Infectious Diseases Research Resources

• Analytical and Computational Tools
  • EuPathDB BLAST
  • Influenza Research Database (IRD)
    • Align Sequences (MSA)
    • Analyze Sequence Variation (SNP)
    • Annotate Nucleotide Sequences
    • Identify Point Mutations
    • Identify Short Peptides in Influenza Proteins
    • Identify Similar Sequences (BLAST)
    • Infer Phylogenetic Relationships and Generate Trees
    • Metadata-driven Comparative Analysis Tool for Sequences (meta-CATS)
    • Visualize Aligned Sequences
  • Pathosystems Resource Integration Center (PATRIC)
    • BLAST
    • Comparative Pathway Tool
    • MG-RAST Metagenomics Analysis Server
    • Rapid Annotation using Subsystem Technology (RAST)
  • Seattle Structural Genomics Center for Infectious Disease
  • Structural Genomics Centers for Infectious Diseases
  • Virus Pathogen Resource (ViPR)
    • Align Sequences (MSA)
    • Identify Short Peptides in Proteins
    • Identify Similar Sequences (BLAST)
    • Visualize Aligned Sequences
• Databases, Data Sets, and Ontologies
  • EuPathDB
    • Search
    • Sequence Retrieval
  • Influenza Research Database (IRD)
    • 3D Protein Structures
    • Human Isolates with Clinical Metadata
    • Immune Epitope Search
    • Nucleotide Sequence Search
    • PCR Primer Probe Data
    • Phenotypes
    • Sequence Feature Variant Types (beta)
  • Pathosystems Resource Integration Center (PATRIC)
    • Feature Finder
    • Gene Ontology Finder
    • Genomics Finder
    • Host Pathogen Interactions
    • ID Mapping Tool
    • Protein Family Sorter Tool
  • ViPR Search
• Visualization and Modeling Tools
  • Host Pathogen Interactions
  • Virus Pathogen Resource (ViPR)
    • Visualize Aligned Sequences
  • Influenza Research Database (IRD)
    • Visualize Aligned Sequences
    • Infer Phylogenetic Relationships and Generate Trees
  • 3D Reconstruction Via Stereoscopy for the Study of Mosquito Swarms
  • Papillomavirus Episteme (PaVE)

Content last reviewed on June 21, 2012