- 3D Reconstruction Via Stereoscopy for the Study of Mosquito Swarms
- Dose Response Analysis Pipeline (DRAP)
A web-based application for high-throughput dose response analysis. - Immune Epitope Database and Analysis Resource (IEDB)
- B Cell Epitope Prediction Tools
These tools are intended to predict regions of proteins that are likely to be recognized as epitopes in the context of a B cell response. - T Cell Epitope Prediction Tools
These tools predict IC50 values for peptides binding to specific MHC molecules.
- B Cell Epitope Prediction Tools
- Modeling Immunity for Biodefense
This program brings together immunologists, microbiologists, bioinformaticians, and modelers to develop mathematical models of immunity to infection or vaccination. - Simmune
Simmune is the name of a suite of software tools that guides the user through the multiple hierarchical scales of cellular behavior, facilitating the generation of comprehensive models. It was originally created to simulate immunological phenomena — hence its name, Simmune — but it is applicable to a very broad class of cell biological models. - Systems Approach to Immunology
- Computational Core
Aggregates and integrates data from consortium Cores; constructs pipelines for automated data processing; disseminates consortium data to the scientific community. - Signalling Core
The aim of this investigation is to identify the temporal activation of intracellular signaling proteins in response to TLR activation.
- Computational Core
- Systems Biology for Infectious Diseases
- Systems Biology of Enteropathogens
This program, a multi-institution center, was established to deepen our fundamental understanding of the complex processes of microbes and their interactions with the host.- COBRA Project
Physiochemical constraints to model a biological network. - Omics Datasets
- COBRA Project
- Systems Influenza
- Exon microarray data sets
- SILAC Proteomic Data
- Viral Host protein interactions
The goal of this project is to identify the compendium of host proteins that interact directly with influenza viral proteins.
- Mycobacterium tuberculosis Systems Biology
- CSDeconv
A computational method to locate TF binding from ChIP-seq data using blind deconvolution. - GenomeView
Genome editor and viewer with dynamic visualization of aligned short read sequences. - E-Flux
A method to model metabolic states using whole cell measurements and extend flux balance analysis. - Mycobacterium tuberculosis ChipSeq regulatory binding sites
This page allows you to search for regulatory binding interactions based on ChIP-Seq data.
- CSDeconv
- Systems Virology
- Systems Virology Agilent Microarray datasets
- Proteomics datasets
- Seqbias
Graphical per-position bias correction of quantitative sequence abundance in RNA-Seq experiments - Peptide Abundance Analysis Toolbox (PAAT)
- QC workflow for Proteomics Data: RMD
A statistical program to determine if LC-MS peptide abundance data are statistical outliers.
- Systems Biology of Enteropathogens
Contact Information
For more information on Bioinformatics Systems Biology, email
Bioinformatics and Computational Sciences Branch
Content last reviewed on April 23, 2012