†
Methylation array
DCC Open*
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Controlled†
ChIP-seq
FASTQ/BAM†
DCC Open*
DCC Controlled †
HIV+ Lung Cancers (HTMCP-LC)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
miRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
Non-Hodgkin's Lymphoma (NHL) - Completed
Diffuse Large B-Cell Lymphoma (NHL-DLBCL)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Follicular Lymphoma (NHL-FL)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†

Projects and assays with available information or data are hyperlinked

Burkitt's Lymphoma (BLGSP)
Patient Data:
Clinical File
Sample Matrix
Pathology Images
Biospecimen Data
Gene Expression:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
miRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
DCC Open*
DCC Controlled†
Other:
HIV+ Diffuse Large B-Cell Lymphoma (HTMCP-DLBCL)
Patient Data:
Clinical File
Sample Matrix
Pathology Images
Gene Expression:
mRNA-seq
FASTQ/BAM†
Copy Number:
Whole Genome
FASTQ/BAM†
miRNA:
miRNA-seq
FASTQ/BAM†
Sequence:
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
Other:
HIV+ Cervical Cancers (HTMCP-CC)
Patient Data:
Clinical File
Sample Matrix
Pathology Images
Biospecimen Data
Gene Expression:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Controlled†
miRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Controlled†
Other:
ChIP-seq
FASTQ/BAM†
DCC Open*
DCC Controlled †
HIV+ Lung Cancers (HTMCP-LC)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
mRNA-seq
FASTQ/BAM†
Copy Number:
Whole Genome
FASTQ/BAM†
miRNA:
miRNA-seq
FASTQ/BAM†
Sequence:
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
Other:
Diffuse Large B-Cell Lymphoma (NHL-DLBCL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
mRNA-seq
FASTQ/BAM†
DCC Open*
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Open*
miRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Follicular Lymphoma (NHL-FL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
mRNA-seq
FASTQ/BAM†
DCC Open*
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Open*
miRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other: