NCBI Variation Summary
Description:
Summary of variation data by organism available from dbSNP and dbVar.
Please contact dbSNP or dbVar if you have any problems or to submit variant data for your organism.
Report date: Friday, January 27, 2017
Total Variants:
SubSNP count: 1,682,955,638
RefSNP count: 788,704,808
Variant Call count: 36,835,190
Variant Region count: 6,458,655
| Organism | Common Name | Taxon ID | dbSNP | dbVar |
|---|---|---|---|---|
| Anas platyrhynchos | mallard | 8839 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 1.3 Million SubSNP Count: 1.3 Million Assembly: BGI_duck_1.0 Data: Search, FTP Genome Data Viewer: BGI_duck_1.0 |
|
| Anopheles gambiae | African malaria mosquito | 7165 |
Last Updated: Build 137 (Jun 26, 2012) RefSNP Count: 1.6 Million SubSNP Count: 1.9 Million Assembly: AgamP3 Data: Search, FTP |
|
| Apis mellifera | honey bee | 7460 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 4.2 Million SubSNP Count: 4.7 Million Assembly: Amel_4.5 Data: Search, FTP Genome Data Viewer: Amel_4.5 |
|
| Arabidopsis thaliana | thale cress | 3702 |
Last Updated: Build 138 (Apr 25, 2013) RefSNP Count: 1.1 Million SubSNP Count: 1.2 Million Assembly: TAIR10 Data: Search, FTP Genome Data Viewer: TAIR10 |
|
| Aspergillus fumigatus | ascomycetes | 746128 |
Last Updated: Build 139 (Oct 25, 2013) RefSNP Count: 115 Thousand SubSNP Count: 876.4 Thousand Assembly: ASM265v1 Data: Search, FTP |
|
| Astyanax mexicanus | bony_fish | 7994 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 507 SubSNP Count: 737 Assembly: Astyanax_mexicanus-1.0.2 Data: Search, FTP Genome Data Viewer: Astyanax_mexicanus-1.0.2 |
|
| Bison bison | American bison | 9901 |
Last Updated: Build 128 (Oct 25, 2007) RefSNP Count: 6 SubSNP Count: 6 Assembly: Btau_3.1 Data: Search, FTP |
|
| Bos indicus x Bos taurus | hybrid cattle | 30522 |
Last Updated: Build 128 (Oct 25, 2007) RefSNP Count: 2.4 Thousand SubSNP Count: 2.5 Thousand Assembly: Btau_3.1 Data: Search, FTP |
|
| Bos taurus | cow | 9913 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 100.2 Million SubSNP Count: 293.8 Million Assembly: Bos_taurus_UMD_3.1.1 Data: Search, FTP Genome Data Viewer: Bos_taurus_UMD_3.1.1 |
Last Updated: Dec 16, 2016 Variant Regions: 10.7 Thousand Variant Calls: 105.9 Thousand Assembly: Bos_taurus_UMD_3.1, Bos_taurus_UMD_3.1.1, Btau_4.0, Btau_5.0.1 Data: Search, FTP dbVar Browser: Bos_taurus_UMD_3.1, Bos_taurus_UMD_3.1.1, Btau_4.0, Btau_5.0.1 |
| Brassica napus | rapeseeds | 3708 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 901.5 Thousand SubSNP Count: 914.3 Thousand Assembly: Brassica_napus_assembly_v1.0 Data: Search, FTP Genome Data Viewer: Brassica_napus_assembly_v1.0 |
|
| Brassica oleracea | eudicots | 3712 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 625.8 Thousand SubSNP Count: 625.8 Thousand Assembly: BOL Data: Search, FTP Genome Data Viewer: BOL |
|
| Brassica rapa | field_mustard | 3711 |
Last Updated: Build 145 (Jul 31, 2015) RefSNP Count: 167 SubSNP Count: 197 Assembly: Brapa_1.0 Data: Search, FTP Genome Data Viewer: Brapa_1.0 |
|
| Caenorhabditis elegans | nematode | 6239 |
Last Updated: Build 138 (Apr 25, 2013) RefSNP Count: 192 Thousand SubSNP Count: 308.2 Thousand Assembly: WS195 Data: Search, FTP |
|
| Callithrix jacchus | common_marmoset | 9483 |
Last Updated: Build 142 (Oct 14, 2014) RefSNP Count: 16 Million SubSNP Count: 16 Million Assembly: Callithrix_jacchus-3.2 Data: Search, FTP Genome Data Viewer: Callithrix_jacchus-3.2 |
|
| Canis familiaris | dog | 9615 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 5.9 Million SubSNP Count: 7.4 Million Assembly: CanFam3.1 Data: Search, FTP Genome Data Viewer: CanFam3.1 |
Last Updated: Dec 1, 2016 Variant Regions: 105.2 Thousand Variant Calls: 108.7 Thousand Assembly: CanFam2.0, CanFam3.1 Data: Search, FTP dbVar Browser: CanFam2.0, CanFam3.1 |
| Capra aegagrus | wild_goat | 9923 |
Last Updated: Build 143 (Mar 11, 2015) RefSNP Count: 17.4 Million SubSNP Count: 17.5 Million Assembly: CHIR_1.0 Data: Search, FTP Genome Data Viewer: CHIR_1.0 |
|
| Capra hircus | goat | 9925 |
Last Updated: Build 143 (Mar 11, 2015) RefSNP Count: 37.2 Million SubSNP Count: 55.1 Million Assembly: CHIR_1.0 Data: Search, FTP Genome Data Viewer: CHIR_1.0 |
|
| Capsicum annuum | eudicots | 4072 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 22.8 Thousand SubSNP Count: 23.2 Thousand Assembly: Pepper_Zunla_1_Ref_v1.0 Data: Search, FTP Genome Data Viewer: Pepper_Zunla_1_Ref_v1.0 |
|
| Chlorocebus sabaeus | green_monkey | 60711 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 507.6 Thousand SubSNP Count: 507.6 Thousand Assembly: Chlorocebus_sabeus_1.1 Data: Search, FTP Genome Data Viewer: Chlorocebus_sabeus_1.1 |
Last Updated: Apr 26, 2016 Variant Regions: 556 Variant Calls: 556 Assembly: Chlorocebus_sabeus 1.1 Data: Search, FTP dbVar Browser: Chlorocebus_sabeus 1.1 |
| Cicer arietinum | chickpea | 3827 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 519.1 Thousand SubSNP Count: 873.3 Thousand Assembly: ASM33114v1 Data: Search, FTP Genome Data Viewer: ASM33114v1 |
|
| Ciona intestinalis | squirt | 7719 |
Last Updated: Build 143 (Mar 11, 2015) RefSNP Count: 3.2 Million SubSNP Count: 3.2 Million Assembly: KH Data: Search, FTP Genome Data Viewer: KH |
|
| Clupea harengus | bony_fish | 7950 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 48 SubSNP Count: 48 Assembly: ASM96633v1 Data: Search, FTP Genome Data Viewer: ASM96633v1 |
|
| Coturnix japonica | quail | 93934 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 16.3 Thousand SubSNP Count: 16.9 Thousand Assembly: Coturnix_japonica_2.0 Data: Search, FTP Genome Data Viewer: Coturnix_japonica_2.0 |
|
| Danio rerio | zebrafish | 7955 |
Last Updated: Build 142 (Oct 14, 2014) RefSNP Count: 17.8 Million SubSNP Count: 18.6 Million Assembly: Zv9 Data: Search, FTP Genome Data Viewer: Zv9 |
Last Updated: Apr 26, 2016 Variant Regions: 6.1 Thousand Variant Calls: 31.7 Thousand Assembly: GRCz10, Zv8, Zv9 Data: Search, FTP dbVar Browser: GRCz10, Zv8, Zv9 |
| Daucus carota subsp. sativus | carrot | 79200 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 1.4 Million SubSNP Count: 1.4 Million Assembly: ASM162521v1 Data: Search, FTP Genome Data Viewer: ASM162521v1 |
|
| Drosophila melanogaster | fruit fly | 7227 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 5.6 Million SubSNP Count: 7 Million Assembly: Release_6_plus_ISO1_MT Data: Search, FTP Genome Data Viewer: Release_6_plus_ISO1_MT |
Last Updated: Nov 30, 2016 Variant Regions: 19.8 Thousand Variant Calls: 73.2 Thousand Assembly: Release 4, Release 5, Release 6 plus ISO1 MT Data: Search, FTP dbVar Browser: Release 4, Release 5, Release 6 plus ISO1 MT |
| Elaeis guineensis | oil_palm | 51953 |
Last Updated: Build 145 (Jul 31, 2015) RefSNP Count: 112.4 Thousand SubSNP Count: 200 Thousand Assembly: EG5 Data: Search, FTP Genome Data Viewer: EG5 |
|
| Equus caballus | horse | 9796 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 5.1 Million SubSNP Count: 5.6 Million Assembly: EquCab2.0 Data: Search, FTP Genome Data Viewer: EquCab2.0 |
Last Updated: May 23, 2016 Variant Regions: 193.7 Thousand Variant Calls: 193.9 Thousand Assembly: EquCab2.0 Data: Search, FTP dbVar Browser: EquCab2.0 |
| Felis catus | cat | 9685 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 3.6 Million SubSNP Count: 4.5 Million Assembly: Felis_catus_8.0 Data: Search, FTP Genome Data Viewer: Felis_catus_8.0 |
|
| Ficedula albicollis | Collared flycatcher | 59894 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 38.5 Thousand SubSNP Count: 41.2 Thousand Assembly: FicAlb1.5 Data: Search, FTP Genome Data Viewer: FicAlb1.5 |
|
| Gallus gallus | chicken | 9031 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 21.3 Million SubSNP Count: 57.4 Million Assembly: Gallus_gallus-5.0 Data: Search, FTP Genome Data Viewer: Gallus_gallus-5.0 |
|
| Glycine max | soybean | 3847 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 16.9 Million SubSNP Count: 36.7 Million Assembly: Glycine_max_v2.0 Data: Search, FTP Genome Data Viewer: Glycine_max_v2.0 |
|
| Gorilla gorilla | gorilla | 9593 |
Last Updated: Build 139 (Oct 25, 2013) RefSNP Count: 5 SubSNP Count: 5 Assembly: gorGor3.1 Data: Search, FTP Genome Data Viewer: gorGor3.1 |
Last Updated: Apr 26, 2016 Variant Regions: 7 Variant Calls: 179 Assembly: gorGor3.1 Data: Search, FTP dbVar Browser: gorGor3.1 |
| Gossypium hirsutum | cotton | 3635 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 121.2 Thousand SubSNP Count: 287.4 Thousand Assembly: ASM98774v1 Data: Search, FTP Genome Data Viewer: ASM98774v1 |
|
| Homo sapiens | human | 9606 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 154.2 Million SubSNP Count: 557.9 Million Assembly: GRCh37.p13, GRCh38.p7 Data: Search, FTP Genome Data Viewer: GRCh37.p13, GRCh38.p7 |
Last Updated: Jan 24, 2017 Variant Regions: 5.1 Million Variant Calls: 34.4 Million Assembly: GRCh37, GRCh37.p13, GRCh38, GRCh38.p2, NCBI34, NCBI35, NCBI36 Data: Search, FTP dbVar Browser: GRCh37, GRCh38, NCBI34, NCBI35, NCBI36 Genome Data Viewer: GRCh37, GRCh38 |
| Macaca fascicularis | crab_eating_macaque | 9541 |
Last Updated: Build 145 (Jul 31, 2015) RefSNP Count: 2.1 Million SubSNP Count: 2.1 Million Assembly: Macaca_fascicularis_5.0 Data: Search, FTP Genome Data Viewer: Macaca_fascicularis_5.0 |
|
| Macaca mulatta | rhesus monkey | 9544 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 33.4 Million SubSNP Count: 35.8 Million Assembly: Mmul_8.0.1 Data: Search, FTP Genome Data Viewer: Mmul_8.0.1 |
Last Updated: Sep 21, 2016 Variant Regions: 123 Variant Calls: 214 Assembly: Mmul_051212, Mmul_8.0.1 Data: Search, FTP dbVar Browser: Mmul_051212, Mmul_8.0.1 |
| Malus x domestica | apple | 3750 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 383.6 Thousand SubSNP Count: 488.1 Thousand Assembly: MalDomGD1.0 Data: Search, FTP Genome Data Viewer: MalDomGD1.0 |
|
| Medicago truncatula | barrel medic | 3880 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 29 SubSNP Count: 29 Assembly: MedtrA17_3.5 Data: Search, FTP Genome Data Viewer: MedtrA17_3.5 |
|
| Meleagris gallopavo | turkey | 9103 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 9.3 Thousand SubSNP Count: 9.3 Thousand Assembly: Turkey_5.0 Data: Search, FTP Genome Data Viewer: Turkey_5.0 |
|
| Microtus ochrogaster | prairie_vole | 79684 |
Last Updated: Build 143 (Mar 11, 2015) RefSNP Count: 14.5 Thousand SubSNP Count: 14.7 Thousand Assembly: MicOch1.0 Data: Search, FTP Genome Data Viewer: MicOch1.0 |
|
| Monodelphis domestica | gray short-tailed opossum | 13616 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 1.2 Million SubSNP Count: 1.2 Million Assembly: MonDom5 Data: Search, FTP Genome Data Viewer: MonDom5 |
|
| Mus musculus | mouse | 10090 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 80.4 Million SubSNP Count: 135.7 Million Assembly: GRCm38.p3 Data: Search, FTP Genome Data Viewer: GRCm38.p3 |
Last Updated: Oct 19, 2016 Variant Regions: 792 Thousand Variant Calls: 1.3 Million Assembly: GRCm38, GRCm38.p3, MGSCv34, MGSCv36, MGSCv37 Data: Search, FTP dbVar Browser: GRCm38, MGSCv34, MGSCv36, MGSCv37 |
| Nomascus leucogenys | northern white-cheeked gibbon | 61853 |
Last Updated: Build 145 (Jul 31, 2015) RefSNP Count: 1.2 Million SubSNP Count: 1.2 Million Assembly: Nleu_3.0 Data: Search, FTP Genome Data Viewer: Nleu_3.0 |
|
| Nothobranchius furzeri | turquoise_killifish | 105023 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 321 SubSNP Count: 324 Assembly: Nfu_20140520 Data: Search, FTP Genome Data Viewer: Nfu_20140520 |
|
| Oreochromis niloticus | Nile tilapia | 8128 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 342 SubSNP Count: 342 Assembly: Orenil1.1 Data: Search, FTP Genome Data Viewer: Orenil1.1 |
|
| Ornithorhynchus anatinus | platypus | 9258 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 1.3 Million SubSNP Count: 1.9 Million Assembly: Ornithorhynchus_anatinus_5.0.1 Data: Search, FTP Genome Data Viewer: Ornithorhynchus_anatinus_5.0.1 |
|
| Oryctolagus cuniculus | rabbit | 9986 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 38 SubSNP Count: 41 Assembly: OryCun2.0 Data: Search, FTP Genome Data Viewer: OryCun2.0 |
|
| Oryza sativa | rice | 4530 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 13.2 Million SubSNP Count: 18.7 Million Assembly: IRGSP-1.0 Data: Search, FTP Genome Data Viewer: IRGSP-1.0 |
Last Updated: Sep 21, 2016 Variant Regions: 9.2 Thousand Variant Calls: 113 Thousand Assembly: IRGSP-1.0 Data: Search, FTP dbVar Browser: IRGSP-1.0 |
| Ovis aries | sheep | 9940 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 54 Million SubSNP Count: 100.8 Million Assembly: Oar_v4.0 Data: Search, FTP Genome Data Viewer: Oar_v4.0 |
Last Updated: Apr 26, 2016 Variant Regions: 2 Variant Calls: 2 Assembly: Oar_v3.1, Oar_v4.0 Data: Search, FTP dbVar Browser: Oar_v3.1, Oar_v4.0 |
| Ovis orientalis | red_sheep | 469796 |
Last Updated: Build 143 (Mar 11, 2015) RefSNP Count: 29.3 Million SubSNP Count: 29.5 Million Assembly: Oar_v3.1 Data: Search, FTP Genome Data Viewer: Oar_v3.1 |
|
| Pan troglodytes | chimpanzee | 9598 |
Last Updated: Build 136 (Jan 26, 2012) RefSNP Count: 1.7 Million SubSNP Count: 1.7 Million Assembly: Pan_troglodytes-2.1.4 Data: Search, FTP Genome Data Viewer: Pan_troglodytes-2.1.4 |
Last Updated: Apr 26, 2016 Variant Regions: 1.4 Thousand Variant Calls: 16.8 Thousand Assembly: Pan_troglodytes-2.1.3, Pan_troglodytes-2.1.4 Data: Search, FTP dbVar Browser: Pan_troglodytes-2.1.3, Pan_troglodytes-2.1.4 |
| Parus major | pmajor | 9157 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 7.8 Thousand SubSNP Count: 7.9 Thousand Assembly: Parus_major1.0.3 Data: Search, FTP Genome Data Viewer: Parus_major1.0.3 |
|
| Phoenix dactylifera | date_palm | 42345 |
Last Updated: Build 147 (Apr 14, 2016) RefSNP Count: 3.5 Million SubSNP Count: 3.5 Million Assembly: DPV01 Data: Search, FTP Genome Data Viewer: DPV01 |
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| Pongo abelii | orangutan | 9601 |
Last Updated: Build 136 (Jan 26, 2012) RefSNP Count: 10 Million SubSNP Count: 10.2 Million Assembly: P_pygmaeus_2.0.2 Data: Search, FTP |
Last Updated: Apr 26, 2016 Variant Regions: 3.7 Thousand Variant Calls: 222.7 Thousand Assembly: P_pygmaeus_2.0.2 Data: Search, FTP dbVar Browser: P_pygmaeus_2.0.2 |
| Populus trichocarpa | cottonwood | 3694 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 9.5 Million SubSNP Count: 17.9 Million Assembly: Poptr1_1 Data: Search, FTP Genome Data Viewer: Poptr1_1 |
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| Rattus norvegicus | rat | 10116 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 5.1 Million SubSNP Count: 6.5 Million Assembly: Rnor_6.0 Data: Search, FTP Genome Data Viewer: Rnor_6.0 |
|
| Salmo salar | Atlantic salmon | 8030 |
Last Updated: Build 146 (Nov 24, 2015) RefSNP Count: 1 Million SubSNP Count: 1.4 Million Assembly: ICSASG_v2 Data: Search, FTP Genome Data Viewer: ICSASG_v2 |
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| Solanum lycopersicum | tomato | 4081 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 7.9 Thousand SubSNP Count: 8.1 Thousand Assembly: SL2.50 Data: Search, FTP Genome Data Viewer: SL2.50 |
|
| Sorghum bicolor | sorghum | 4558 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 7.1 Million SubSNP Count: 8.4 Million Assembly: Sorbi1 Data: Search, FTP |
Last Updated: Apr 26, 2016 Variant Regions: 32.2 Thousand Variant Calls: 32.3 Thousand Assembly: Sorbi1 Data: Search, FTP dbVar Browser: Sorbi1 |
| Sus scrofa | pig | 9823 |
Last Updated: Build 145 (Jul 31, 2015) RefSNP Count: 60.4 Million SubSNP Count: 135.5 Million Assembly: Sscrofa10.2 Data: Search, FTP Genome Data Viewer: Sscrofa10.2 |
Last Updated: Dec 28, 2016 Variant Regions: 224 Thousand Variant Calls: 310.9 Thousand Assembly: Sscrofa10.2, Sscrofa3, Sscrofa9 Data: Search, FTP dbVar Browser: Sscrofa10.2, Sscrofa3, Sscrofa9 |
| Taeniopygia guttata | zebra_finch | 59729 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 1.8 Million SubSNP Count: 1.8 Million Assembly: Taeniopygia_guttata-3.2.4 Data: Search, FTP Genome Data Viewer: Taeniopygia_guttata-3.2.4 |
|
| Tribolium castaneum | red_flour_beetle | 7070 |
Last Updated: Build 149 (Nov 7, 2016) RefSNP Count: 172 SubSNP Count: 172 Assembly: Tcas5.2 Data: Search, FTP Genome Data Viewer: Tcas5.2 |
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| Vitis vinifera | grape | 29760 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 470.7 Thousand SubSNP Count: 470.9 Thousand Assembly: 12X Data: Search, FTP Genome Data Viewer: 12X |
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| Zea mays | corn | 4577 |
Last Updated: Build 148 (Jun 24, 2016) RefSNP Count: 54.6 Million SubSNP Count: 72.1 Million Assembly: B73_RefGen_v3 Data: Search, FTP Genome Data Viewer: B73_RefGen_v3 |