Released January 24, 2017 00:00 EST
2017, Mammal Research (62) 89-101
Neal Woodman, Robert M. Timm
We describe a new species of small-eared shrew, genus Cryptotis Pomel, 1848 (Eulipotyphla: Soricidae), from near the community of Monteverde in the Tilarán highlands of northwestern Costa Rica. The new species is immediately distinguished from all other Costa Rican shrews its large size and long tail. Morphologically, it belongs to the Cryptotis thomasi group of small-eared shrews, a clade that is more typically distributed in the Andes Cordillera and other highland regions of northern South America. The new Costa Rican species and the Panamanian endemic Cryptotis endersi Setzer, 1950 are the only two members of this species group known to occur in Central America. Like most other members of the C. thomasi group for which the postcranial skeleton has been studied, the new species tends be more ambulatory (rather than semi-fossorial) when compared with other members of the genus. Our survey efforts over several decades failed to locate a population of the new species, and we discuss its conservation status in light of its limited potential distribution in the Tilarán highlands and the significant climatic change that has been documented in the Monteverde region during the past four decades.
Released January 24, 2017 00:00 EST
2017, Journal of Great Lakes Research
Robin L. DeBruyne, David G. Fielder, Edward Roseman, Peter H. Butchko
Stakeholders and fishery managers expressed concern that double-crested cormorant Phalacrocorax auritus predation may be a factor in the recent poor survival of yellow perch Perca flavescens in Saginaw Bay. We quantified cormorant diets from two nesting colonies in Saginaw Bay during April–September in 2013 and 2014, with special emphasis on impacts to yellow perch. Cormorants (n = 691) were collected when returning to colonies after foraging. Stomachs were removed and preserved in the field. Diet items were identified, enumerated, and measured (n = 23.373). Cormorant diets from Saginaw Bay indicate a heavy reliance on round goby and Notropis species as prey during the breeding season, consistent with other areas of the Great Lakes where round goby and cormorants coincide. Respectively, the three most common prey species observed by number (%) and biomass (%) pooled across years and sites were round goby Neogobius melanostomus (56.6%, 42.1%), emerald shiner Notropis antherinoides (25.2%, 12.5%), and yellow perch (8.0%, 14.1%). Diet composition was more variable at Spoils Island than at Little Charity Island. Overall cormorant consumption (estimated using cormorant consumption demand rates) of yellow perch was compared to walleye consumption. Cormorant consumption of age-1 yellow perch was 13–17% as much as mean walleye consumption of yellow perch in 2013 and 8–11% in 2014. The cumulative effects of walleye and spring cormorant predation likely represent a recruitment bottleneck for yellow perch in Saginaw Bay. Future studies determining age-specific abundance of yellow perch would facilitate better determination of cormorant predation significance.
Released January 24, 2017 00:00 EST
2017, Conference Paper, EOS
Andrew D. Richardson, Jake Weltzin, Jeffrey T. Morisette
Climate change is presenting new challenges for natural resource managers charged with maintaining sustainable ecosystems and landscapes. Phenology, a branch of science dealing with seasonal natural phenomena (bird migration or plant flowering in response to weather changes, for example), bridges the gap between the biosphere and the climate system. Phenological processes operate across scales that span orders of magnitude—from leaf to globe and from days to seasons—making phenology ideally suited to multiscale, multiplatform data integration and delivery of information at spatial and temporal scales suitable to inform resource management decisions.
A workshop report: Workshop held June 2016 to investigate opportunities and challenges facing multi-scale, multi-platform integration of phenological data to support natural resource management decision-making.
Released January 24, 2017 00:00 EST
1999, Report
J.W. Beeman, T.C. Robinson, P.V. Haner, S.P. VanderKooi, A.G. Maule
Abstract not available
Released January 23, 2017 11:45 EST
2017, Open-File Report 2016-1171
Michelle C. Moorman, Sharon A. Fitzgerald, Laura N. Gurley, Ahmed Rhoni-Aref, Keith A. Loftin
The Albemarle Sound region was selected in 2012 as one of two demonstration sites in the Nation to test and improve the design of the National Water Quality Monitoring Council’s National Monitoring Network (NMN) for U.S. Coastal Waters and Tributaries. The goal of the NMN for U.S. Coastal Waters and Tributaries is to provide information about the health of our oceans, coastal ecosystems, and inland influences on coastal waters for improved resource management. The NMN is an integrated, multidisciplinary, and multi-organizational program using multiple sources of data and information to augment current monitoring programs.
This report presents and summarizes selected water-quality and bed sediment-quality data collected as part of the demonstration project conducted in two phases. The first phase was an occurrence and distribution study to assess nutrients, metals, pesticides, cyanotoxins, and phytoplankton communities in the Albemarle Sound during the summer of 2012 at 34 sites in Albemarle Sound, nearby sounds, and various tributaries. The second phase consisted of monthly sampling over a year (March 2013 through February 2014) to assess seasonality in a more limited set of constituents including nutrients, cyanotoxins, and phytoplankton communities at a subset (eight) of the sites sampled in the first phase. During the summer of 2012, few constituent concentrations exceeded published water-quality thresholds; however, elevated levels of chlorophyll a and pH were observed in the northern embayments and in Currituck Sound. Chlorophyll a, and metals (copper, iron, and zinc) were detected above a water-quality threshold. The World Health Organization provisional guideline based on cyanobacterial density for high recreational risk was exceeded in approximately 50 percent of water samples collected during the summer of 2012. Cyanobacteria capable of producing toxins were present, but only low levels of cyanotoxins below human health benchmarks were detected. Finally, 12 metals in surficial bed sediments were detected at levels above a published sediment-quality threshold. These metals included chromium, mercury, copper, lead, arsenic, nickel, and cadmium. Sites with several metal concentrations above the respective thresholds had relatively high concentrations of organic carbon or fine sediment (silt plus clay), or both and were predominantly located in the western and northwestern parts of the Albemarle Sound.
Results from the second phase were generally similar to those of the first in that relatively few constituents exceeded a water-quality threshold, both pH and chlorophyll a were detected above the respective water-quality thresholds, and many of these elevated concentrations occurred in the northern embayments and in Currituck Sound. In contrast to the results from phase one, the cyanotoxin, microcystin was detected at more than 10 times the water-quality threshold during a phytoplankton bloom on the Chowan River at Mount Gould, North Carolina in August of 2013. This was the only cyanotoxin concentration measured during the entire study that exceeded a respective water-quality threshold.
The information presented in this report can be used to improve understanding of water-quality conditions in the Albemarle Sound, particularly when evaluating causal and response variables that are indicators of eutrophication. In particular, this information can be used by State agencies to help develop water-quality criteria for nutrients, and to understand factors like cyanotoxins that may affect fisheries and recreation in the Albemarle Sound region.
Released January 23, 2017 00:00 EST
2017, BMC Physiology (17) 1-11
Jason P. Breves, Chelsea K. Fujimoto, Silas K. Phipps-Costin, Ingibjörg E. Einarsdottir, Björn Thrandur Björnsson, Stephen McCormick
Background
In preparation for migration from freshwater to marine habitats, Atlantic salmon (Salmo salar L.) undergo smoltification, a transformation that includes the acquisition of hyposmoregulatory capacity. The growth hormone (Gh)/insulin-like growth-factor (Igf) axis promotes the development of branchial ionoregulatory functions that underlie ion secretion. Igfs interact with a suite of Igf binding proteins (Igfbps) that modulate hormone activity. In Atlantic salmon smolts, igfbp4,−5a,−5b1,−5b2,−6b1 and−6b2 transcripts are highly expressed in gill. We measured mRNA levels of branchial and hepatic igfbps during smoltification (March, April, and May), desmoltification (July) and following seawater (SW) exposure in March and May. We also characterized parallel changes in a broad suite of osmoregulatory (branchial Na+/K+-ATPase (Nka) activity, Na+ /K + /2Cl − cotransporter 1 (nkcc1) and cystic fibrosis transmembrane regulator 1 (cftr1) transcription) and endocrine (plasma Gh and Igf1) parameters.
Results
Indicative of smoltification, we observed increased branchial Nka activity, nkcc1 and cftr1 transcription in May. Branchial igfbp6b1 and -6b2 expression increased coincidentally with smoltification. Following a SW challenge in March, igfbp6b1 showed increased expression while igfbp6b2 exhibited diminished expression. igfbp5a,−5b1 and−5b2 mRNA levels did not change during smolting, but each had lower levels following a SW exposure in March.
Conclusions
Salmonids express an especially large suite of igfbps. Our data suggest that dynamic expression of particular igfbps accompanies smoltification and SW challenges; thus, transcriptional control of igfbps may provide a mechanism for the local modulation of Igf activity in salmon gill.
Released January 23, 2017 00:00 EST
2017, Rangelands
David S. Pilliod, Justin Welty, Gordon R. Toevs
On the Ground
- Land treatments occurring over millions of hectares of public rangelands in the Great Basin over the last 75 years represent one of the largest vegetation manipulation and restoration efforts in the world.
- The ability to use legacy data from land treatments in adaptive management and ecological research has improved with the creation of the Land Treatment Digital Library (LTDL), a spatially explicit database of land treatments conducted by the U.S. Bureau of Land Management.
- The LTDL contains information on over 9,000 confirmed land treatments in the Great Basin, composed of seedings (58%), vegetation control treatments (24%), and other types of vegetation or soil manipulations (18%).
- The potential application of land treatment legacy data for adaptive management or as natural experiments for retrospective analyses of effects of land management actions on physical, hydrologic, and ecologic patterns and processes is considerable and just beginning to be realized.
Released January 23, 2017 00:00 EST
2017, Ecological Applications
J. Ryan Bellmore, Joseph R. Benjamin, Michael Newsom, Jennifer A. Bountry, Daniel Dombroski
Restoration is frequently aimed at the recovery of target species, but also influences the larger food web in which these species participate. Effects of restoration on this broader network of organisms can influence target species both directly and indirectly via changes in energy flow through food webs. To help incorporate these complexities into river restoration planning we constructed a model that links river food web dynamics to in-stream physical habitat and riparian vegetation conditions. We present an application of the model to the Methow River, Washington (USA), a location of on-going restoration aimed at recovering salmon. Three restoration strategies were simulated: riparian vegetation restoration, nutrient augmentation via salmon carcass addition, and side-channel reconnection. We also added populations of nonnative aquatic snails and fish to the modeled food web to explore how changes in food web structure mediate responses to restoration. Simulations suggest that side-channel reconnection may be a better strategy than carcass addition and vegetation planting for improving conditions for salmon in this river segment. However, modeled responses were strongly sensitive to changes in the structure of the food web. The addition of nonnative snails and fish modified pathways of energy through the food web, which negated restoration improvements. This finding illustrates that forecasting responses to restoration may require accounting for the structure of food webs, and that changes in this structure—as might be expected with the spread of invasive species—could compromise restoration outcomes. Unlike habitat-based approaches to restoration assessment that focus on the direct effects of physical habitat conditions on single species of interest, our approach dynamically links the success of target organisms to the success of competitors, predators, and prey. By elucidating the direct and indirect pathways by which restoration affects target species, dynamic food web models can improve restoration planning by fostering a deeper understanding of system connectedness and dynamics.
Released January 23, 2017 00:00 EST
2017, Geochemistry, Geophysics, Geosystems
Ilsa B. Kuffner, Kelsey E. Roberts, Jennifer A. Flannery, Jennifer M. Morrison, Julie Richey
Massive corals provide a useful archive of environmental variability, but careful testing of geochemical proxies in corals is necessary to validate the relationship between each proxy and environmental parameter throughout the full range of conditions experienced by the recording organisms. Here we use samples from a coral-growth study to test the hypothesis that Sr/Ca in the coral Siderastrea siderea accurately records sea-surface temperature (SST) in the subtropics (Florida, USA) along 350 km of reef tract. We test calcification rate, measured via buoyant weight, and linear extension (LE) rate, estimated with Alizarin Red-S staining, as predictors of variance in the Sr/Ca records of 39 individual S. siderea corals grown at four outer-reef locations next to in-situ temperature loggers during two, year-long periods. We found that corals with calcification rates < 1.7 mg cm−2 d−1 or < 1.7 mm yr−1 LE returned spuriously high Sr/Ca values, leading to a cold-bias in Sr/Ca-based SST estimates. The threshold-type response curves suggest that extension rate can be used as a quality-control indicator during sample and drill-path selection when using long cores for SST paleoreconstruction. For our corals that passed this quality control step, the Sr/Ca-SST proxy performed well in estimating mean annual temperature across three sites spanning 350 km of the Florida reef tract. However, there was some evidence that extreme temperature stress in 2010 (cold snap) and 2011 (SST above coral-bleaching threshold) may have caused the corals not to record the temperature extremes. Known stress events could be avoided during modern calibrations of paleoproxies.
Released January 23, 2017 00:00 EST
2017, Energy and Fuels (31) 458-463
Kathryn E. Washburn, Justin E. Birdwell, James E. Howard
From healthcare to cosmetics to environmental science, the specific surface area (SSA) of micro- and mesoporous materials or products can greatly affect their chemical and physical properties. SSA results are also widely used to examine source rocks in conventional and unconventional petroleum resource plays. Despite its importance, current methods to measure SSA are often cumbersome, time-consuming, or require cryogenic consumables (e.g., liquid nitrogen). These methods are not amenable to high-throughput environments, have stringent sample preparation requirements, and are not practical for use in the field. We present a new application of laser-induced breakdown spectroscopy for rapid measurement of SSA. This study evaluates geological samples, specifically organic-rich oil shales, but the approach is expected to be applicable to many other types of materials. The method uses optical emission spectroscopy to examine laser-generated plasma and quantify the amount of argon adsorbed to a sample during an inert gas purge. The technique can accommodate a wide range of sample sizes and geometries and has the potential for field use. These advantages for SSA measurement combined with the simultaneous acquisition of composition information make this a promising new approach for characterizing geologic samples and other materials.
Released January 23, 2017 00:00 EST
2017, Oecologia
Kathryn McAbee, Keith Reinhardt, Matthew Germino, Andrew Bosworth
Semi-arid rangelands are important carbon (C) pools at global scales. However, the degree of net C storage or release in water-limited systems is a function of precipitation amount and timing, as well as plant community composition. In northern latitudes of western North America, C storage in cold-desert ecosystems could increase with boosts in wintertime precipitation, in which climate models predict, due to increases in wintertime soil water storage that enhance summertime productivity. However, there are few long-term, manipulative field-based studies investigating how rangelands will respond to altered precipitation amount or timing. We measured aboveground C pools and fluxes at leaf, soil, and ecosystem scales over a single growing season in plots that had 200 mm of supplemental precipitation added in either winter or summer for the past 21 years, in shrub- and exotic-bunchgrass-dominated garden plots. At our cold-desert site (298 mm precipitation during the study year), we hypothesized that increased winter precipitation would stimulate the aboveground C uptake and storage relative to ambient conditions, especially in plots containing shrubs. Our hypotheses were generally supported: ecosystem C uptake and long-term biomass accumulation were greater in winter- and summer-irrigated plots compared to control plots in both vegetation communities. However, substantial increases in the aboveground biomass occurred only in winter-irrigated plots that contained shrubs. Our findings suggest that increases in winter precipitation will enhance C storage of this widespread ecosystem, and moreso in shrub- compared to grass-dominated communities.
Released January 23, 2017 00:00 EST
2017, General Information Product 171
Amber N. Lounsbery
This general information product lists Web sites related to the Earth Resources Observation and Science (EROS) Center and supersedes GIP 84.
Released January 23, 2017 00:00 EST
2016, Journal of Environmental Radioactivity (165) 144-150
Ching-Chih Chang, George S. Burr, A. J. Timothy Jull, Joellen L. Russell, Dana Biddulph, Lara White, Nancy G. Prouty, Yue-Gau Chen, Chuan-Chou Shen, Weijian Zhou, Doan Dinh Lam
The long-lived radionuclide 129I (half-life: 15.7 × 106 yr) is well-known as a useful environmental tracer. At present, the global 129I in surface water is about 1–2 orders of magnitude higher than pre-1960 levels. Since the 1990s, anthropogenic 129I produced from industrial nuclear fuels reprocessing plants has been the primary source of 129I in marine surface waters of the Atlantic and around the globe. Here we present four coral 129I time series records from: 1) Con Dao and 2) Xisha Islands, the South China Sea, 3) Rabaul, Papua New Guinea and 4) Guam. The Con Dao coral 129I record features a sudden increase in 129I in 1959. The Xisha coral shows similar peak values for 129I as the Con Dao coral, punctuated by distinct low values, likely due to the upwelling in the central South China Sea. The Rabaul coral features much more gradual 129I increases in the 1970s, similar to a published record from the Solomon Islands. The Guam coral 129I record contains the largest measured values for any site, with two large peaks, in 1955 and 1959. Nuclear weapons testing was the primary 129I source in the Western Pacific in the latter part of the 20th Century, notably from testing in the Marshall Islands. The Guam 1955 peak and Con Dao 1959 increases are likely from the 1954 Castle Bravo test, and the Operation Hardtack I test is the most likely source of the 1959 peak observed at Guam. Radiogenic iodine found in coral was carried primarily through surface ocean currents. The coral 129I time series data provide a broad picture of the surface distribution and depth penetration of 129I in the Pacific Ocean over the past 60 years.
Released January 23, 2017 00:00 EST
2016, Scientific Reports (6) 1-13
Lennart Balk, Per-Åke Hägerroth, Hanna Gustavsson, Lisa Sigg, Gun Akerman, Yolanda Ruiz Muñoz, Dale C. Honeyfield, Ulla Tjarnlund, Kenneth Oliveira, Karin Strom, Stephen D. McCormick, Simon Karlsson, Marika Strom, Mathijs van Manen, Anna-Lena Berg, Halldór P. Halldórsson, Jennie Stromquist, Tracy K. Collier, Hans Borjeson, Torsten Morner, Tomas Hansson
Many wildlife populations are declining at rates higher than can be explained by known threats to biodiversity. Recently, thiamine (vitamin B1) deficiency has emerged as a possible contributing cause. Here, thiamine status was systematically investigated in three animal classes: bivalves, ray-finned fishes, and birds. Thiamine diphosphate is required as a cofactor in at least five life-sustaining enzymes that are required for basic cellular metabolism. Analysis of different phosphorylated forms of thiamine, as well as of activities and amount of holoenzyme and apoenzyme forms of thiamine-dependent enzymes, revealed episodically occurring thiamine deficiency in all three animal classes. These biochemical effects were also linked to secondary effects on growth, condition, liver size, blood chemistry and composition, histopathology, swimming behaviour and endurance, parasite infestation, and reproduction. It is unlikely that the thiamine deficiency is caused by impaired phosphorylation within the cells. Rather, the results point towards insufficient amounts of thiamine in the food. By investigating a large geographic area, by extending the focus from lethal to sublethal thiamine deficiency, and by linking biochemical alterations to secondary effects, we demonstrate that the problem of thiamine deficiency is considerably more widespread and severe than previously reported.
Released January 23, 2017 00:00 EST
2016, Journal of Volcanology and Geothermal Research (328) 134-148
H. Elizabeth Gaunt, Benjamin Bernard, Silvana Hidalgo, Antonio Proano, Heather M. Wright, Patricia Mothes, Evelyn Criollo, Ulrich Kueppers
Forecasting future activity and performing hazard assessments during the reactivation of volcanoes remain great challenges for the volcanological community. On August 14, 2015 Cotopaxi volcano erupted for the first time in 73 years after approximately four months of precursory activity, which included an increase in seismicity, gas emissions, and minor ground deformation. Here we discuss the use of near real-time petrological monitoring of ash samples as a complementary aid to geophysical monitoring, in order to infer eruption dynamics and evaluate possible future eruptive activity at Cotopaxi. Twenty ash samples were collected between August 14 and November 23, 2015 from a monitoring site on the west flank of the volcano. These samples contain a range of grain types that we classified as: hydrothermal/altered, lithic, juvenile, and free crystals. The relative proportions of theses grains evolved as the eruption progressed, with increasing amounts of juvenile material and a decrease in hydrothermally altered material. In samples from the initial explosion, juvenile grains are glassy, microlite-poor and contain hydrothermal minerals (opal and alunite). The rising magma came in contact with the hydrothermal system under confinement, causing hydro-magmatic explosions that cleared the upper part of the plumbing system. Subsequently, the magmatic column produced a thermal aureole in the conduit and dried out the hydrothermal system, allowing for dry eruptions. Magma ascent rates were low enough to allow for efficient outgassing and microlite growth. Constant supply of magma from below caused quasi-continuous disruption of the uppermost magma volume through a combination of shear-deformation and gas expansion. The combination of increasing crystallinity of juvenile grains, and high measured SO2 flux indicate decreasing integrated magma ascent rates and clearing of the hydrothermal system along transport pathways in a system open to gas loss. The near real-time monitoring of ash samples combined with traditional geophysical monitoring techniques during the reawakening of Cotopaxi allowed us to gain a much clearer understanding of events than when using traditional geophysical monitoring alone.
Released January 23, 2017 00:00 EST
2016, Geology (44) 1003-1006
Brooks Proctor, David A. Lockner
Solidified frictional melts, or pseudotachylytes, are observed in exhumed faults from across the seismogenic zone. These unique fault rocks, and many experimental studies, suggest that frictional melting can be an important process during earthquakes. However, it remains unknown how melting affects the post-slip strength of the fault and why many exhumed faults do not contain pseudotachylyte. Analyses of triaxial stick-slip events on Westerly Granite (Rhode Island, USA) sawcuts at confining pressures from 50 to 400 MPa show evidence for frictional heating, including some events energetic enough to generate surface melt. Total and partial stress drops were observed with slip as high as 6.5 mm. We find that in dry samples following melt-producing stick slip, the shear failure strength increased as much as 50 MPa, while wet samples had <10 MPa strengthening. Microstructural analysis indicates that the strengthening is caused by welding of the slip surface during melt quenching, suggesting that natural pseudotachylytes may also strengthen faults after earthquakes. These results predict that natural pseudotachylyte will inhibit slip reactivation and possibly generate stress heterogeneities along faults. Wet samples do not exhibit melt welding, possibly because of thermal pressurization of water reducing frictional heating during slip.
Released January 23, 2017 00:00 EST
2016, Botany
Kyle R. Pritchard, Joan Hagar, David C. Shaw
Mistletoes are parasitic or hemi-parasitic flowering plants that parasitize woody plants around the globe. Important food and cover resources provided by mistletoes have been related to strong patterns of positive association between wildlife diversity and mistletoe density. Mistletoes also create microhabitat features known to be important to wildlife by causing deformations in their host trees. However, links between availability of mistletoe-formed microhabitat and wildlife diversity has not been well studied. We investigated this relationship by quantifying microhabitat features and avian abundance and diversity related to infection by Oak Mistletoe (Phoradendron villosum) in Oregon White Oak (Quercus garryana). Q. garryana woodlands support several avian species of conservation concern, so an understanding of the influence of mistletoe on wildlife habitat is critical. Our results suggest that 1) structural heterogeneity within tree crowns; 2) avian species richness and abundance are positively associated with mistletoe load; and 3) P. villosum fruit, available is an important food for western bluebird (Sialia mexicana) and other wildlife in late autumn and early winter. If a goal of restoration is to maintain habitat for oak-associated bird species, managers should consider the retention of some oaks hosting mistletoe.
Released January 20, 2017 15:45 EST
2017, Open-File Report 2016-1195
Joan S. Daniels, Jeanette C. Haegele
Topock Marsh is a 1,637-hectare (4,045-acre) wetland adjacent to the Colorado River near Needles, California, and a main feature of Havasu National Wildlife Refuge (NWR). The U.S. Fish and Wildlife Service, in cooperation with the Bureau of Reclamation, began construction of an infrastructure improvement project in 2010 to increase the efficiency of water use and to help protect the habitats and species found within the Havasu NWR. During construction, normal water delivery from the Colorado River into Topock Marsh through the Inlet Canal was restricted, which resulted in unusually low water elevations in 2011. The U.S. Geological Survey, commissioned by the U.S. Fish and Wildlife Service, undertook the investigation of the water quality and aquatic flora and fauna during the low water conditions. Subsequently, water elevations in the marsh returned to more normal elevations after the new concrete-lined Fire Break Canal became fully operational in January 2012.
The U.S. Geological Survey made 11 field trips to the Havasu NWR between July 2011 and October 2014 to assess the effects of the temporary low water conditions and the change of inflow location (from the Inlet Canal to the Fire Break Canal) on water quality and aquatic habitat. The following conditions were monitored: water quality, sediment and plant chemistry, phytoplankton, zooplankton, aquatic macro-invertebrates, and emergent and submerged aquatic vegetation (SAV). Water-quality and biota data collected during 2013–14 were then compared with data collected during the 2011–12 low water period.
Once the new Fire Break Canal became operational and Colorado River water flowed regularly into the marsh, concentrations of several water quality parameters decreased (for example, specific conductance, total dissolved solids, turbidity, chlorophyll a, and total and organic nitrogen), and phytoplankton abundance was reduced at the upstream sampling stations (TP-3, TP-2, and TP-6); the water flow pushed water with higher concentrations of these components downstream (measured at TP-8). The upstream sampling locations in 2013–14 had decreased turbidity, therefore more SAV biomass accumulated, especially in shallow areas with water depths of ≤1.0 meter (≤3.3 feet). However, the furthest downstream station had higher turbidity caused by both the suspension of autochthonous sediment and high phytoplankton density and biovolume. This higher turbidity resulted in minimal SAV growth, especially in the deeper water (>1.0 meter [>3.3 feet]). Emergent vegetation not only survived the low water conditions of 2011, but expanded its areal coverage and subsequently thrived in the higher water elevations.
Overall, no immediate critically negative consequences were detected for aquatic fauna or flora that could be attributd unequivocally to the effect of low water levels. Concentrations of nutrient and trace elements in all water samples were below wildlife toxicity thresholds as established by Arizona Department of Environmental Quality. Three nonnative species were discovered shortly after the Fire Break Canal went into operation. Of the three, gizzard shad (Dorosoma cepedianum) and Eurasian watermilfoil (Myriophyllum spicatum) increased substantially in numbers from 2011–14, but quagga mussels (Dreissena bugensis) did not increase. Future monitoring will determine the long-term impact of the new flow regime
Released January 20, 2017 14:00 EST
2017, Scientific Investigations Report 2016-5151
C. Amanda Garcia, Tracie R. Jackson, Keith J. Halford, Donald S. Sweetkind, Nancy A. Damar, Joseph M. Fenelon, Steven R. Reiner
An improved understanding of groundwater flow and radionuclide migration downgradient from underground nuclear-testing areas at Pahute Mesa, Nevada National Security Site, requires accurate subsurface hydraulic characterization. To improve conceptual models of flow and transport in the complex hydrogeologic system beneath Pahute Mesa, the U.S. Geological Survey characterized bulk hydraulic properties of volcanic rocks using an integrated analysis of 16 multiple-well aquifer tests. Single-well aquifer-test analyses provided transmissivity estimates at pumped wells. Transmissivity estimates ranged from less than 1 to about 100,000 square feet per day in Pahute Mesa and the vicinity. Drawdown from multiple-well aquifer testing was estimated and distinguished from natural fluctuations in more than 200 pumping and observation wells using analytical water-level models. Drawdown was detected at distances greater than 3 miles from pumping wells and propagated across hydrostratigraphic units and major structures, indicating that neither faults nor structural blocks noticeably impede or divert groundwater flow in the study area.
Consistent hydraulic properties were estimated by simultaneously interpreting drawdown from the 16 multiple-well aquifer tests with an integrated groundwater-flow model composed of 11 well-site models—1 for each aquifer test site. Hydraulic properties were distributed across volcanic rocks with the Phase II Pahute Mesa-Oasis Valley Hydrostratigraphic Framework Model. Estimated hydraulic-conductivity distributions spanned more than two orders of magnitude in hydrostratigraphic units. Overlapping hydraulic conductivity ranges among units indicated that most Phase II Hydrostratigraphic Framework Model units were not hydraulically distinct. Simulated total transmissivity ranged from 1,600 to 68,000 square feet per day for all pumping wells analyzed. High-transmissivity zones exceeding 10,000 square feet per day exist near caldera margins and extend along the northern and eastern Pahute Mesa study area and near the southwestern edge of the study area. The estimated hydraulic-property distributions and observed hydraulic connections among geologic structures improved the characterization and representation of groundwater flow at Pahute Mesa.
Released January 20, 2017 00:00 EST
2017, Procedia Earth and Planetary Science (17) 610-613
JoAnn M. Holloway, Michael Pribil, R. Blaine McCleskey, Alexandra B. Etheridge, David P. Krabbenhoft, George R. Aiken
The Cinnabar and Fern mine sites in central Idaho are primary source areas for elevated mercury and arsenic entering the South
Fork of the Salmon River, which provides critical spawning habitat for bull trout and Chinook salmon. Mercury mineralization is
hosted by carbonate rocks, which generate waters dominated by Ca2+ and HCO3
- at pH 7 to 9. A synoptic sampling was
conducted on headwater tributaries to determine geologic background concentrations and quantify trace metal concentrations in
stream water associated with historical mining. Geologic background concentrations in unfiltered Cinnabar Creek water were 8 -
14 ng Hg L-1 and 4.8 - 9.5 µg As L-1. Immediately downstream from the mine site, concentrations increased to 257 ng Hg L-1
and 20.6 µg As L-1. Groundwater inflow diluted these concentrations by approximately half before the confluence of Cinnabar
Creek with Sugar Creek. As expected, mercury and arsenic concentrations increased downstream in Sugar Creek below the
confluence with Cinnabar Creek. However, the final downstream reach on Sugar Creek showed an increase in unfiltered
mercury, methylmercury, and iron concentrations relative to the upstream reach. This increase is associated with historical
mining activity in a mineralized area of carbonate rock that intersects the reach.
Released January 19, 2017 15:00 EST
2017, Open-File Report 2016-1204
Brian A. Varela, Seth S. Haines, Nicholas J. Gianoutsos
Petroleum production data are usually stored in a format that makes it easy to determine the year and month production started, if there are any breaks, and when production ends. However, in some cases, you may want to compare production runs where the start of production for all wells starts at month one regardless of the year the wells started producing. This report describes the JAVA program the U.S. Geological Survey developed to examine water-to-oil and water-to-gas ratios in the form of month 1, month 2, and so on with the objective of estimating quantities of water and proppant used in low-permeability petroleum production. The text covers the data used by the program, the challenges with production data, the program logic for checking the quality of the production data, and the program logic for checking the completeness of the data.
Released January 19, 2017 14:00 EST
2017, Scientific Investigations Report 2016-5150
Wayne R. Belcher, Donald S. Sweetkind, Claudia C. Faunt, Michael T. Pavelko, Mary C. Hill
Since the original publication of the Death Valley regional groundwater flow system (DVRFS) numerical model in 2004, more information on the regional groundwater flow system in the form of new data and interpretations has been compiled. Cooperators such as the Bureau of Land Management, National Park Service, U.S. Fish and Wildlife Service, the Department of Energy, and Nye County, Nevada, recognized a need to update the existing regional numerical model to maintain its viability as a groundwater management tool for regional stakeholders. The existing DVRFS numerical flow model was converted to MODFLOW-2005, updated with the latest available data, and recalibrated. Five main data sets were revised: (1) recharge from precipitation varying in time and space, (2) pumping data, (3) water-level observations, (4) an updated regional potentiometric map, and (5) a revision to the digital hydrogeologic framework model.
The resulting DVRFS version 2.0 (v. 2.0) numerical flow model simulates groundwater flow conditions for the Death Valley region from 1913 to 2003 to correspond to the time frame for the most recently published (2008) water-use data. The DVRFS v 2.0 model was calibrated by using the Tikhonov regularization functionality in the parameter estimation and predictive uncertainty software PEST. In order to assess the accuracy of the numerical flow model in simulating regional flow, the fit of simulated to target values (consisting of hydraulic heads and flows, including evapotranspiration and spring discharge, flow across the model boundary, and interbasin flow; the regional water budget; values of parameter estimates; and sensitivities) was evaluated. This evaluation showed that DVRFS v. 2.0 simulates conditions similar to DVRFS v. 1.0. Comparisons of the target values with simulated values also indicate that they match reasonably well and in some cases (boundary flows and discharge) significantly better than in DVRFS v. 1.0.
Released January 19, 2017 08:00 EST
2016, Fact Sheet 2016-3080
MaryLynn Musgrove, Kenneth Belitz
Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Basin and Range basin-fill aquifers constitute one of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 20 percent of the study area and at moderate concentrations in about 49 percent. Organic constituents were not detected at high concentrations in the study area. One or more organic constituents with human-health benchmarks were detected at moderate concentrations in about 3 percent of the study area.
Released January 19, 2017 08:00 EST
2016, Fact Sheet 2016-3078
Bruce Lindsey, Kenneth Belitz
Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Northern Atlantic Coastal Plain aquifer system constitutes one of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 15 percent of the study area and at moderate concentrations in about 17 percent. Organic constituents were not detected at high concentrations in the study area.
Released January 19, 2017 08:00 EST
2016, Fact Sheet 2016-3079
Bruce Lindsey, Kenneth Belitz
Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Valley and Ridge and Piedmont and Blue Ridge carbonate-rock aquifers constitute two of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 15 percent of the study area and at moderate concentrations in about 17 percent. Organic constituents were not detected at high concentrations in the study area. One or more organic constituents with human-health benchmarks were detected at moderate concentrations in about 2 percent of the study area.
Released January 19, 2017 08:00 EST
2016, Fact Sheet 2016-3076
Jeannie Barlow, Bruce Lindsey, Kenneth Belitz
Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Southeastern Coastal Plain aquifer system constitutes one of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 6 percent of the study area and at moderate concentrations in about 13 percent. One or more organic constituents with human-health benchmarks were detected at moderate concentrations in about 3 percent of the study area.
Released January 19, 2017 08:00 EST
2016, Fact Sheet 2016-3077
Jeannie R.B. Barlow, Kenneth Belitz
Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Coastal Lowlands aquifer system constitutes one of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 12 percent of the study area and at moderate concentrations in about 18 percent. Organic constituents were not detected at high or moderate concentrations in the study area.
Released January 19, 2017 00:00 EST
2017, Science of the Total Environment (579) 579-587
Bruce Lindsey, Joseph Ayotte, Bryant Jurgens, Leslie Desimone
Temporal changes in methyl tert-butyl ether (MtBE) concentrations in groundwater were evaluated in the northeastern United States, an area of the nation with widespread low-level detections of MtBE based on a national survey of wells selected to represent ambient conditions. MtBE use in the U.S. peaked in 1999 and was largely discontinued by 2007. Six well networks, each representing specific areas and well types (monitoring or supply wells), were each sampled at 10 year intervals between 1996 and 2012. Concentrations were decreasing or unchanged in most wells as of 2012, with the exception of a small number of wells where concentrations continue to increase. Statistically significant increasing concentrations were found in one network sampled for the second time shortly after the peak of MtBE use, and decreasing concentrations were found in two networks sampled for the second time about 10 years after the peak of MtBE use. Simulated concentrations from convolutions of estimates for concentrations of MtBE in recharge water with age distributions from environmental tracer data correctly predicted the direction of MtBE concentration changes in about 65 percent of individual wells. The best matches between simulated and observed concentrations were found when simulating recharge concentrations that followed the pattern of national MtBE use. Some observations were matched better when recharge was modeled as a plume moving past the well from a spill at one point in time. Modeling and sample results showed that wells with young median ages and narrow age distributions responded more quickly to changes in the contaminant source than wells with older median ages and broad age distributions. Well depth and aquifer type affect these responses. Regardless of the timing of decontamination, all of these aquifers show high susceptibility for contamination by a highly soluble, persistent constituent.
Released January 19, 2017 00:00 EST
2017, The Condor (119) 44-57
Michele R. Crist, Steven T. Knick, Steven E. Hanser
The delineation of priority areas in western North America for managing Greater Sage-Grouse (Centrocercus urophasianus) represents a broad-scale experiment in conservation biology. The strategy of limiting spatial disturbance and focusing conservation actions within delineated areas may benefit the greatest proportion of Greater Sage-Grouse. However, land use under normal restrictions outside priority areas potentially limits dispersal and gene flow, which can isolate priority areas and lead to spatially disjunct populations. We used graph theory, representing priority areas as spatially distributed nodes interconnected by movement corridors, to understand the capacity of priority areas to function as connected networks in the Bi-State, Central, and Washington regions of the Greater Sage-Grouse range. The Bi-State and Central networks were highly centralized; the dominant pathways and shortest linkages primarily connected a small number of large and centrally located priority areas. These priority areas are likely strongholds for Greater Sage-Grouse populations and might also function as refugia and sources. Priority areas in the Central network were more connected than those in the Bi-State and Washington networks. Almost 90% of the priority areas in the Central network had ≥2 pathways to other priority areas when movement through the landscape was set at an upper threshold (effective resistance, ER12). At a lower threshold (ER4), 83 of 123 priority areas in the Central network were clustered in 9 interconnected subgroups. The current conservation strategy has risks; 45 of 61 priority areas in the Bi-State network, 68 of 123 in the Central network, and all 4 priority areas in the Washington network had ≤1 connection to another priority area at the lower ER4threshold. Priority areas with few linkages also averaged greater environmental resistance to movement along connecting pathways. Without maintaining corridors to larger priority areas or a clustered group, isolation of small priority areas could lead to regional loss of Greater Sage-Grouse
Released January 19, 2017 00:00 EST
2017, Procedia Earth and Planetary Science (17) 241-244
Yousif K. Kharaka, James J. Thordsen, Atosa A. Abedini, Sarah Beers, Burt Thomas
As part of the ZERT program, sediments from two wells at the ZERT site, located in Bozeman, Montana, USA were reacted with a solution having the composition of local groundwater. A total of 50 water samples were collected from 7 containers placed for 15 days in a glove box with one atmosphere of CO2 to investigate detailed changes in the concentrations of major, minor and trace inorganic compounds, and to compare these with changes observed in groundwater at the ZERT site following CO2 injection. Laboratory results included rapid changes in pH (8.6 to 5.7), alkalinity (243 to 1295 mg/L as HCO3), electrical conductance (539 to 1822 μS/cm), Ca (28 to 297 mg/L), Mg (18 to 63 mg/L), Fe (5 to 43 μg/L) and Mn (2 to 837 μg/L) following CO2 injection. These chemical changes, which are in general agreement with those obtained from sampling the ZERT monitoring wells, could provide early detection of CO2 leakage into shallow groundwater. Dissolution of calcite, some dolomite and minor Mn-oxides, and desorption/ion exchange are likely the main geochemical processes responsible for the observed changes.
Released January 19, 2017 00:00 EST
2017, PLoS ONE (12)
Elliott L. Matchett, Joseph Fleskes
The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006–2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the “existing” landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional conservation and climate change adaptation strategies may be warranted to maintain habitat adequate to support waterbirds in the Central Valley.
Released January 19, 2017 00:00 EST
2017, Journal of Geophysical Research F: Earth Surface
Laura V. Alvarez, Mark W. Schmeeckle, Paul E. Grams
Lateral flow separation occurs in rivers where banks exhibit strong curvature. In canyon-boundrivers, lateral recirculation zones are the principal storage of fine-sediment deposits. A parallelized,three-dimensional, turbulence-resolving model was developed to study the flow structures along lateralseparation zones located in two pools along the Colorado River in Marble Canyon. The model employs thedetached eddy simulation (DES) technique, which resolves turbulence structures larger than the grid spacingin the interior of the flow. The DES-3D model is validated using Acoustic Doppler Current Profiler flowmeasurements taken during the 2008 controlled flood release from Glen Canyon Dam. A point-to-pointvalidation using a number of skill metrics, often employed in hydrological research, is proposed here forfluvial modeling. The validation results show predictive capabilities of the DES model. The model reproducesthe pattern and magnitude of the velocity in the lateral recirculation zone, including the size and position ofthe primary and secondary eddy cells, and return current. The lateral recirculation zone is open, havingcontinuous import of fluid upstream of the point of reattachment and export by the recirculation returncurrent downstream of the point of separation. Differences in magnitude and direction of near-bed andnear-surface velocity vectors are found, resulting in an inward vertical spiral. Interaction between therecirculation return current and the main flow is dynamic, with large temporal changes in flow direction andmagnitude. Turbulence structures with a predominately vertical axis of vorticity are observed in the shearlayer becoming three-dimensional without preferred orientation downstream.
Released January 19, 2017 00:00 EST
2017, Open-File Report 2017-1005
Douglas A. Barnum, Timothy Bradley, Michael Cohen, Bruce Wilcox, Gregor Yanega
Introduction
The Salton Sea (Sea) is an ecosystem facing large systemic changes in the near future. Managers and stakeholders are seeking solutions to the decline of the Sea and have turned to the scientific community for answers. In response, scientists gathered in Irvine, California, to review existing science and propose scientific studies and monitoring needs required for understanding how to retain the Sea as a functional ecosystem. This document summarizes the proceedings of this gathering of approximately 50 scientists at a September 8–10, 2014, workshop on the State of the Salton Sea.
Released January 19, 2017 00:00 EST
2017, Open-File Report 2016-1207
Sarah K. Carter, Natasha B. Carr, Kevin H. Miller, David J.A. Wood, editor(s)
The Bureau of Land Management (BLM) is implementing a landscape approach to resource management (hereafter, landscape approach) to more effectively work with partners and understand the effects of management decisions. A landscape approach is a set of concepts and principles used to guide resource management when multiple stakeholders are involved and goals include diverse and sustainable social, environmental, and economic outcomes. Core principles of a landscape approach include seeking meaningful participation of diverse stakeholders, considering diverse resource values in multifunctional landscapes, acknowledging the tradeoffs needed to meet diverse objectives in the context of sustainable resource management, and addressing the complexity of social and ecological processes by embracing interdisciplinarity and considering multiple and broad spatial and temporal perspectives.
In chapter 1, we outline the overall goal of this report: to provide a conceptual foundation and framework for implementing a landscape approach to resource management in the BLM, focusing on the role of multiscale natural resource monitoring and assessment information. In chapter 2, we describe a landscape approach to resource management. BLM actions taken to implement a landscape approach include a major effort to compile broad-scale data on natural resource status and condition across much of the west. These broadscale data now provide a regional context for interpreting monitoring data collected at individual sites and informing decisions made for local projects. We also illustrate the utility of using multiscale data to understand potential effects of different resource management decisions, define relevant terms in landscape ecology, and identify spatial scales at which planning and management decisions may be evaluated.
In chapter 3, we describe how the BLM Rapid Ecoregional Assessment program and Assessment, Inventory and Monitoring program may be integrated to provide the multiscale monitoring data needed to inform a landscape approach. We propose six core, broad-scale indicators of natural resource status and condition: the amount, spatial distribution, patch size and connectivity of ecosystems and wildlife habitats, and the pattern of existing development across the landscape. Additional supplemental broad-scale indicators may include fire return intervals, distributions of invasive species, and vulnerability of ecosystems to a changing climate. Landscape intactness is an additional derived indicator that is calculated from one or more of the core and supplemental broad-scale indicators. We then outline a process for assessing broad-scale indicators that is consistent with the overall BLM Assessment, Inventory, and Monitoring process, facilitating development of a multiscale natural resource monitoring program. Finally, we describe how broad-scale indicators of natural resource status and condition may guide field monitoring implemented through the BLM Assessment, Inventory and Monitoring program and help address complex management questions.
In chapter 4, we consider the specific question of assessing the ecological integrity of rangelands across the western United States. We first define ecological integrity and its relation to land health. We then suggest that a combination of six local-scale indicators collected through field sampling at individual sites and five complementary broad-scale indicators together provide information on the composition, structure, and function of rangelands. The terrestrial monitoring indicators collected at the level of individual field sites are the amount of bare ground, vegetation composition (including invasive plants and plants of management concern), vegetation height, and the proportion of the soil surface in large intercanopy gaps. The broad-scale indicators are vegetation amount, distribution, patch size, connectivity, and productivity, along with the pattern of terrestrial development. Our suggested approach to quantifying ecological integrity focuses specifically on informing management of public lands for multiple resource uses, and illustrates how existing data collected through BLM monitoring and assessment programs may be used together to provide multiscale information on land condition across broad extents.
In chapter 5, we develop a method for quantifying landscape intactness and apply this method to the western United States. Our multiscale index of landscape intactness is designed to be defensible, decomposable, and easy to understand. The foundation of the multiscale index of landscape intactness is the surface disturbance footprint of anthropogenic development, including energy and urban development, roads and railroads, cultivated croplands, surface mines and quarries, and energy transmission lines and pipelines. The index represents a gradient of anthropogenic influence as represented by development summarized at two spatial scales of analysis: 2.5 and 20 kilometers. We provide several example applications of the index, illustrating how these data may inform natural resource decisions at the spatial extent of BLM field and district offices, states, ecoregions, and the western United States. We find that 19.2 percent of lands managed by the BLM across the 17 western states of the conterminous United States had the highest landscape intactness. The largest intact areas occur on public lands at high elevations or in the Great Basin.
We believe the frameworks, processes, and analyses provided in this report will improve the ability of the BLM to identify and evaluate potential direct and indirect effects of management actions (such as habitat restoration and renewable energy development), and assist the BLM in further implementing a landscape approach to resource management.
Released January 19, 2017 00:00 EST
2017, Open-File Report 2016-1201
Kent A. Dodge, Michelle I. Hornberger, Matthew A. Turner
Water, bed sediment, and biota were sampled in selected streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork Basin of western Montana. The sampling program was led by the U.S. Geological Survey, in cooperation with the U.S. Environmental Protection Agency, to characterize aquatic resources in the Clark Fork Basin, with emphasis on trace elements associated with historic mining and smelting activities. Sampling sites were located on the Clark Fork and selected tributaries. Water samples were collected periodically at 20 sites from October 2014 through September 2015. Bed-sediment and biota samples were collected once at 13 sites during August 2015.
This report presents the analytical results and quality-assurance data for water-quality, bed-sediment, and biota samples collected at sites from October 2014 through September 2015. Water-quality data include concentrations of selected major ions, trace elements, and suspended sediment. At 12 sites, samples for analysis of dissolved organic carbon and turbidity were collected. In addition, samples for analysis of nitrogen (nitrate plus nitrite) were collected at two sites. Daily values of mean suspended-sediment concentration and suspended-sediment discharge were determined for three sites. Seasonal daily values of turbidity were determined for four sites. Bed-sediment data include trace-element concentrations in the fine-grained fraction. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Statistical summaries of water-quality, bed-sediment, and biological data for sites in the upper Clark Fork Basin are provided for the period of record.
Released January 19, 2017 00:00 EST
2017, Open-File Report 2016-1173
Kristen L. Manies, Christopher C. Fuller, Miriam C. Jones, Mark P. Waldrop, John P. McGeehin
Peatlands play an important role in boreal ecosystems, storing a large amount of soil organic carbon. In northern ecosystems, collapse-scar bogs (also known as thermokarst bogs) often form as the result of ground subsidence following permafrost thaw. To examine how ecosystem carbon balance changes with the loss of permafrost, we measured carbon and nitrogen storage within a thermokarst bog and the surrounding forest, which continues to have permafrost. These sites are a part of the Bonanza Creek Long Term Ecological Research (LTER) site and are located within Interior Alaska. Here, we report on methods used for core collection analysis as well as the cores’ physical, chemical, and descriptive properties.
Released January 19, 2017 00:00 EST
2003, Report, Assess current and potential salmonid production in Rattlesnake Creek associated with restoration efforts 2002
I.G. Jezorek, P.J. Connolly
Abstract not available
Released January 18, 2017 17:15 EST
2017, Scientific Investigations Report 2015-5105
E. Randall Bayless, Leslie D. Arihood, Howard W. Reeves, Benjamin J.S. Sperl, Sharon L. Qi, Valerie E. Stipe, Aubrey R. Bunch
As part of the National Water Availability and Use Program established by the U.S. Geological Survey (USGS) in 2005, this study took advantage of about 14 million records from State-managed collections of water-well drillers’ records and created a database of hydrogeologic properties for the glaciated United States. The water-well drillers’ records were standardized to be relatively complete and error-free and to provide consistent variables and naming conventions that span all State boundaries.
Maps and geospatial grids were developed for (1) total thickness of glacial deposits, (2) total thickness of coarse-grained deposits, (3) specific-capacity based transmissivity and hydraulic conductivity, and (4) texture-based estimated equivalent horizontal and vertical hydraulic conductivity and transmissivity. The information included in these maps and grids is required for most assessments of groundwater availability, in addition to having applications to studies of groundwater flow and transport. The texture-based estimated equivalent horizontal and vertical hydraulic conductivity and transmissivity were based on an assumed range of hydraulic conductivity values for coarse- and fine-grained deposits and should only be used with complete awareness of the methods used to create them. However, the maps and grids of texture-based estimated equivalent hydraulic conductivity and transmissivity may be useful for application to areas where a range of measured values is available for re-scaling.
Maps of hydrogeologic information for some States are presented as examples in this report but maps and grids for all States are available electronically at the project Web site (USGS Glacial Aquifer System Groundwater Availability Study, http://mi.water.usgs.gov/projects/WaterSmart/Map-SIR2015-5105.html) and the Science Base Web site, https://www.sciencebase.gov/catalog/item/58756c7ee4b0a829a3276352.
Released January 18, 2017 16:45 EST
2016, Circular 1422
Matthew C. Perry, editor(s)
This report, based on a symposium held on October 13, 2011, at the National Wildlife Visitor Center at the Patuxent Research Refuge in Laurel, MD, documents the history of the Patuxent Research Refuge and the Patuxent Wildlife Research Center, collectively known as Patuxent. The symposium was one of the many activities occurring at that time to celebrate the 75th anniversary of the creation of the Patuxent Research Refuge in 1936. The Patuxent Wildlife Research Center is located at the refuge, and the research center director, Dr. Gregory J. Smith, with great enthusiasm, personally supervised all aspects of the celebration. The symposium was coordinated by Dr. Matthew C. Perry, the editor of this report, with Dr. Smith’s strong support. The refuge and the research center have been essentially synonymous for the almost 80 years of their history.
Released January 18, 2017 15:00 EST
2017, Open-File Report 2017-1006
Scott P. Vanderkooi, Theodore A. Kennedy, David J. Topping, Paul E. Grams, David L. Ward, Helen C. Fairley, Lucas S. Bair, Charles B. Yackulic, John C. Schmidt, Joel B. Sankey
Introduction
The purpose of this document is to describe a strategy by which monitoring and research data in the natural and social sciences will be collected, analyzed, and provided to the U.S. Department of the Interior (DOI), its bureaus, and to the Glen Canyon Dam Adaptive Management Program (GCDAMP) in support of implementation of the Glen Canyon Dam Long-Term Experimental and Management Plan (LTEMP) (U.S. Department of the Interior, 2016a). The selected alternative identified in the LTEMP Record of Decision (ROD) (U.S. Department of the Interior, 2016b) describes various data collection, analysis, modeling, and interpretation efforts to be conducted by the U.S. Geological Survey’s (USGS) Grand Canyon Monitoring and Research Center (GCMRC), partner agencies, and cooperators that will inform decisions about operations of Glen Canyon Dam and management of downstream resources between 2017 and 2037, the performance period of the LTEMP. General data collection, analysis, modeling, and interpretation activities are described in this science plan, whereas specific monitoring and research activities and detailed study plans are to be described in the GCDAMP’s triennial work plans (TWPs) to be developed by the Bureau of Reclamation and GCMRC with input from partner agencies and cooperators during the LTEMP period, which are to be reviewed and recommended by the GCDAMP and approved by the Secretary of the Interior.
The GCDAMP consists of several components, the primary committee being the Adaptive Management Work Group (AMWG). This Federal advisory committee is composed of 25 agencies and stakeholder groups and is chaired by the Secretary of the Interior’s designee. The AMWG makes recommendations to the Secretary of the Interior concerning operations of Glen Canyon Dam and other experimental management actions that are intended to fulfill some obligations of the Grand Canyon Protection Act of 1992. The Technical Work Group (TWG) is a subcommittee of the AMWG and provides technical advice to the AMWG. It is composed of technical and science representatives from the same agencies and stakeholder groups who serve on the AMWG. GCMRC is the primary science provider to the GCDAMP and also coordinates many aspects of the science performed by cooperators and partner agencies. The Science Advisors Program provides independent science reviews and advice at the request of the GCDAMP.
The plan proposed here necessarily depends on (1) the protocol for decision-making and the requirements for scientific data reporting described in the LTEMP ROD, (2) the priorities of the GCDAMP as directed by the LTEMP ROD (see Department of the Interior, 2016b, section 6.1), (3) the priorities for monitoring and research in the conservation measures section of the Biological Opinion for the LTEMP (U.S. Department of the Interior, 2016b, LTEMP ROD attachment E), (4) the priorities for resource management and information needs established by Federal and State resource-management agencies within the GCDAMP, (5) scientific understanding about the linkage between the status of those resources and operations of Glen Canyon Dam, and (6) the need to resolve existing scientific uncertainties about the linkage between dam operations and the condition of resources. We note that resource-management prioritization is fundamentally a policy decision charged specifically to DOI for the Colorado River in Glen and Grand Canyons, as outlined most recently in the LTEMP ROD, and is not the responsibility of the GCMRC. However, it is the responsibility of the GCMRC to describe the nature of scientific understanding, the nature of scientific uncertainty, and the risk of making resourcemanagement decisions in the face of existing scientific uncertainty. The goals of science activities in the next 20 years are to inform operational decisions regarding Glen Canyon Dam operations described in the LTEMP ROD, resolve remaining scientific uncertainties, and to monitor resource trends that are affected entirely, or in part, by dam operations.
Released January 18, 2017 13:00 EST
2017, Fact Sheet 2017-3001
Miranda S. Fram
Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. The shallow aquifers of the Tulare, Kaweah, and Tule groundwater basins and adjacent highlands areas of the southern San Joaquin Valley constitute one of the study units being evaluated.
Released January 18, 2017 13:00 EST
2017, Open-File Report 2016-1196
Larry J. Sugarbaker, Diane F. Eldridge, Allyson L. Jason, Vicki Lukas, David L. Saghy, Jason M. Stoker, Diana R. Thunen
The 3D Elevation Program (3DEP) is a cooperative activity to collect light detection and ranging (lidar) data for the conterminous United States, Hawaii, and U.S. territories; and interferometric synthetic aperture radar (IfSAR) elevation data for Alaska during an 8-year period. The U.S. Geological Survey (USGS) and partner organizations acquire high-quality three-dimensional elevation data for the United States and its territories that support requirements beyond what could be realized if agencies independently pursued lidar and IfSAR data collection activities. Data collection rates have been increasing as a growing number of State and Federal agencies participate in cooperative data acquisition projects. USGS and partner agencies expanded data collection, completed the initial product delivery systems and implemented changes to the program governance to include a restructuring of the 3DEP working group and formalizing the relationship to the Federal Geographic Data Committee during the final year (2015) of program preparation.
Released January 18, 2017 00:00 EST
2017, Journal of Fish and Wildlife Management
James H. Johnson, Marc Chalupnicki, Ross Abbett, Avriel R Diaz, Christopher C Nack
Fish feeding ecology has been shown to vary over a 24-h period in terms of the prey consumed and feeding intensity. Consequently, in order to best determine the interspecific feeding associations within a fish community, examination of the diet at multiple times over a 24-h period is often necessary. We examined the diel feeding ecology of three fish species that were numerically dominant in a Lake Ontario embayment during summer. The diet of each of the three species, subyearling pumpkinseed Lepomis gibbosus, golden shiner Notemigonus crysoleucus, and brook silverside Labidesthes sicculus, was distinct with no significant overlap in diet composition occurring within any of the 4-h time intervals. The diet composition of each species suggested that brook silverside were feeding at the surface (terrestrial invertebrates and aquatic surface dwelling hemipterans) whereas subyearling pumpkinseed (amphipods) and golden shiner (tipulids) were feeding on different benthic prey. Differences in feeding periodicity were most pronounced for subyearling pumpkinseed. Our findings provide valuable insights on interspecific feeding associations among these three fish species during summer in a Lake Ontario embayment.
Released January 18, 2017 00:00 EST
2017, Journal of Applied Ichthyology (33) 108-115
Pureviin Tsogtsaikhan, Budiin Mendsaikhan, Ganzorigiin Jargalmaa, Batsaikhanii Ganzorig, Brian C. Weidel, Christopher Filosa, Christopher Free, Talia Young, Olaf P. Jensen
Despite concern over the conservation status of many Mongolian salmonids and the importance of their ecological role in Mongolia's aquatic ecosystems, little is known about their basic biology. Hovsgol grayling (Thymallus nigrescens) is endemic to Lake Hovsgol, Mongolia and listed as endangered on the Mongolian Red List. Baikal grayling (T. baicalensis) and lenok (Brachymystax lenok) are found in lakes and rivers throughout the Selenge drainage. A detailed study of the age and growth of these three salmonids was conducted based on 1,682 samples collected from July 2006 to July 2013 in Lake Hovsgol, its outlet the Eg River, and one of the Eg's largest tributaries, the Uur River. Our results suggest that Hovsgol grayling in particular can reach a much older maximum age (17 years in our samples) than previously believed based on aging from scales. Female Hovsgol grayling were heavier at a given length than their male counterparts. Lenok had a greater average length-at-age in Lake Hovsgol compared to the rivers and greater weight-at-length in the warmer Uur River than in the Eg; female lenok from the rivers had a greater average length-at-age than their male counterparts. This study provides critical new information for the management and conservation of these threatened salmonid species in Mongolia.
Released January 18, 2017 00:00 EST
2017, Quaternary International
John A. Barron, John D. Bukry, Linda E. Heusser, Jason A. Addison, Clark R. Alexander Jr.
Piston core TN062-O550, collected about 33 km offshore of Eureka, California, contains a high-resolution record of the climate and oceanography of coastal northernmost California during the past ∼7.34 kyr. Chronology established by nine AMS ages on a combination of planktic foraminifers, bivalve shell fragments, and wood yields a mean sedimentation rate of 103 cm kyr−1. Marine proxies (diatoms and silicoflagellates) and pollen transported by the nearby Eel River reveal a stepwise development of both modern offshore surface water oceanography and coastal arboreal ecosystems. Beginning at ∼5.4 cal ka the relative abundance of coastal redwood pollen, a proxy for coastal fog, displays a two fold increase suggesting enhanced coastal upwelling. A decline in the relative contribution of subtropical diatoms at ∼5.0 cal ka implies cooling of sea surface temperatures (SSTs). At ∼3.6 cal ka an increase in the relative abundance of alder and oak at the expense of coastal redwood likely signals intensified riverine transport of pollen from inland environments. Cooler offshore SSTs and increased precipitation characterize the interval between ∼3.6 and 2.8 cal ka. A rapid, stepwise change in coastal climatology and oceanography occurs between ∼2.8 and 2.6 cal ka that suggests an enhanced expression of modern Pacific Decadal Oscillation-like (PDO) cycles. A three-fold increase in the relative abundance of the subtropical diatom Fragilariopsis doliolus at 2.8 cal ka appears to mark an abrupt warming of winter SSTs. Soon afterwards at 2.6 cal ka, a two fold increase in the relative abundance of coastal redwood pollen is suggestive of an abrupt intensification of spring upwelling. After ∼2.8 cal ka a sequence of cool-warm, PDO-like cycles occurs wherein cool cycles are characterized by relative abundance increases in coastal redwood pollen and decreased contributions of subtropical diatoms, whereas opposite proxy trends distinguish warm cycles.
Released January 18, 2017 00:00 EST
2017, Scientific Investigations Report 2016-5175
Victoria G. Christensen, James H. Larson, Ryan P. Maki, Mark B. Sandheinrich, Mark E. Brigham, Claire Kissane, Jamie F. LeDuc
Within Voyageurs National Park in Minnesota, lake levels are controlled by a series of dams to support a variety of uses. Previous research indicates a link between these artificially maintained water levels, referred to as rule curves, and mercury concentrations in fish owing to the drying and rewetting of wetlands and other nearshore areas, which may release methylmercury into the water when inundated. The U.S. Geological Survey, National Park Service, and University of Wisconsin-La Crosse cooperated in a study to assess the importance of lake-level fluctuation and other factors affecting mercury concentrations in Perca flavescens (yellow perch) in the lakes of Voyageurs National Park. For this study, mercury body burdens were determined for young-of-the-year yellow perch collected from the large lakes within Voyageurs National Park during 2013–15. These mercury body burdens were compared to lake levels and water-quality constituents from the same period.
Field properties and profiles of lake water quality indicated that Sand Point, Little Vermilion, and Crane Lakes were anoxic at times near the lake bottom sediments, where sulfate-reducing bacteria may convert mercury to methylmercury. The median dissolved sulfate concentration was highest in Crane Lake, the median total organic carbon concentration was highest in Sand Point Lake, and the median total phosphorus concentration was highest in Kabetogama Lake, all of which is consistent with previous research. All lakes had median chlorophyll a concentrations of 3.6 micrograms per liter or less with the exception of Kabetogama Lake, where the median concentrations were 4.3 micrograms per liter for the midlake sites and 7.1 micrograms per liter and 9.0 micrograms per liter for the nearshore sites.
Mercury concentrations in sampled fish varied widely between years and among lakes, from 14.7 nanograms per gram in fish samples from Kabetogama Lake in 2015 to 178 nanograms per gram in fish samples from Crane Lake in 2014. Data from this study can be combined with ongoing hydrologic modeling studies to evaluate trends in the mercury body burden of fish and different water-level management scenarios prescribed by the 2000 Rule Curves and the 1970 Rule Curves.
Released January 18, 2017 00:00 EST
2016, PeerJ 1-19
Richard A. Erickson, Wayne E. Thogmartin, James E. Diffendorfer, Robin E. Russell, Jennifer A. Szymanski
Wind energy generation holds the potential to adversely affect wildlife populations. Species-wide effects are difficult to study and few, if any, studies examine effects of wind energy generation on any species across its entire range. One species that may be affected by wind energy generation is the endangered Indiana bat (Myotis sodalis), which is found in the eastern and midwestern United States. In addition to mortality from wind energy generation, the species also faces range-wide threats from the emerging infectious fungal disease, white-nose syndrome (WNS). White-nose syndrome, caused by Pseudogymnoascus destructans, disturbs hibernating bats leading to high levels of mortality. We used a spatially explicit full-annual-cycle model to investigate how wind turbine mortality and WNS may singly and then together affect population dynamics of this species. In the simulation, wind turbine mortality impacted the metapopulation dynamics of the species by causing extirpation of some of the smaller winter colonies. In general, effects of wind turbines were localized and focused on specific spatial subpopulations. Conversely, WNS had a depressive effect on the species across its range. Wind turbine mortality interacted with WNS and together these stressors had a larger impact than would be expected from either alone, principally because these stressors together act to reduce species abundance across the spectrum of population sizes. Our findings illustrate the importance of not only prioritizing the protection of large winter colonies as is currently done, but also of protecting metapopulation dynamics and migratory connectivity.
Released January 17, 2017 16:00 EST
2017, Open-File Report 2017-1001
M. Tim Tinker, Joseph Tomoleoni, Nicole LaRoche, Lizabeth Bowen, A. Keith Miles, Mike Murray, Michelle Staedler, Zachary Randell
The re-colonization of the Santa Barbara channel by sea otters brings these ESA-listed marine mammals closer to active oil and gas production facilities, shipping lanes and naturally occurring oil and gas seeps. However, the degree to which sea otters may actually be affected by human-caused oil spills or exposure to natural oil seeps is currently unknown. Between 2012 and 2014, the U.S. Geological Survey and collaborating agencies conducted a telemetry-based study of sea otters in Santa Barbara channel, in order to provide critical information for resource managers (specifically the Bureau of Ocean Energy Management, henceforth BOEM, and the U.S. Fish and Wildlife Service, henceforth USFWS) about the spatial ecology, population status, and potential population threats to sea otters in Santa Barbara Channel, with particular reference to exposure to manmade structures and sources of oil and natural gas. Analysis of spatial monitoring data using a Bayesian-based synoptic model allowed for description of sea otter home ranges, identification of hot-spots of use, and insights into habitat selection behavior by male and female sea otters. Important findings included the deeper modal depth preferred by males versus females, strong preferences by both sexes for areas with persistent kelp canopy, and greater use of soft-sediment areas by males. The synoptic model also provided the ability to predict population-level density distribution for each sex in new habitats: by calculating the value of these probability density distributions at the known locations of natural seeps, we were able to identify those seeps with higher potential for sea otter encounters. The relative probability of occurrence at locations near to some seeps was sufficiently high (about 1% likelihood of occurrence for some of our study animals) that one would anticipate occasional encounters. Data on male and female survival, reproductive success, activity budgets, and body condition all indicated that sea otters in Santa Barbara Channel are not resource limited, and thus we would expect to see continued strong population growth in this area. However, the principal cause of death for study animals was lethal bites by white sharks, suggesting that shark bite mortality represents the single biggest threat to continued population growth in the Santa Barbara Channel.
Released January 17, 2017 00:00 EST
2017, Plant and Soil
James F. White, Katheryn I Kingsley, Kurt P. Kowalski, Ivelisse Irizarry, April Micci, Marcos Antonio Soares, Marshall S. Bergen
Background and aims
Non-native Phragmites australis (haplotype M) is an invasive grass that decreases biodiversity and produces dense stands. We hypothesized that seeds of Phragmites carry microbes that improve seedling growth, defend against pathogens and maximize capacity of seedlings to compete with other plants.
Methods
We isolated bacteria from seeds of Phragmites, then evaluated representatives for their capacities to become intracellular in root cells, and their effects on: 1.) germination rates and seedling growth, 2.) susceptibility to damping-off disease, and 3.) mortality and growth of competitor plant seedlings (dandelion (Taraxacum officionale F. H. Wigg) and curly dock (Rumex crispus L.)).
Results
Ten strains (of 23 total) were identified and characterized; seven were identified as Pseudomonas spp. Strains Sandy LB4 (Pseudomonas fluorescens) and West 9 (Pseudomonas sp.) entered root meristems and became intracellular. These bacteria improved seed germination in Phragmites and increased seedling root branching in Poa annua. They increased plant growth and protected plants from damping off disease. Sandy LB4 increased mortality and reduced growth rates in seedlings of dandelion and curly dock.
Conclusions
Phragmites plants associate with endophytes to increase growth and disease resistance, and release bacteria into the soil to create an environment that is favorable to their seedlings and less favorable to competitor plants.
Released January 17, 2017 00:00 EST
2017, Journal of Great Lakes Research
Patricia M. Armenio, David Bunnell, Jean V. Adams, Nicole M. Watson, Whitney Woelmer
In the Laurentian Great Lakes, zooplankters are often sampled using standard ≤ 153 μm mesh nets without regard to the time of day they are collected. We sampled Cercopagidae during 2013–2014 in northern Lake Huron during day, dusk, and night using two different nets (a 0.5 m wide 153 μm mesh “standard” net and a 0.75 m wide 285 μm mesh “Bythotrephes” net) to determine if there were any differences in their sampled densities. Bythotrephes densities with the standard net were approximately 2.07-fold greater when captured at night than during the day. No time of day bias occurred with the Bythotrephes net. Nighttime Bythotrephes densities did not differ between the two net types. Cercopagis densities did not vary with net type or the time of day in this study, but future work should revisit this result given our low sample size and the low occurrence of Cercopagis in Lake Huron. To reduce bias and calculate accurate density estimates, Cercopagidae should be sampled at night if using a standard net or any time of day with the Bythotrephes net. Given the large impact of invasive predatory cladocerans Bythotrephes longimanus and Cercopagis pengoi on food webs since their invasion in the Laurentian Great Lakes in the 1980s, proper estimation of their densities is essential.
Released January 17, 2017 00:00 EST
2017, Fisheries Research (188) 173-182
Mark R. DuFour, Christine M. Mayer, Patrick Kocovsky, Song Qian, David M. Warner, Richard T. Kraus, Christopher Vandergoot
Hydroacoustic sampling of low-density fish in shallow water can lead to low sample sizes of naturally variable target strength (TS) estimates, resulting in both sparse and variable data. Increasing maximum beam compensation (BC) beyond conventional values (i.e., 3 dB beam width) can recover more targets during data analysis; however, data quality decreases near the acoustic beam edges. We identified the optimal balance between data quantity and quality with increasing BC using a standard sphere calibration, and we quantified the effect of BC on fish track variability, size structure, and density estimates of Lake Erie walleye (Sander vitreus). Standard sphere mean TS estimates were consistent with theoretical values (−39.6 dB) up to 18-dB BC, while estimates decreased at greater BC values. Natural sources (i.e., residual and mean TS) dominated total fish track variation, while contributions from measurement related error (i.e., number of single echo detections (SEDs) and BC) were proportionally low. Increasing BC led to more fish encounters and SEDs per fish, while stability in size structure and density were observed at intermediate values (e.g., 18 dB). Detection of medium to large fish (i.e., age-2+ walleye) benefited most from increasing BC, as proportional changes in size structure and density were greatest in these size categories. Therefore, when TS data are sparse and variable, increasing BC to an optimal value (here 18 dB) will maximize the TS data quantity while limiting lower-quality data near the beam edges.
Released January 17, 2017 00:00 EST
2017, Nature Ecology & Evolution (1)
James B. Grace
Society has an increasing awareness that there are finite limits to what we can expect the planet to absorb and still provide goods and services at current rates1. Both historical reconstructions and contemporary events continue to remind us that ecological regime changes are often abrupt rather than gradual. This reality motivates researchers who seek to discover leading indicators for impending ecosystem change. Berdugo et al.2 report an important advance in our ability to anticipate the conversion of arid lands from self-organized, self-maintaining and productive ecosystems, to a state characterized by disorganization and low functionality. Such conversions have important implications for our understanding of ‘desertification’ — which is a shift from arid to desert-like conditions.
Theoretical studies have suggested that patterns in the patchiness of vegetation might indicate how close a system is to making an abrupt change to desert-like conditions3,4,5. Empirical studies, however, have tended to show instead that simply the total cover of vegetation, rather than its arrangement, often foretells the state of the system4,5,6,7,8,9. Berdugo et al.2 combine these competing ideas into one integrated perspective. They show how major environmental drivers, such as aridity, influence both vegetation cover and patchiness, as well as where self-organizing, stabilizing forces in the vegetation are likely to be found.
Released January 17, 2017 00:00 EST
2017, Journal of Wildlife Diseases (53) 131-135
Christopher N. Jacques, Jonathan A. Jenks, Robert W. Klaver, Shelli A. Dubay
Few studies have evaluated how wetland and forest characteristics influence the prevalence of meningeal worm (Parelaphostrongylus tenuis) infection of deer throughout the grassland biome of central North America. We used previously collected, county-level prevalence data to evaluate associations between habitat characteristics and probability of meningeal worm infection in white-tailed deer (Odocoileus virginianus) across eastern South Dakota, US. The highest-ranked binomial regression model for detecting probability of meningeal worm infection was spring temperature + summer precipitation + percent wetland; weight of evidence (wi=0.71) favored this model over alternative models, though predictive capability was low (Receiver operating characteristic=0.62). Probability of meningeal worm infection increased by 1.3- and 1.6-fold for each 1-cm and 1-C increase in summer precipitation and spring temperature, respectively. Similarly, probability of infection increased 1.2-fold for each 1% increase in wetland habitat. Our findings highlight the importance of wetland habitat in predicting meningeal worm infection across eastern South Dakota. Future research is warranted to evaluate the relationships between climatic conditions (e.g., drought, wet cycles) and deer habitat selection in maintaining P. tenuis along the western boundary of the parasite.
Released January 17, 2017 00:00 EST
2017, Hydrological Processes (31) 324-340
Brian A. Ebel, John A. Moody
We collected soil-hydraulic property data from the literature for wildfire-affected soils, ash, and unburned soils. These data were used to calculate metrics and timescales of hydrologic response related to infiltration and surface runoff generation. Sorptivity (S) and wetting front potential (Ψf) were significantly different (lower) in burned soils compared with unburned soils, whereas field-saturated hydraulic conductivity (Kfs) was not significantly different. The magnitude and duration of the influence of capillarity during infiltration was greatly reduced in burned soils, causing faster ponding times in response to rainfall. Ash had large values of S and Kfs but moderate values of Ψf, compared with unburned and burned soils, indicating ash has long ponding times in response to rainfall. The ratio of S2/Kfs was nearly constant (~100 mm) for unburned soils but more variable in burned soils, suggesting that unburned soils have a balance between gravity and capillarity contributions to infiltration that may depend on soil organic matter, whereas in burned soils the gravity contribution to infiltration is greater. Changes in S and Kfs in burned soils act synergistically to reduce infiltration and accelerate and amplify surface runoff generation. Synthesis of these findings identifies three key areas for future research. First, short timescales of capillary influences on infiltration indicate the need for better measurements of infiltration at times less than 1 min to accurately characterize S in burned soils. Second, using parameter values, such as Ψf, from unburned areas could produce substantial errors in hydrologic modeling when used without adjustment for wildfire effects, causing parameter compensation and resulting underestimation of Kfs. Third, more thorough measurement campaigns that capture soil-structural changes, organic matter impacts, quantitative water repellency trends, and soil-water content along with soil-hydraulic properties could drive the development of better techniques for numerically simulating infiltration in burned areas.
Released January 17, 2017 00:00 EST
2017, Science of the Total Environment (574) 1484-1491
Sarah Jane O. White, Fatima A. Hussain, Harold F. Hemond, Sarah A. Sacco, James P. Shine, Robert L. Runkel, Katherine Walton-Day, Briant A. Kimball
Indium is an increasingly important metal in semiconductors and electronics and has uses in important energy technologies such as photovoltaic cells and light-emitting diodes (LEDs). One significant flux of indium to the environment is from lead, zinc, copper, and tin mining and smelting, but little is known about its aqueous behavior after it is mobilized. In this study, we use Mineral Creek, a headwater stream in southwestern Colorado severely affected by heavy metal contamination as a result of acid mine drainage, as a natural laboratory to study the aqueous behavior of indium. At the existing pH of ~ 3, indium concentrations are 6–29 μg/L (10,000 × those found in natural rivers), and are completely filterable through a 0.45 μm filter. During a pH modification experiment, the pH of the system was raised to > 8, and > 99% of the indium became associated with the suspended solid phase (i.e. does not pass through a 0.45 μm filter). To determine the mechanism of removal of indium from the filterable and likely primarily dissolved phase, we conducted laboratory experiments to determine an upper bound for a sorption constant to iron oxides, and used this, along with other published thermodynamic constants, to model the partitioning of indium in Mineral Creek. Modeling results suggest that the removal of indium from the filterable phase is consistent with precipitation of indium hydroxide from a dissolved phase. This work demonstrates that nonferrous mining processes can be a significant source of indium to the environment, and provides critical information about the aqueous behavior of indium.
Released January 17, 2017 00:00 EST
2017, Open-File Report 2016-1209
Aaron T. Pearse, Mary J. Harner, David M. Baasch, Greg D. Wright, Andrew J. Caven, Kristine L. Metzger
Endangered whooping cranes (Grus americana) of the Aransas-Wood Buffalo population migrate through the Great Plains twice each year. Although there is much interest in conservation and management for this species, information regarding characteristics of nocturnal roost sites used during migration has been limited and based largely on incidental observations. Using high-quality location data collected concurrently, we directed a companion field study designed to characterize sites used as roost or day-use sites to augment knowledge and assist the Platte River Recovery Implementation Program in identifying migration habitat for restoration, conservation, and management actions along the Platte River in central Nebraska. We collected data at 504 roost sites and 83 day-use sites used by marked whooping cranes in Texas, Oklahoma, Kansas, Nebraska, South Dakota, North Dakota, Minnesota, and Montana. Roost sites were located in emergent wetlands (50 percent), lacustrine wetlands (25 percent), rivers (20 percent), and dryland sites (5 percent). Most day-use sites were characterized as dryland sites (54 percent), with the balance in wetlands (45 percent) and rivers (1 percent). Habitat criteria thresholds initially derived by the Platte River Recovery Implementation Program to represent where 90 percent of whooping cranes used along the Platte River were different from those we measured over a larger section of the migration corridor. For most of the metrics, the Platte River Recovery Implementation Program’s initial habitat criteria thresholds would be considered more conservative than critical values estimated from our data; thus, whooping cranes were seemingly able to tolerate a wider range of these metrics than initially suspected. One exception was the metric distance to nearest disturbance feature, where our results suggest that whooping cranes may be less tolerant to nearby disturbances in a larger part of the migration corridor compared to the Platte River. We also determined correlations among some metrics and that using the criteria collectively lead to less than 50 percent of sites we measured being considered whooping crane habitat by the Platte River Recovery Implementation Program. A better understanding of how metrics function collectively may be useful for future efforts in defining habitat for migrating whooping cranes.
Released January 17, 2017 00:00 EST
2017, Scientific Investigations Report 2016-5141
Jennifer M. Cartwright, Timothy H. Diehl
High-resolution digital elevation models (DEMs) derived from light detection and ranging (lidar) enable investigations of stream-channel geomorphology with much greater precision than previously possible. The U.S. Geological Survey has developed the DEM Geomorphology Toolbox, containing seven tools to automate the identification of sites of geomorphic instability that may represent sediment sources and sinks in stream-channel networks. These tools can be used to modify input DEMs on the basis of known locations of stormwater infrastructure, derive flow networks at user-specified resolutions, and identify possible sites of geomorphic instability including steep banks, abrupt changes in channel slope, or areas of rough terrain. Field verification of tool outputs identified several tool limitations but also demonstrated their overall usefulness in highlighting likely sediment sources and sinks within channel networks. In particular, spatial clusters of outputs from multiple tools can be used to prioritize field efforts to assess and restore eroding stream reaches.
Released January 13, 2017 13:30 EST
2017, Scientific Investigations Report 2017-5001
Anthony J. Gotvald
The U.S. Geological Survey, in cooperation with the Georgia Department of Natural Resources, Environmental Protection Division, developed regional regression equations for estimating selected low-flow frequency and mean annual flow statistics for ungaged streams in north Georgia that are not substantially affected by regulation, diversions, or urbanization. Selected low-flow frequency statistics and basin characteristics for 56 streamgage locations within north Georgia and 75 miles beyond the State’s borders in Alabama, Tennessee, North Carolina, and South Carolina were combined to form the final dataset used in the regional regression analysis. Because some of the streamgages in the study recorded zero flow, the final regression equations were developed using weighted left-censored regression analysis to analyze the flow data in an unbiased manner, with weights based on the number of years of record. The set of equations includes the annual minimum 1- and 7-day average streamflow with the 10-year recurrence interval (referred to as 1Q10 and 7Q10), monthly 7Q10, and mean annual flow. The final regional regression equations are functions of drainage area, mean annual precipitation, and relief ratio for the selected low-flow frequency statistics and drainage area and mean annual precipitation for mean annual flow. The average standard error of estimate was 13.7 percent for the mean annual flow regression equation and ranged from 26.1 to 91.6 percent for the selected low-flow frequency equations.
The equations, which are based on data from streams with little to no flow alterations, can be used to provide estimates of the natural flows for selected ungaged stream locations in the area of Georgia north of the Fall Line. The regression equations are not to be used to estimate flows for streams that have been altered by the effects of major dams, surface-water withdrawals, groundwater withdrawals (pumping wells), diversions, or wastewater discharges. The regression equations should be used only for ungaged sites with drainage areas between 1.67 and 576 square miles, mean annual precipitation between 47.6 and 81.6 inches, and relief ratios between 0.146 and 0.607; these are the ranges of the explanatory variables used to develop the equations. An attempt was made to develop regional regression equations for the area of Georgia south of the Fall Line by using the same approach used during this study for north Georgia; however, the equations resulted with high average standard errors of estimates and poorly predicted flows below 0.5 cubic foot per second, which may be attributed to the karst topography common in that area.
The final regression equations developed from this study are planned to be incorporated into the U.S. Geological Survey StreamStats program. StreamStats is a Web-based geographic information system that provides users with access to an assortment of analytical tools useful for water-resources planning and management, and for engineering design applications, such as the design of bridges. The StreamStats program provides streamflow statistics and basin characteristics for U.S. Geological Survey streamgage locations and ungaged sites of interest. StreamStats also can compute basin characteristics and provide estimates of streamflow statistics for ungaged sites when users select the location of a site along any stream in Georgia.
Released January 13, 2017 00:00 EST
2017, PLoS ONE (12)
Howard Ginsberg, Marisa Albert, Lixis Acevedo, Megan C. Dyer, Isis M. Arsnoe, Jean I. Tsao, Thomas N. Mather, Roger A. LeBrun
Recent reports suggest that host-seeking nymphs in southern populations of Ixodes scapularis remain below the leaf litter surface, while northern nymphs seek hosts on leaves and twigs above the litter surface. This behavioral difference potentially results in decreased tick contact with humans in the south, and fewer cases of Lyme disease. We studied whether north-south differences in tick survival patterns might contribute to this phenomenon. Four month old larvae resulting from a cross between Wisconsin males and South Carolina females died faster under southern than under northern conditions in the lab, as has previously been reported for ticks from both northern and southern populations. However, newly-emerged larvae from Rhode Island parents did not differ consistently in mortality under northern and southern conditions, possibly because of their younger age. Survival is lower, and so the north-south survival difference might be greater in older ticks. Larval survival was positively related to larval size (as measured by scutal area), while survival was positively related to larval fat content in some, but not all, trials. The difference in larval survival under northern vs. southern conditions might simply result from faster metabolism under warmer southern conditions leading to shorter life spans. However, ticks consistently died faster under southern than under northern conditions in the laboratory when relative humidity was low (75%), but not under moderate (85%) or high (95%) RH. Therefore, mortality due to desiccation stress is greater under southern than under northern conditions. We hypothesize that mortality resulting from the greater desiccation stress under southern conditions acts as a selective pressure resulting in the evolution of host-seeking behavior in which immatures remain below the leaf litter surface in southern I. scapularis populations, so as to avoid the desiccating conditions at the surface. If this hypothesis is correct, it has implications for the effect of climate change on the future distribution of Lyme disease.
Released January 13, 2017 00:00 EST
2016, San Francisco Estuary and Watershed Science (14)
David H. Schoellhamer, Scott A. Wright, Stephen G. Monismith, Brian Bergamaschi
This paper, part of the collection of research
comprising the State of Bay–Delta Science 2016,
describes advances during the past decade in
understanding flow dynamics and how water-quality
constituents move within California’s Sacramento–
San Joaquin River Delta (Delta). Water-quality
constituents include salinity, heat, oxygen, nutrients,
contaminants, organic particles, and inorganic
particles. These constituents are affected by water
diversions and other human manipulations of flow,
and they greatly affect the quantity and quality of
benthic, pelagic, and intertidal habitat in the Delta.
The Pacific Ocean, the Central Valley watershed,
human intervention, the atmosphere, and internal
biogeochemical processes are all drivers of flow
and transport in the Delta. These drivers provide a
conceptual framework for presenting recent findings.
The tremendous expansion of acoustic and optical
instruments deployed in the Delta over the past
decade has greatly improved our understanding
of how tidal variability affects flow and transport.
Sediment is increasingly viewed as a diminishing
resource needed to sustain pelagic habitat and tidal
marsh, especially as sea level rises. Connections
among the watershed, Delta, and San Francisco Bay
that have been quantified recently highlight that a
landscape view of this system is needed, rather than
consideration of each region in isolation. We discuss
interactions of multiple drivers and information gaps.
Released January 12, 2017 09:30 EST
2017, Data Series 1032
Nancy T. DeWitt, Jennifer L. Miselis, Jake J. Fredericks, Julie C. Bernier, Billy J. Reynolds, Kyle W. Kelso, David M. Thompson, James G. Flocks, Dana S. Wiese
As part of the Barrier Island Evolution Research Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys around the northern Chandeleur Islands, Louisiana, in July and August of 2013. The objective of the study is to better understand barrier-island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual timescales (1‒5 years). Collecting geophysical data will allow us to identify relationships between the geologic history of the island and its present day morphology and sediment distribution. This mapping effort was the third in a series of three planned surveys in this area. High resolution geophysical data collected in each of three consecutive years along this rapidly changing barrier island system will provide a unique time-series dataset that will significantly further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over short time scales (1‒5 years).
This data series includes the geophysical data that were collected during two cruises (USGS Field Activity Numbers (FAN) 13BIM02, 13BIM03, and 13BIM04, in July 2013; and FANs 13BIM07 and 13BIM08 in August 2013) aboard the R/V Sallenger, the R/V Jabba Jaw, and the R/V Shark along the northern portion of the Chandeleur Islands, Breton National Wildlife Refuge, Louisiana. Primary data were acquired with the following equipment: (1) a Systems Engineering and Assessment, Ltd., SWATHplus interferometric sonar (468 kilohertz [kHz]), (2) an EdgeTech 424 (4‒24 kHz) chirp sub-bottom profiling system, and (3) two Odom Hydrographic Systems, Incorporated, Echotrach CV100 single beam echosounders.
This data series report serves as an archive of processed interferometric swath and single-beam bathymetry data. Geographic information system data products include an interpolated digital elevation model, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.
Released January 12, 2017 00:00 EST
2017, Oecologia 1-17
Courtney L. Davis, David A.W. Miller, Susan Walls, William J. Barichivich, Jeffrey W. Riley, Mary E. Brown
Plasticity in life history strategies can be advantageous for species that occupy spatially or temporally variable environments. We examined how phenotypic plasticity influences responses of the mole salamander, Ambystoma talpoideum, to disturbance events at the St. Marks National Wildlife Refuge (SMNWR), FL, USA from 2009 to 2014. We observed periods of extensive drought early in the study, in contrast to high rainfall and expansive flooding events in later years. Flooding facilitated colonization of predatory fishes to isolated wetlands across the refuge. We employed multistate occupancy models to determine how this natural experiment influenced the occurrence of aquatic larvae and paedomorphic adults and what implications this may have for the population. We found that, in terms of occurrence, responses to environmental variation differed between larvae and paedomorphs, but plasticity (i.e. the ability to metamorphose rather than remain in aquatic environment) was not sufficient to buffer populations from declining as a result of environmental perturbations. Drought and fish presence negatively influenced occurrence dynamics of larval and paedomorphic mole salamanders and, consequently, contributed to observed short-term declines of this species. Overall occurrence of larval salamanders decreased from 0.611 in 2009 to 0.075 in 2014 and paedomorph occurrence decreased from 0.311 in 2009 to 0.121 in 2014. Although variation in selection pressures has likely maintained this polyphenism previously, our results suggest that continued changes in environmental variability and the persistence of fish in isolated wetlands could lead to a loss of paedomorphosis in the SMNWR population and, ultimately, impact regional persistence in the future.
Released January 12, 2017 00:00 EST
2017, Ore Geology Reviews (80) 767-783
Edward A. du Bray
Newly synthesized data indicate that the geochemistry of igneous rocks associated with epithermal mineral deposits varies extensively and continuously from subalkaline basaltic to rhyolitic compositions. Trace element and isotopic data for these rocks are consistent with subduction-related magmatism and suggest that the primary source magmas were generated by partial melting of the mantle-wedge above subducting oceanic slabs. Broad geochemical and petrographic diversity of individual igneous rock units associated with epithermal deposits indicate that the associated magmas evolved by open-system processes. Following migration to shallow crustal reservoirs, these magmas evolved by assimilation, recharge, and partial homogenization; these processes contribute to arc magmatism worldwide.
Although epithermal deposits with the largest Au and Ag production are associated with felsic to intermediate composition igneous rocks, demonstrable relationships between magmas having any particular composition and epithermal deposit genesis are completely absent because the composition of igneous rock units associated with epithermal deposits ranges from basalt to rhyolite. Consequently, igneous rock compositions do not constitute effective exploration criteria with respect to identification of terranes prospective for epithermal deposit formation. However, the close spatial and temporal association of igneous rocks and epithermal deposits does suggest a mutual genetic relationship. Igneous systems likely contribute heat and some of the fluids and metals involved in epithermal deposit formation. Accordingly, deposit formation requires optimization of source metal contents, appropriate fluid compositions and characteristics, structural features conducive to hydrothermal fluid flow and confinement, and receptive host rocks, but not magmas with special compositional characteristics.
Released January 12, 2017 00:00 EST
2017, Journal of Environmental Management (190) 28-34
Sarah C. Hafner, Naoko Watanabe, Thomas Harter, Brian Bergamaschi, Sanjai J. Parikh
Environmental release of veterinary pharmaceuticals has been of regulatory concern for more than a decade. Monensin is a feed additive antibiotic that is prevalent throughout the dairy industry and is excreted in dairy waste. This study investigates the potential of dairy waste management practices to alter the amount of monensin available for release into the environment. Analysis of wastewater and groundwater from two dairy farms in California consistently concluded that monensin is most present in lagoon water and groundwater downgradient of lagoons. Since the lagoons represent a direct source of monensin to groundwater, the effect of waste management, by mechanical screen separation and lagoon aeration, on aqueous monensin concentration was investigated through construction of lagoon microcosms. The results indicate that monensin attenuation is not improved by increased solid-liquid separation prior to storage in lagoons, as monensin is rapidly desorbed after dilution with water. Monensin is also shown to be easily degraded in lagoon microcosms receiving aeration, but is relatively stable and available for leaching under typical anaerobic lagoon conditions.
Released January 12, 2017 00:00 EST
2017, Fact Sheet 2016-3069
Vincent E. White, Lawrence B. Prakken
Information concerning the availability, use, and quality of water in East Feliciana Parish, Louisiana, is critical for proper water-resource management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. Information is presented on the availability, past and current use, use trends, and water quality from groundwater and surface-water sources in the parish. Previously published reports and data stored in the U.S. Geological Survey’s National Water Information System (http://waterdata.usgs.gov/nwis) are the primary sources of the information presented here.
Released January 12, 2017 00:00 EST
2017, Fact Sheet 2016-3066
Vincent E. White, Lawrence B. Prakken
Information concerning the availability, use, and quality of water in Calcasieu Parish, Louisiana, is critical for proper water-resource management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. Information on the availability, past and current use, use trends, and water quality from groundwater and surface-water sources in the parish is presented. Previously published reports and data stored in the U.S. Geological Survey’s National Water Information System (http://dx.doi.org/10.5066/F7P55KJN) are the primary sources of the information presented here.
Released January 12, 2017 00:00 EST
2016, Science of the Total Environment (572) 906-914
Christine Vatovec, Patrick Phillips, Emily Van Wagoner, Tia-Marie Scott, Edward T. Furlong
Pharmaceutical pollution in surface waters poses risks to human and ecosystem health. Wastewater treatment facilities are primary sources of pharmaceutical pollutants, but little is known about the factors that affect drugs entering the wastewater stream. This paper investigates the effects of student pharmaceutical use and disposal behaviors and an annual demographic shift on pharmaceutical pollution in a university town. We sampled wastewater effluent during a ten-day annual spring student move-out period at the University of Vermont. We then interpreted these data in light of survey results that investigated pharmaceutical purchasing, use, and disposal practices among the university student population. Surveys indicated that the majority of student respondents purchased pharmaceuticals in the previous year. Many students reported having leftover drugs, though only a small portion disposed of them, mainly in the trash.
We detected 51 pharmaceuticals in 80% or more of the wastewater effluent samples collected over the ten-day sampling period. Several increased in concentration after students left the area. Concentrations of caffeine and nicotine decreased weakly. Drug disposal among this university student population does not appear to be a major source of pharmaceuticals in wastewater. Increases in pharmaceutical concentration after the students left campus can be tied to an increase in the seasonal use of allergy medications directly related to pollen, as well as a demographic shift to a year-round older population, which supports national data that older people use larger volumes and different types of pharmaceuticals than the younger student population.
Released January 11, 2017 16:45 EST
2017, Fact Sheet 2016-3102
Gail Moede Rogall, Jonathan M. Sleeman
In 1975, the Federal government responded to the need for establishing national expertise in wildlife health by creating the National Wildlife Health Center (NWHC), a facility within the Department of the Interior; the NWHC is the only national center dedicated to wildlife disease detection, control, and prevention. Its mission is to provide national leadership to safeguard wildlife and ecosystem health through active partnerships and exceptional science. Comparisons are often made between the NWHC, which strives to protect the health of our Nation’s wildlife, and the Centers for Disease Control and Prevention (CDC), which strive to protect public health. The NWHC, a science center of the U.S. Geological Survey (USGS) with specialized laboratories, works to safeguard the Nation’s wildlife from diseases by studying the causes and drivers of these threats, and by developing strategies to prevent and manage them. In addition to the main campus, located in Madison, Wisconsin, the NWHC also operates the Honolulu Field Station that addresses wildlife health issues in Hawaii and the Pacific Region.
Released January 11, 2017 16:00 EST
2017, Open-File Report 2016-1192
Gavin P. Hayes, Emma K. Meyers, James W. Dewey, Richard W. Briggs, Paul S. Earle, Harley M. Benz, Gregory M. Smoczyk, Hanna E. Flamme, William D. Barnhart, Ryan D. Gold, Kevin P. Furlong
This paper describes the tectonic summaries for all magnitude 7 and larger earthquakes in the period 2000–2015, as produced by the U.S. Geological Survey National Earthquake Information Center during their routine response operations to global earthquakes. The goal of such summaries is to provide important event-specific information to the public rapidly and concisely, such that recent earthquakes can be understood within a global and regional seismotectonic framework. We compile these summaries here to provide a long-term archive for this information, and so that the variability in tectonic setting and earthquake history from region to region, and sometimes within a given region, can be more clearly understood.
Released January 11, 2017 00:00 EST
2017, Energy & Fuels (31) 140-153
Ray Boswell, David Schoderbek, Timothy S. Collett, Satoshi Ohtsuki, Mark White, Brian J. Anderson
The Iġnik Sikumi Gas Hydrate Exchange Field Experiment was conducted by ConocoPhillips in partnership with the U.S. Department of Energy, the Japan Oil, Gas and Metals National Corporation, and the U.S. Geological Survey within the Prudhoe Bay Unit on the Alaska North Slope during 2011 and 2012. The primary goals of the program were to (1) determine the feasibility of gas injection into hydrate-bearing sand reservoirs and (2) observe reservoir response upon subsequent flowback in order to assess the potential for CO2 exchange for CH4 in naturally occurring gas hydrate reservoirs. Initial modeling determined that no feasible means of injection of pure CO2 was likely, given the presence of free water in the reservoir. Laboratory and numerical modeling studies indicated that the injection of a mixture of CO2 and N2 offered the best potential for gas injection and exchange. The test featured the following primary operational phases: (1) injection of a gaseous phase mixture of CO2, N2, and chemical tracers; (2) flowback conducted at downhole pressures above the stability threshold for native CH4 hydrate; and (3) an extended (30-days) flowback at pressures near, and then below, the stability threshold of native CH4 hydrate. The test findings indicate that the formation of a range of mixed-gas hydrates resulted in a net exchange of CO2 for CH4 in the reservoir, although the complexity of the subsurface environment renders the nature, extent, and efficiency of the exchange reaction uncertain. The next steps in the evaluation of exchange technology should feature multiple well applications; however, such field test programs will require extensive preparatory experimental and numerical modeling studies and will likely be a secondary priority to further field testing of production through depressurization. Additional insights gained from the field program include the following: (1) gas hydrate destabilization is self-limiting, dispelling any notion of the potential for uncontrolled destabilization; (2) gas hydrate test wells must be carefully designed to enable rapid remediation of wellbore blockages that will occur during any cessation in operations; (3) sand production during hydrate production likely can be managed through standard engineering controls; and (4) reservoir heat exchange during depressurization was more favorable than expected—mitigating concerns for near-wellbore freezing and enabling consideration of more aggressive pressure reduction.
Released January 11, 2017 00:00 EST
2017, Open-File Report 2016-1198
Brian K. Breaker
Heavy rainfall during December 2015 resulted in flooding across parts of Arkansas; rainfall amounts were as high as 12 inches over a period from December 27, 2015, to December 29, 2015. Although precipitation accumulations were highest in northwestern Arkansas, significant flooding occurred in other parts of the State. Flood damage occurred in several counties as water levels rose in streams, and disaster declarations were declared in 32 of the 75 counties in Arkansas.
Given the severity of the December 2015 flooding, the U.S. Geological Survey (USGS), in cooperation with the Federal Emergency Management Agency (FEMA), conducted a study to document the meteorological and hydrological conditions prior to and during the flood; compiled flood-peak gage heights, streamflows, and flood probabilities at USGS streamflow-gaging stations; and estimated streamflows and flood probabilities at selected ungaged locations.
Released January 11, 2017 00:00 EST
2016, Journal of Visualized Experiments (117)
Gregory B. Lawrence, Ivan J. Fernandez, Paul W. Hazlett, Scott W. Bailey, Donald S. Ross, Thomas R. Villars, Angelica Quintana, Rock Ouimet, Michael McHale, Chris E. Johnson, Russell D. Briggs, Robert A. Colter, Jason Siemion, Olivia L. Bartlett, Olga Vargas, Michael Antidormi, Mary Margaret Koppers
Recent soils research has shown that important chemical soil characteristics can change in less than a decade, often the result of broad environmental changes. Repeated sampling to monitor these changes in forest soils is a relatively new practice that is not well documented in the literature and has only recently been broadly embraced by the scientific community. The objective of this protocol is therefore to synthesize the latest information on methods of soil resampling in a format that can be used to design and implement a soil monitoring program. Successful monitoring of forest soils requires that a study unit be defined within an area of forested land that can be characterized with replicate sampling locations. A resampling interval of 5 years is recommended, but if monitoring is done to evaluate a specific environmental driver, the rate of change expected in that driver should be taken into consideration. Here, we show that the sampling of the profile can be done by horizon where boundaries can be clearly identified and horizons are sufficiently thick to remove soil without contamination from horizons above or below. Otherwise, sampling can be done by depth interval. Archiving of sample for future reanalysis is a key step in avoiding analytical bias and providing the opportunity for additional analyses as new questions arise.
Released January 11, 2017 00:00 EST
2016, Journal of Herpetology (50) 570-581
David J. Muñoz, David A.W. Miller, Chris Sutherland, Evan H. Campbell Grant
The cryptic behavior and ecology of herpetofauna make estimating the impacts of environmental change on demography difficult; yet, the ability to measure demographic relationships is essential for elucidating mechanisms leading to the population declines reported for herpetofauna worldwide. Recently developed spatial capture–recapture (SCR) methods are well suited to standard herpetofauna monitoring approaches. Individually identifying animals and their locations allows accurate estimates of population densities and survival. Spatial capture–recapture methods also allow estimation of parameters describing space-use and movement, which generally are expensive or difficult to obtain using other methods. In this paper, we discuss the basic components of SCR models, the available software for conducting analyses, and the experimental designs based on common herpetological survey methods. We then apply SCR models to Red-backed Salamander (Plethodon cinereus), to determine differences in density, survival, dispersal, and space-use between adult male and female salamanders. By highlighting the capabilities of SCR, and its advantages compared to traditional methods, we hope to give herpetologists the resource they need to apply SCR in their own systems.
Released January 11, 2017 00:00 EST
2016, Ecology and Evolution (6) 8740-8755
David J. Muñoz, Kyle Miller Hesed, Evan H. Campbell Grant, David A.W. Miller
Multiple pathways exist for species to respond to changing climates. However, responses of dispersal-limited species will be more strongly tied to ability to adapt within existing populations as rates of environmental change will likely exceed movement rates. Here, we assess adaptive capacity in Plethodon cinereus, a dispersal-limited woodland salamander. We quantify plasticity in behavior and variation in demography to observed variation in environmental variables over a 5-year period. We found strong evidence that temperature and rainfall influence P. cinereus surface presence, indicating changes in climate are likely to affect seasonal activity patterns. We also found that warmer summer temperatures reduced individual growth rates into the autumn, which is likely to have negative demographic consequences. Reduced growth rates may delay reproductive maturity and lead to reductions in size-specific fecundity, potentially reducing population-level persistence. To better understand within-population variability in responses, we examined differences between two common color morphs. Previous evidence suggests that the color polymorphism may be linked to physiological differences in heat and moisture tolerance. We found only moderate support for morph-specific differences for the relationship between individual growth and temperature. Measuring environmental sensitivity to climatic variability is the first step in predicting species' responses to climate change. Our results suggest phenological shifts and changes in growth rates are likely responses under scenarios where further warming occurs, and we discuss possible adaptive strategies for resulting selective pressures.
Released January 10, 2017 00:00 EST
2017, SOIL (3) 17-30
Lesego Khomo, Susan E. Trumbore, Carleton R. Bern, Oliver A. Chadwick
Organic matter–mineral associations stabilize much of the carbon (C) stored globally in soils. Metastable short-range-order (SRO) minerals such as allophane and ferrihydrite provide one mechanism for long-term stabilization of organic matter in young soil. However, in soils with few SRO minerals and a predominance of crystalline aluminosilicate or Fe (and Al) oxyhydroxide, C turnover should be governed by chemisorption with those minerals. Here, we correlate mineral composition from soils containing small amounts of SRO minerals with mean turnover time (TT) of C estimated from radiocarbon (14C) in bulk soil, free light fraction and mineral-associated organic matter. We varied the mineral amount and composition by sampling ancient soils formed on different lithologies in arid to subhumid climates in Kruger National Park (KNP), South Africa. Mineral contents in bulk soils were assessed using chemical extractions to quantify Fe oxyhydroxides and SRO minerals. Because of our interest in the role of silicate clay mineralogy, particularly smectite (2 : 1) and kaolinite (1 : 1), we separately quantified the mineralogy of the clay-sized fraction using X-ray diffraction (XRD) and measured 14C on the same fraction.
Density separation demonstrated that mineral associated C accounted for 40–70 % of bulk soil organic C in A and B1 horizons for granite, nephelinite and arid-zone gabbro soils, and > 80 % in other soils. Organic matter strongly associated with the isolated clay-sized fraction represented only 9–47 % of the bulk soil C. The mean TT of C strongly associated with the clay-sized fraction increased with the amount of smectite (2 : 1 clays); in samples with > 40 % smectite it averaged 1020 ± 460 years. The C not strongly associated with clay-sized minerals, including a combination of low-density C, the C associated with minerals of sizes between 2 µm and 2 cm (including Fe oxyhydroxides as coatings), and C removed from clay-sized material by 2 % hydrogen peroxide had TTs averaging 190 ± 190 years in surface horizons. Summed over the bulk soil profile, we found that smectite content correlated with the mean TT of bulk soil C across varied lithologies. The SRO mineral content in KNP soils was generally very low, except for the soils developed on gabbros under more humid climate that also had very high Fe and C contents with a surprisingly short, mean C TTs. In younger landscapes, SRO minerals are metastable and sequester C for long timescales. We hypothesize that in the KNP, SRO minerals represent a transient stage of mineral evolution and therefore lock up C for a shorter time.
Overall, we found crystalline Fe-oxyhydroxides (determined as the difference between Fe in dithionate citrate and oxalate extractions) to be the strongest predictor for soil C content, while the mean TT of soil C was best predicted from the amount of smectite, which was also related to more easily measured bulk properties such as cation exchange capacity or pH. Combined with previous research on C turnover times in 2 : 1 vs. 1 : 1 clays, our results hold promise for predicting C inventory and persistence based on intrinsic timescales of specific carbon–mineral interactions.
Released January 10, 2017 00:00 EST
2017, Geochimica et Cosmochimica Acta
Arthur F. White, Marjorie S. Schulz, Corey R. Lawrence, Davison V. Vivit, David A. Stonestrom
Four pairs of fresh and partly-weathered granitoids, obtained from well-characterized watersheds—Merced River, CA, USA; Panola, GA, USA; Loch Vale, CO, USA, and Rio Icacos, Puerto Rico—were reacted in columns under ambient laboratory conditions for 13.8 yrs, the longest running experimental weathering study to date. Low total column mass losses (<1 wt. %), correlated with the absence of pitting or surface roughening of primary silicate grains. BET surface area (SBET) increased, primarily due to Fe-oxyhydroxide precipitation. Surface areas returned to within factors of 2 to 3 of their original values after dithionite extraction. Miscible displacement experiments indicated homogeneous plug flow with negligible immobile water, commonly cited for column experiments. Fresh granitoid effluent solute concentrations initially declined rapidly, followed by much slower decreases over the next decade. Weathered granitoid effluent concentrations increased modestly over the same time period, indicating losses of natural Fe-oxide and/or clay coatings and the increased exposure of primary mineral surfaces. Corresponding (fresh and weathered) elemental effluent concentrations trended toward convergence during the last decade of reaction. NETPATH/PHREEQC code simulations indicated non-stoichiometric dissolution involving Ca release from disseminated calcite and excess K release from interlayer biotite. Effluent 87Sr/85Sr ratios reflected a progressive weathering sequence beginning and ending with 87Sr/85Sr values of plagioclase with an additional calcite input and a radiogenic biotite excursion proportional to the granitoid ages.
Effluents became thermodynamically saturated with goethite and gibbsite, slightly under-saturated with kaolinite and strongly under-saturated with plagioclase, consistent with kinetically-limited weathering in which solutes such as Na varied with column flow rates. Effluent Na concentrations showed no clear trend with time during the last decade of reaction (fresh granitoids) or increased slowly with time (weathered granitoids). Analysis of cumulative Na release indicated that plagioclase dissolution achieved steady state in 3 of the 4 fresh granitoids during the last decade of reaction. Surface-area normalized plagioclase dissolution rates exhibited a narrow range (0.95 to 1.26 10-13 moles m-2 s-1), in spite of significant stoichiometric differences (An0.21 to An0.50). Rates were an order of magnitude slower than previously reported in shorter duration experiments but generally 2 to 3 orders of magnitude faster than corresponding natural analogs. CrunchFlow simulations indicated that more than a hundredfold decrease in column flow rates would be required to produce near-saturation reaction affinities that would start to slow plagioclase weathering to real-world levels. Extending simulations to approximate long term weathering in naturally weathered profiles required additional decreases in the intrinsic plagioclase dissolution and kaolinite precipitation rates and relatively large decreases in the fluid flow rate, implying that exposure to reactive mineral surfaces is significantly limited in the natural environment compared to column experiments.
Released January 10, 2017 00:00 EST
2017, Ecological Modelling (347) 50-62
Matthew J. Johnson, James R. Hatten, Jennifer A. Holmes, Patrick B. Shafroth
The western population of the yellow-billed cuckoo (Coccyzus americanus) was recently listed as threatened under the federal Endangered Species Act. Yellow-billed cuckoo conservation efforts require the identification of features and area requirements associated with high quality, riparian forest habitat at spatial scales that range from nest microhabitat to landscape, as well as lower-suitability areas that can be enhanced or restored. Spatially explicit models inform conservation efforts by increasing ecological understanding of a target species, especially at landscape scales. Previous yellow-billed cuckoo modelling efforts derived plant-community maps from aerial photography, an expensive and oftentimes inconsistent approach. Satellite models can remotely map vegetation features (e.g., vegetation density, heterogeneity in vegetation density or structure) across large areas with near perfect repeatability, but they usually cannot identify plant communities. We used aerial photos and satellite imagery, and a hierarchical spatial scale approach, to identify yellow-billed cuckoo breeding habitat along the Lower Colorado River and its tributaries. Aerial-photo and satellite models identified several key features associated with yellow-billed cuckoo breeding locations: (1) a 4.5 ha core area of dense cottonwood-willow vegetation, (2) a large native, heterogeneously dense forest (72 ha) around the core area, and (3) moderately rough topography. The odds of yellow-billed cuckoo occurrence decreased rapidly as the amount of tamarisk cover increased or when cottonwood-willow vegetation was limited. We achieved model accuracies of 75–80% in the project area the following year after updating the imagery and location data. The two model types had very similar probability maps, largely predicting the same areas as high quality habitat. While each model provided unique information, a dual-modelling approach provided a more complete picture of yellow-billed cuckoo habitat requirements and will be useful for management and conservation activities.
Released January 10, 2017 00:00 EST
2017, Journal of Agricultural, Biological, and Environmental Statistics
Trevor J. Hefley, Mevin B. Hooten, Ephraim M. Hanks, Robin E. Russell, Daniel P. Walsh
Generalized linear mixed models for spatial processes are widely used in applied statistics. In many applications of the spatial generalized linear mixed model (SGLMM), the goal is to obtain inference about regression coefficients while achieving optimal predictive ability. When implementing the SGLMM, multicollinearity among covariates and the spatial random effects can make computation challenging and influence inference. We present a Bayesian group lasso prior with a single tuning parameter that can be chosen to optimize predictive ability of the SGLMM and jointly regularize the regression coefficients and spatial random effect. We implement the group lasso SGLMM using efficient Markov chain Monte Carlo (MCMC) algorithms and demonstrate how multicollinearity among covariates and the spatial random effect can be monitored as a derived quantity. To test our method, we compared several parameterizations of the SGLMM using simulated data and two examples from plant ecology and disease ecology. In all examples, problematic levels multicollinearity occurred and influenced sampling efficiency and inference. We found that the group lasso prior resulted in roughly twice the effective sample size for MCMC samples of regression coefficients and can have higher and less variable predictive accuracy based on out-of-sample data when compared to the standard SGLMM.
Released January 09, 2017 13:30 EST
2017, Scientific Investigations Map 3371
David J. Lidke, Charles D. Blome
This 1:24,000-scale geologic map includes new geologic mapping as well as compilation and revision of previous geologic maps in the area. Field investigations were carried out during 2009–2011 that included mapping and investigations of the geology and hydrology of the Chickasaw National Recreation Area, Oklahoma, west of the map area.
The Fittstown quadrangle is in Pontotoc and Johnston Counties in south-central Oklahoma, which is in the northeastern part of the Arbuckle Mountains. The Arbuckle Mountains are composed of a thick sequence of Paleozoic sedimentary rocks that overlie Lower Cambrian and Precambrian igneous rocks; these latter rocks are not exposed in the quadrangle. From Middle to Late Pennsylvanian time, the Arbuckle Mountains region was folded, faulted, and uplifted. Periods of erosion followed these Pennsylvanian mountain-building events, beveling this region and ultimately developing the current subtle topography that includes hills and incised uplands. The southern and northwestern parts of the Fittstown quadrangle are directly underlain by Lower Ordovician dolomite of the Arbuckle Group that has eroded to form an extensive, stream-incised upland containing the broad, gently southeast-plunging, Pennsylvanian-age Hunton anticline. The northeastern part of the map area is underlain by Middle Ordovician to Pennsylvanian limestone, shale, and sandstone units that predominantly dip northeast and form the northeastern limb of the Hunton anticline; this limb is cut by steeply dipping, northwest-southeast striking faults of the Franks fault zone. This limb and the Franks fault zone define the southwestern margin of the Franks graben, which is underlain by Pennsylvanian rocks in the northeast part of the map area.
Released January 09, 2017 00:00 EST
2017, Environmental Entomology
Matthew Smart, Robert S. Cornman, Deborah Iwanowicz, Margaret McDermott-Kubeczko, Jeff S Pettis, Marla S Spivak, Clint R. Otto
Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested on a spatially or temporally robust number of pollen samples. Here, we compare pollen identification results derived from light microscopy and DNA sequencing techniques with samples collected from honey bee colonies embedded within a gradient of intensive agricultural landscapes in the Northern Great Plains throughout the 2010–2011 growing seasons. We demonstrate that at all taxonomic levels, DNA sequencing was able to discern a greater number of taxa, and was particularly useful for the identification of infrequently detected species. Importantly, substantial phenological overlap did occur for commonly detected taxa using either technique, suggesting that DNA sequencing is an appropriate, and enhancing, substitutive technique for accurately capturing the breadth of bee-collected species of pollen present across agricultural landscapes. We also show that honey bees located in high and low intensity agricultural settings forage on dissimilar plants, though with overlap of the most abundantly collected pollen taxa. We highlight practical applications of utilizing sequencing technology, including addressing ecological issues surrounding land use, climate change, importance of taxa relative to abundance, and evaluating the impact of conservation program habitat enhancement efforts.
Released January 09, 2017 00:00 EST
2017, North American Journal of Fisheries Management (37) 133-148
Rebecca L. Eberts, Bjorn Wissel, Gavin L. Simpson, Stephen S. Crawford, Wendylee Stott, Robert H. Hanner, Richard G. Manzon, Joanna Y. Wilson, Douglas R. Boreham, Christopher M. Somers
Lake Whitefish Coregonus clupeaformis is the most commercially valuable species in Lake Huron. The fishery for this species has historically been managed based on 25 management units (17 in Canada, 8 in the USA). However, congruence between the contemporary population structure of Lake Whitefish and management units is poorly understood. We used stable isotopes of carbon (δ13C) and nitrogen (δ15N), food web markers that reflect patterns in resource use (i.e., prey, location, habitat), to assess the population structure of spawning-phase Lake Whitefish collected from 32 sites (1,474 fish) across Lake Huron. We found large isotopic variation among fish from different sites (ranges: δ13C = 10.2‰, δ15N = 5.5‰) and variable niche size and levels of overlap (standard ellipse area = 1.0–4.3‰2). Lake Huron contained spawning-phase fish from four major isotopic clusters largely defined by extensive variation in δ13C, and the isotopic composition of fish sampled was spatially structured both within and between lake basins. Based on cluster compositions, we identified six putative regional groups, some of which represented sites of high diversity (three to four clusters) and others with less (one to two clusters). Analysis of isotopic values from Lake Whitefish collected from summer feeding locations and baseline prey items showed similar isotopic variation and established spatial linkage between spawning-phase and summer fish. Our results show that summer feeding location contributes strongly to the isotopic structure we observed in spawning-phase fish. One of the regional groups we identified in northern Georgian Bay is highly distinct based on isotopic composition and possibly ecologically unique within Lake Huron. Our findings are congruent with several previous studies using different markers (genetics, mark–recapture), and we conclude that current management units are generally too small and numerous to reflect the population structure of Lake Whitefish in Lake Huron.
Released January 09, 2017 00:00 EST
2017, Scientific Investigations Report 2016-5168
Guy M. Foster, Jennifer L. Graham, Tom C. Stiles, Marvin G. Boyer, Lindsey R. King, Keith A. Loftin
Cyanobacterial harmful algal blooms (CyanoHABs) tend to be spatially variable vertically in the water column and horizontally across the lake surface because of in-lake and weather-driven processes and can vary by orders of magnitude in concentration across relatively short distances (meters or less). Extreme spatial variability in cyanobacteria and associated compounds poses unique challenges to collecting representative samples for scientific study and public-health protection. The objective of this study was to assess the spatial variability of cyanobacteria and microcystin in Milford Lake, Kansas, using data collected on July 27 and August 31, 2015. Spatially dense near-surface data were collected by the U.S. Geological Survey, nearshore data were collected by the Kansas Department of Health and Environment, and open-water data were collected by U.S. Army Corps of Engineers. CyanoHABs are known to be spatially variable, but that variability is rarely quantified. A better understanding of the spatial variability of cyanobacteria and microcystin will inform sampling and management strategies for Milford Lake and for other lakes with CyanoHAB issues throughout the Nation.
The CyanoHABs in Milford Lake during July and August 2015 displayed the extreme spatial variability characteristic of cyanobacterial blooms. The phytoplankton community was almost exclusively cyanobacteria (greater than 90 percent) during July and August. Cyanobacteria (measured directly by cell counts and indirectly by regression-estimated chlorophyll) and microcystin (measured directly by enzyme-linked immunosorbent assay [ELISA] and indirectly by regression estimates) concentrations varied by orders of magnitude throughout the lake. During July and August 2015, cyanobacteria and microcystin concentrations decreased in the downlake (towards the outlet) direction.
Nearshore and open-water surface grabs were collected and analyzed for microcystin as part of this study. Samples were collected in the uplake (Zone C), midlake (Zone B), and downlake (Zone A) parts of the lake. Overall, no consistent pattern was indicated as to which sample location (nearshore or open water) had the highest microcystin concentrations. In July, the maximum microcystin concentration observed in each zone was detected at a nearshore site, and in August, maximum microcystin concentrations in each zone were detected at an open-water site.
The Kansas Department of Health and Environment uses two guidance levels (a watch and a warning level) to issue recreational public-health advisories for CyanoHABs in Kansas lakes. The levels are based on concentrations of microcystin and numbers of cyanobacteria. In July and August, discrete water-quality samples were predominantly indicative of warning status in Zone C, watch status in Zone B, and no advisories in Zone A. Regression-estimated microcystin concentrations, which provided more thorough coverage of Milford Lake (n=683–720) than discrete samples (n=21–24), generally indicated the same overall pattern. Regardless of the individual agencies sampling approach, the overall public-health advisory status of each zone in Milford Lake was similar according to the Kansas Department of Health and Environment guidance levels.
Released January 09, 2017 00:00 EST
2016, Global Biogeochemical Cycles (30) 1578-1598
Paul H. Glaser, Donald I. Siegel, Jeffrey P. Chanton, Andrew S. Reeve, Donald O. Rosenberry, J. Elizabeth Corbett, Soumitri Dasgupta, Zeno Levy
Northern peatlands are an important source for greenhouse gases, but their capacity to produce methane remains uncertain under changing climatic conditions. We therefore analyzed a 43 year time series of the pore-water chemistry to determine if long-term shifts in precipitation altered the vertical transport of solutes within a large peat basin in northern Minnesota. These data suggest that rates of methane production can be finely tuned to multidecadal shifts in precipitation that drive the vertical penetration of labile carbon substrates within the Glacial Lake Agassiz Peatlands. Tritium and cation profiles demonstrate that only the upper meter of these peat deposits was flushed by downwardly moving recharge from 1965 to 1983 during a Transitional Dry-to-Moist Period. However, a shift to a moister climate after 1984 drove surface waters much deeper, largely flushing the pore waters of all bogs and fens to depths of 2 m. Labile carbon compounds were transported downward from the rhizosphere to the basal peat at this time producing a substantial enrichment of methane in Δ14C with respect to the solid-phase peat from 1991 to 2008. These data indicate that labile carbon substrates can fuel deep production zones of methanogenesis that more than doubled in thickness across this large peat basin after 1984. Moreover, the entire peat profile apparently has the capacity to produce methane from labile carbon substrates depending on climate-driven modes of solute transport. Future changes in precipitation may therefore play a central role in determining the source strength of peatlands in the global methane cycle.
Released January 06, 2017 15:30 EST
2017, Data Series 1022
Dominick J. Antolino, Melinda J. Chapman
The U.S. Geological Survey South Atlantic Water Science Center collected borehole geophysical logs and images and continuous water-level data near the GMH Electronics National Priorities List Superfund site near Roxboro, North Carolina, during December 2012 through July 2015. Previous work by the U.S. Geological Survey South Atlantic Water Science Center at the site involved the collection of borehole geophysical log data in 15 wells, in addition to surface geologic mapping and passive diffusion bag sampling. In a continued effort to assist the U.S. Environmental Protection Agency in developing a conceptual groundwater model to assess current contaminant distribution and future migration of contaminants, more than 900 subsurface features (primarily fracture orientations) in 10 open borehole wells were delineated and continuous water-level data information from 14 monitoring wells within close proximity of the initially drilled boreholes was collected to observe any induced water-level fluctuations during drilling operations
Released January 06, 2017 00:00 EST
2017, Bulletin of Environmental Contamination and Toxicology (98) 1-1
Christopher J. Schmitt
Heavy metal contamination at shooting ranges is well documented (e.g., Heier et al. 2009; Islam et al. 2016). Primarily lead, but also copper, zinc, and antimony often occur at high concentrations in shooting range soils; cadmium, nickel, silver, and arsenic may also be present (Cao et al. 2003; Islam et al. 2016). These metals represent a potential threat to human health and wildlife. Although much of the lead and other metals remains in the soil (Clausen et al. 2011), some metals can also contaminate groundwater and surface water and thereby threaten aquatic life (Heier et al. 2009). Results of a study published in the current issue of the Bulletin of Environmental Contamination and Toxicology (Stauffer et al. 2017) indicate that mercury contamination may also be an issue at shooting ranges, which has not been previously reported.
Released January 05, 2017 07:00 EST
2016, Open-File Report 2016-1202
Katherine J. Chase, Andrew R. Bock, Roy Sando
This report provides an overview of current (2016) U.S. Geological Survey policies and practices related to publishing data on ScienceBase, and an example interactive mapping application to display those data. ScienceBase is an integrated data sharing platform managed by the U.S. Geological Survey. This report describes resources that U.S. Geological Survey Scientists can use for writing data management plans, formatting data, and creating metadata, as well as for data and metadata review, uploading data and metadata to ScienceBase, and sharing metadata through the U.S. Geological Survey Science Data Catalog. Because data publishing policies and practices are evolving, scientists should consult the resources cited in this paper for definitive policy information.
An example is provided where, using the content of a published ScienceBase data release that is associated with an interpretive product, a simple user interface is constructed to demonstrate how the open source capabilities of the R programming language and environment can interact with the properties and objects of the ScienceBase item and be used to generate interactive maps
Released January 05, 2017 00:00 EST
2017, PeerJ (5)
Jeremy S. Bril, Kathryn Langenfeld, Craig L. Just, Scott N. Spak, Teresa Newton
A freshwater “mussel mortality threshold” was explored as a function of porewater ammonium (NH4+) concentration, mussel biomass, and total nitrogen (N) utilizing a numerical model calibrated with data from mesocosms with and without mussels. A mortality threshold of 2 mg-N L−1 porewater NH4+ was selected based on a study that estimated 100% mortality of juvenile Lampsilis mussels exposed to 1.9 mg-N L−1NH4+ in equilibrium with 0.18 mg-N L−1 NH3. At the highest simulated mussel biomass (560 g m−2) and the lowest simulated influent water “food” concentration (0.1 mg-N L−1), the porewater NH4+ concentration after a 2,160 h timespan without mussels was 0.5 mg-N L−1 compared to 2.25 mg-N L−1 with mussels. Continuing these simulations while varying mussel biomass and N content yielded a mortality threshold contour that was essentially linear which contradicted the non-linear and non-monotonic relationship suggested by Strayer (2014). Our model suggests that mussels spatially focus nutrients from the overlying water to the sediments as evidenced by elevated porewater NH4+ in mesocosms with mussels. However, our previous work and the model utilized here show elevated concentrations of nitrite and nitrate in overlying waters as an indirect consequence of mussel activity. Even when the simulated overlying water food availability was quite low, the mortality threshold was reached at a mussel biomass of about 480 g m−2. At a food concentration of 10 mg-N L−1, the mortality threshold was reached at a biomass of about 250 g m−2. Our model suggests the mortality threshold for juvenile Lampsilis species could be exceeded at low mussel biomass if exposed for even a short time to the highly elevated total N loadings endemic to the agricultural Midwest.
Released January 05, 2017 00:00 EST
2016, Endangered Species Research (31) 337-382
A.F. Rees, J. Alfaro-Shigueto, P. C. R. Barata, K. A. Bjorndal, A.B. Bolten, J. Bourjeam, A.C. Broderick, L.M. Campbell, L. Cardona, C. Carreras, P. Casale, S.A. Ceriani, P.H. Dutton, T. Eguchi, A. Formia, M. M. P. B. Fuentes, W. J. Fuller, M. Girondot, M. H. Godfrey, M. Hamann, Kristen M. Hart, G.C. Hays, S. Hochscheid, M.P. Jensen, Y. Kaska, J.C. Mangel, J.A. Mortimer, E. Naro-Maciel, C.K.Y. Ng, W.J. Nichols, A.D. Phillott, R. D. Reina, O. Revuelta, G. Schofield, J.A. Seminoff, K. Shanker, J. Tomás, K.S. Van Houtan, J. van de Merwe, H.B. Vander Zanden, B. P. Wallace, K. R. Wedemeyer-Strombel, Thierry M. Work, B.J. Godley
In 2010, an international group of 35 sea turtle researchers refined an initial list of more than 200 research questions into 20 metaquestions that were considered key for management and conservation of sea turtles. These were classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies. To obtain a picture of how research is being focused towards these key questions, we undertook a systematic review of the peer-reviewed literature (2014 and 2015) attributing papers to the original 20 questions. In total, we reviewed 605 articles in full and from these 355 (59%) were judged to substantively address the 20 key questions, with others focusing on basic science and monitoring. Progress to answering the 20 questions was not uniform, and there were biases regarding focal turtle species, geographic scope and publication outlet. Whilst it offers some meaningful indications as to effort, quantifying peer-reviewed literature output is obviously not the only, and possibly not the best, metric for understanding progress towards informing key conservation and management goals. Along with the literature review, an international group based on the original project consortium was assigned to critically summarise recent progress towards answering each of the 20 questions. We found that significant research is being expended towards global priorities for management and conservation of sea turtles. Although highly variable, there has been significant progress in all the key questions identified in 2010. Undertaking this critical review has highlighted that it may be timely to undertake one or more new prioritizing exercises. For this to have maximal benefit we make a range of recommendations for its execution. These include a far greater engagement with social sciences, widening the pool of contributors and focussing the questions, perhaps disaggregating ecology and conservation.
Released January 05, 2017 00:00 EST
2016, Freshwater Mollusk Biology and Conservation (19) 56-68
Kathryn E. Perez, Rebecca L. Werren, Christopher A. Lynum, Levi A. Hartman, Gabor Majoros, Rebecca A. Cole
Bithynia tentaculata is believed to have been extirpated from North America during the last glacial maximum. It was reintroduced into North America via the Great Lakes basin in the 1800’s and has recently been expanding its geographic range. This snail serves as intermediate host for three trematodes that cause extensive recurring morbidity and mortality events in migratory water birds along the Mississippi River. Using twelve microsatellite loci for ~200 individual snails from 11 populations in North America and Europe, we examined one of the three major geographic regions from which founding populations into the Great Lakes typically originate. Our data supports a single recolonization of North America into the Great Lakes Basin followed by subsequent introduction events from the Great Lakes to other large watersheds in North America. However, additional watersheds in Europe require sampling to confirm this result. No populations with genetic signatures indicative of North American glacial relics were found. The initial invasion of North America was likely not from the Ponto-Caspian basin, the usual source of freshwater invasive species to the Laurentian Great Lakes.
Released January 05, 2017 00:00 EST
2016, Journal of Wildlife Diseases (52) 940-944
Anne Justice - Allen, Kathy Orr, Krysten L. Schuler, Carol Meteyer, Kyle McCarty, Kenneth Jacobson
Eight Bald Eagle (Haliaeetus leucocephalus) nestlings heavily infested with larval ticks were found in or under a nest near the confluence of the Verde and Salt rivers in Arizona in 2009-11. The 8-12-wk-old nestlings were slow to respond to stimuli and exhibited generalized muscle weakness or paresis of the pelvic limbs. Numerous cutaneous and subcutaneous hemorrhages were associated with sites of tick attachment. Ticks were identified as Argas radiatus and Argas ricei. Treatment with acaricides and infection with West Nile virus (WNV) may have confounded the clinical presentation in 2009 and 2010. However, WNV-negative birds exhibited similar signs in 2011. One nestling recovered from paresis within 36 h after the removal of all adult and larval ticks (>350) and was released within 3 wk. The signs present in the heavily infested Bald Eagle nestlings resembled signs associated with tick paralysis, a neurotoxin-mediated paralytic syndrome described in mammals, reptiles, and wild birds (though not eagles). Removal of the infested nest and construction of a nest platform in a different tree was necessary to break the cycle of infection. The original nesting pair constructed a new nest on the man-made platform and successfully fledged two Bald Eagles in 2012.
Released January 05, 2017 00:00 EST
2016, Journal of Coastal Research (Special Issue 76) 4-17
C. Wayne Wright, Christine Kranenburg, Timothy A. Battista, Christopher Parrish
The original National Aeronautics and Space Administration (NASA) Experimental Advanced Airborne Research
Lidar (EAARL), was extensively modified to increase the spatial sampling density and improve performance in
water ranging from 3–44 m. The new (EAARL-B) sensor features a 300% increase in spatial density, which was
achieved by optically splitting each laser pulse into 3 pulses spatially separated by 1.6 m along the flight track and
2.0 m across-track on the water surface when flown at a nominal altitude of 300 m. Improved depth capability was
achieved by increasing the total peak laser power by a factor of 10, and incorporating a new “deep-water” receiver,
optimized to exclusively receive refracted and scattered light from deeper water (15–44 m). Two clear-water
missions were conducted to determine the EAARL-B depth calibration coefficients. The calibration mission was
conducted over the U.S. Navy’s South Florida Testing Facility (SFTF), an established lidar calibration range located
in the coastal waters southeast of Fort Lauderdale, Florida. A second mission was conducted over Lang Bank, St.
Croix, U.S. Virgin Islands. The EAARL-B survey was spatially and temporally coincident with multibeam sonar
surveys conducted by the National Oceanic and Atmospheric Administration (NOAA) ship Nancy Foster. The
NOAA depth data range from 10–100 m, whereas the EAARL-B captured data from 0–41 m. Coefficients derived
from the SFTF calibration mission were used to correct the EAARL-B data from both missions. The resulting
calibrated EAARL-B data were then compared with the original reference dataset, a jet-ski-based single beam sonar
dataset from the SFTF site, and the deeper NOAA data from St. Croix. Additionally, EAARL-B depth accuracy was
evaluated by comparing the depth results to International Hydrographic Organization (IHO) standards. Results show
good agreement between the calibrated EAARL-B data and all three reference datasets, with 95% confidence levels
well within the maximum allowable total vertical uncertainty for IHO Order 1 surveys.
Released January 05, 2017 00:00 EST
2016, Water Resources Research (52) 9600-9620
Steven W. Hostetler, Jay R. Alder
We simulate the 1950–2010 water balance for the conterminous U.S. (CONUS) with a monthly water balance model (MWBM) using the 800 m Parameter-elevation Regression on Independent Slopes Model (PRISM) data set as model input. We employed observed snow and streamflow data sets to guide modification of the snow and potential evapotranspiration components in the default model and to evaluate model performance. Based on various metrics and sensitivity tests, the modified model yields reasonably good simulations of seasonal snowpack in the West (range of bias of ±50 mm at 68% of 713 SNOTEL sites), the gradients and magnitudes of actual evapotranspiration, and runoff (median correlation of 0.83 and median Nash-Sutcliff efficiency of 0.6 between simulated and observed annual time series at 1427 USGS gage sites). The model generally performs well along the Pacific Coast, the high elevations of the Basin and Range and over the Midwest and East, but not as well over the dry areas of the Southwest and upper Plains regions due, in part, to the apportioning of direct versus delayed runoff. Sensitivity testing and application of the MWBM to simulate the future water balance at four National Parks when driven by 30 climate models from the Climate Model Intercomparison Program Phase 5 (CMIP5) demonstrate that the model is useful for evaluating first-order, climate driven hydrologic change on monthly and annual time scales.
Released January 05, 2017 00:00 EST
2016, Quaternary Science Reviews (152) 49-59
David J. Ullman, Anders E. Carlson, Steven W. Hostetler, Peter U. Clark, Joshua Cuzzone, Glenn A. Milne, Kelsey Winsor, Marc A. Caffee
Despite elevated summer insolation forcing during the early Holocene, global ice sheets retained nearly half of their volume from the Last Glacial Maximum, as indicated by deglacial records of global mean sea level (GMSL). Partitioning the GMSL rise among potential sources requires accurate dating of ice-sheet extent to estimate ice-sheet volume. Here, we date the final retreat of the Laurentide Ice Sheet with 10Be surface exposure ages for the Labrador Dome, the largest of the remnant Laurentide ice domes during the Holocene. We show that the Labrador Dome deposited moraines during North Atlantic cold events at ∼10.3 ka, 9.3 ka and 8.2 ka, suggesting that these regional climate events helped stabilize the retreating Labrador Dome in the early Holocene. After Hudson Bay became seasonally ice free at ∼8.2 ka, the majority of Laurentide ice-sheet melted abruptly within a few centuries. We demonstrate through high-resolution regional climate model simulations that the thermal properties of a seasonally ice-free Hudson Bay would have increased Laurentide ice-sheet ablation and thus contributed to the subsequent rapid Labrador Dome retreat. Finally, our new 10Be chronology indicates full Laurentide ice-sheet had completely deglaciated by 6.7 ± 0.4 ka, which re quires that Antarctic ice sheets contributed 3.6–6.5 m to GMSL rise since 6.3–7.1 ka.
Released January 05, 2017 00:00 EST
2016, Journal of Coastal Research (Special Issue 76) 1-3
Dean B. Gesch, John C. Brock, Christopher E. Parrish, Jeffrey N. Rogers, C. Wayne Wright
Detailed knowledge of near-shore topography and bathymetry is required for many geospatial data applications in the coastal environment. New data sources and processing methods are facilitating development of seamless, regional-scale topobathymetric digital elevation models. These elevation models integrate disparate multi-sensor, multi-temporal topographic and bathymetric datasets to provide a coherent base layer for coastal science applications such as wetlands mapping and monitoring, sea-level rise assessment, benthic habitat mapping, erosion monitoring, and storm impact assessment. The focus of this special issue is on recent advances in the source data, data processing and integration methods, and applications of topobathymetric datasets.
Released January 04, 2017 00:00 EST
2017, North American Journal of Fisheries Management (37) 101-107
Wesley W. Bouska, David C. Glover, Kristen Bouska, James E. Garvey
Detecting nuisance species at low abundance or in newly established areas is critical to developing pest management strategies. Due to their sensitivity to disturbance and erratic jumping behavior, Silver Carp Hypophthalmichthys molitrix can be difficult to collect with traditional sampling methods. We compared catch per unit effort (CPUE) of all species from a Long Term Resource Monitoring (LTRM) electrofishing protocol to an experimental electrofishing technique designed to minimize Silver Carp evasion through tactical boat maneuvering and selective application of power. Differences in CPUE between electrofishing methods were detected for 2 of 41 species collected across 2 years of sampling at 20 sites along the Illinois River. The mean catch rate of Silver Carp using the experimental technique was 2.2 times the mean catch rate of the LTRM electrofishing technique; the increased capture efficiency at low relative abundance emphasizes the utility of this method for early detection. The experimental electrofishing also collected slightly larger Silver Carp (mean: 510.7 mm TL versus 495.2 mm TL), and nearly four times as many Silver Carp independently jumped into the boat during experimental transects. Novel sampling approaches, such as the experimental electrofishing technique used in this study, should be considered to increase probability of detection for aquatic nuisance species.
Released January 04, 2017 00:00 EST
2017, PLoS ONE (12) 1-17
Erik K. Hofmeister, Melissa Lund, Valerie I. Shearn-Bochsler, Christopher N. Balakrishnan
Since the introduction of West Nile virus (WNV) into North America in 1999 a number of passerine bird species have been found to play a role in the amplification of the virus. Arbovirus surveillance, observational studies and experimental studies have implicated passerine birds (songbirds, e.g., crows, American robins, house sparrows, and house finches) as significant reservoirs of WNV in North America, yet we lack a tractable passerine animal model for controlled studies of the virus. The zebra finch (Taeniopygia guttata) serves as a model system across a diversity of fields, and here we develop the zebra finch a songbird model for WNV. Like many natural hosts of WNV, we found that zebra finches developed sufficient viremia to serve as a competent host, yet in general resisted mortality from infection. In the Australian zebra finch (AZF) T. g. castanotis, we detected WNV in the majority of sampled tissues by 4 days post injection (dpi). However, WNV was not detected in tissues of sacrificed birds at 14 dpi, shortly after the development of detectable anti-WNV antibodies in the majority of birds indicating successful viral clearance. We compared susceptibility between the two zebra finch subspecies AZF and Timor zebra finch (TZF) T. g. guttata. Compared to AZF, WNV RNA was detected in a larger proportion of challenged TZF and molecular detection of virus in the serum of TZF was significantly higher than in AZF. Given the observed moderate host competence and disease susceptibility, we suggest that zebra finches are appropriate as models for the study of WNV and although underutilized in this respect, may be ideal models for the study of the many diseases carried and transmitted by songbirds.
Released January 04, 2017 00:00 EST
2017, Journal of Wildlife Diseases (53) 81-90
Jennifer R. Ballard, Randall M. Mickley, Samantha E.J. Gibbs, Chris Dwyer, Catherine Soos, N. Jane Harms, H. Grant Gilchrist, Jeffrey S. Hall, J Christian Franson, G. Randy Milton, Glen Parsons, Brad Allen, Jean-Francois Giroux, Stéphane Lair, Daniel G. Mead, John R. Fischer
Between 1998 and 2014, recurrent mortality events were reported in the Dresser's subspecies of the Common Eider (Somateria mollissima dresseri) on Cape Cod, Massachusetts, USA near Wellfleet Harbor. The early die-offs were attributed to parasitism and emaciation, but beginning in 2006 a suite of distinct lesions was observed concomitant with the isolation of a previously unknown RNA virus. This novel pathogen was identified as an orthomyxovirus in the genus Quaranjavirus and was named Wellfleet Bay virus (WFBV). To assess evidence of exposure to this virus in Common Eiders, we conducted a longitudinal study of the prevalence of WFBV antibodies at multiple locations from 2004–14; we collected 2,258 serum samples from six locations and analyzed each using a microneutralization assay. Results corroborate the emergence of WFBV in 2006 based on the first detection of antibodies in that year. Significantly higher prevalence was detected in Common Eiders sampled in Massachusetts compared to those in Maine, Nova Scotia, and Québec. For birds breeding and wintering in Massachusetss, viral exposure varied by age, sex, and season of sampling, and prevalence by season and sex were highly interrelated with greater numbers of antibody-positive males in the autumn and females in the spring. No evidence of viral exposure was detected in the Northern subspecies (Somateria mollissima borealis). Among the locations sampled, Massachusetts appears to be the epicenter of Common Eider exposure to WFBV. Further research is warranted to understand the factors controlling the epidemiology of WFBV in Massachussetts, including those that may be limiting geographic expansion of this virus.
Released January 04, 2017 00:00 EST
2016, Infection, Genetics and Evolution (45) 297-302
Amy J. Vogler, Roxanne Nottingham, Joseph D. Busch, Jason W. Sahl, Megan M. Shuey, Jeffrey T. Foster, James M. Schupp, Susan Smith, Tonie E. Rocke, Paul Klein, David M. Wagner
Underlying mutation rates and other evolutionary forces shape the population structure of bacteria in nature. Although easily overlooked, similar forces are at work in the laboratory and may influence observed mutations. Here, we investigated tissue samples and Yersinia pestis isolates from a rodent laboratory challenge with strain CO92 using whole genome sequencing and multi-locus variable-number tandem repeat (VNTR) analysis (MLVA). We identified six VNTR mutations that were found to have occurred in vitro during laboratory cultivation rather than in vivo during the rodent challenge. In contrast, no single nucleotide polymorphism (SNP) mutations were observed, either in vivo or in vitro. These results were consistent with previously published mutation rates and the calculated number of Y. pestis generations that occurred during the in vitro versus the in vivo portions of the experiment. When genotyping disease outbreaks, the potential for in vitro mutations should be considered, particularly when highly variable genetic markers such as VNTRs are used.
Released January 03, 2017 00:00 EST
2017, Ecological Monographs
Michael J. Osland, Laura Feher, Kereen Griffith, Kyle C. Cavanaugh, Nicholas M. Enwright, Richard H. Day, Camille L. Stagg, Ken W. Krauss, Rebecca J. Howard, James B. Grace, Kerrylee Rogers
Mangrove forests are highly productive tidal saline wetland ecosystems found along sheltered tropical and subtropical coasts. Ecologists have long assumed that climatic drivers (i.e., temperature and rainfall regimes) govern the global distribution, structure, and function of mangrove forests. However, data constraints have hindered the quantification of direct climate-mangrove linkages in many parts of the world. Recently, the quality and availability of global-scale climate and mangrove data have been improving. Here, we used these data to better understand the influence of air temperature and rainfall regimes upon the distribution, abundance, and species richness of mangrove forests. Although our analyses identify global-scale relationships and thresholds, we show that the influence of climatic drivers is best characterized via regional range limit-specific analyses. We quantified climatic controls across targeted gradients in temperature and/or rainfall within 14 mangrove distributional range limits. Climatic thresholds for mangrove presence, abundance, and species richness differed among the 14 studied range limits. We identified minimum temperature-based thresholds for range limits in eastern North America, eastern Australia, New Zealand, eastern Asia, eastern South America, and southeast Africa. We identified rainfall-based thresholds for range limits in western North America, western Gulf of Mexico, western South America, western Australia, Middle East, northwest Africa, east central Africa, and west central Africa. Our results show that in certain range limits (e.g., eastern North America, western Gulf of Mexico, eastern Asia), winter air temperature extremes play an especially important role. We conclude that rainfall and temperature regimes are both important in western North America, western Gulf of Mexico, and western Australia. With climate change, alterations in temperature and rainfall regimes will affect the global distribution, abundance, and diversity of mangrove forests. In general, warmer winter temperatures are expected to allow mangroves to expand poleward at the expense of salt marshes. However, dispersal and habitat availability constraints may hinder expansion near certain range limits. Along arid and semi-arid coasts, decreases or increases in rainfall are expected to lead to mangrove contraction or expansion, respectively. Collectively, our analyses quantify climate-mangrove linkages and improve our understanding of the expected global- and regional-scale effects of climate change upon mangrove forests.
Released January 03, 2017 00:00 EST
2017, Sedimentology
Michael V. W. Cuttler, Ryan J. Lowe, James L. Falter, Daniel D. Buscombe
Most techniques for estimating settling velocities of natural particles have been developed for siliciclastic sediments. Therefore, to understand how these techniques apply to bioclastic environments, measured settling velocities of bioclastic sedimentary deposits sampled from a nearshore fringing reef in Western Australia were compared with settling velocities calculated using results from several common grain-size analysis techniques (sieve, laser diffraction and image analysis) and established models. The effects of sediment density and shape were also examined using a range of density values and three different models of settling velocity. Sediment density was found to have a significant effect on calculated settling velocity, causing a range in normalized root-mean-square error of up to 28%, depending upon settling velocity model and grain-size method. Accounting for particle shape reduced errors in predicted settling velocity by 3% to 6% and removed any velocity-dependent bias, which is particularly important for the fastest settling fractions. When shape was accounted for and measured density was used, normalized root-mean-square errors were 4%, 10% and 18% for laser diffraction, sieve and image analysis, respectively. The results of this study show that established models of settling velocity that account for particle shape can be used to estimate settling velocity of irregularly shaped, sand-sized bioclastic sediments from sieve, laser diffraction, or image analysis-derived measures of grain size with a limited amount of error. Collectively, these findings will allow for grain-size data measured with different methods to be accurately converted to settling velocity for comparison. This will facilitate greater understanding of the hydraulic properties of bioclastic sediment which can help to increase our general knowledge of sediment dynamics in these environments.
Released January 03, 2017 00:00 EST
2017, Environmental Modelling and Software 1-18
Daniel D. Buscombe
In recent years, lightweight, inexpensive, vessel-mounted ‘recreational grade’ sonar systems have rapidly grown in popularity among aquatic scientists, for swath imaging of benthic substrates. To promote an ongoing ‘democratization’ of acoustical imaging of shallow water environments, methods to carry out geometric and radiometric correction and georectification of sonar echograms are presented, based on simplified models for sonar-target geometry and acoustic backscattering and attenuation in shallow water. Procedures are described for automated removal of the acoustic shadows, identification of bed-water interface for situations when the water is too turbid or turbulent for reliable depth echosounding, and for automated bed substrate classification based on singlebeam full-waveform analysis. These methods are encoded in an open-source and freely-available software package, which should further facilitate use of recreational-grade sidescan sonar, in a fully automated and objective manner. The sequential correction, mapping, and analysis steps are demonstrated using a data set from a shallow freshwater environment.
Released January 03, 2017 00:00 EST
2017, Hydrological Processes
Sarah M. Stackpoole, Edward G. Stets, David W. Clow, Douglas A. Burns, George R. Aiken, Brent T. Aulenbach, Irena F. Creed, Robert M. Hirsch, Hjalmar Laudon, Brian Pellerin, Robert G. Striegl
Recent studies have found insignificant or decreasing trends in time-series dissolved organic carbon (DOC) datasets, questioning the assumption that long-term DOC concentrations in surface waters are increasing in response to anthropogenic forcing, including climate change, land use, and atmospheric acid deposition. We used the weighted regressions on time, discharge, and season (WRTDS) model to estimate annual flow-normalized concentrations and fluxes to determine if changes in DOC quantity and quality signal anthropogenic forcing at 10 locations in the Mississippi River Basin. Despite increases in agriculture and urban development throughout the basin, net increases in DOC concentration and flux were significant at only 3 of 10 sites from 1997 to 2013 and ranged between −3.5% to +18% and −0.1 to 19%, respectively. Positive shifts in DOC quality, characterized by increasing specific ultraviolet absorbance at 254 nm, ranged between +8% and +45%, but only occurred at one of the sites with significant DOC quantity increases. Basinwide reductions in atmospheric sulfate deposition did not result in large increases in DOC either, likely because of the high buffering capacity of the soil. Hydroclimatic factors including annual discharge, precipitation, and temperature did not significantly change during the 17-year timespan of this study, which contrasts with results from previous studies showing significant increases in precipitation and discharge over a century time scale. Our study also contrasts with those from smaller catchments, which have shown stronger DOC responses to climate, land use, and acidic deposition. This temporal and spatial analysis indicated that there was a potential change in DOC sources in the Mississippi River Basin between 1997 and 2013. However, the overall magnitude of DOC trends was not large, and the pattern in quantity and quality increases for the 10 study sites was not consistent throughout the basin.
Released January 03, 2017 00:00 EST
2017, Rangeland Ecology and Management (70) 25-38
Peter S. Coates, Brian Prochazka, Mark Ricca, K. Ben Gustafson, Pilar T. Ziegler, Michael L. Casazza
In sagebrush (Artemisia spp.) ecosystems, encroachment of pinyon (Pinus spp.) and juniper (Juniperus spp.; hereafter, “pinyon-juniper”) trees has increased dramatically since European settlement. Understanding the impacts of this encroachment on behavioral decisions, distributions, and population dynamics of greater sage-grouse (Centrocercus urophasianus) and other sagebrush obligate species could help benefit sagebrush ecosystem management actions. We employed a novel two-stage Bayesian model that linked avoidance across different levels of pinyon-juniper cover to sage-grouse survival. Our analysis relied on extensive telemetry data collected across 6 yr and seven subpopulations within the Bi-State Distinct Population Segment (DPS), on the border of Nevada and California. The first model stage indicated avoidance behavior for all canopy cover classes on average, but individual grouse exhibited a high degree of heterogeneity in avoidance behavior of the lowest cover class (e.g., scattered isolated trees). The second stage modeled survival as a function of estimated avoidance parameters and indicated increased survival rates for individuals that exhibited avoidance of the lowest cover class. A post hoc frailty analysis revealed the greatest increase in hazard (i.e., mortality risk) occurred in areas with scattered isolated trees consisting of relatively high primary plant productivity. Collectively, these results provide clear evidence that local sage-grouse distributions and demographic rates are influenced by pinyon-juniper, especially in habitats with higher primary productivity but relatively low and seemingly benign tree cover. Such areas may function as ecological traps that convey attractive resources but adversely affect population vital rates. To increase sage-grouse survival, our model predictions support reducing actual pinyon-juniper cover as low as 1.5%, which is lower than the published target of 4.0%. These results may represent effects of pinyon-juniper cover in areas with similar ecological conditions to those of the Bi-State DPS, where populations occur at relatively high elevations and pinyon-juniper is abundant and widespread.
Released January 01, 2017 00:00 EST
2017, Book chapter, Reference Module in Earth Systems and Environmental Sciences
Dominique Bachelet, Ken Ferschweiler, Tim Sheehan, Barry Baker, Benjamin M. Sleeter, Zhiliang Zhu
The MC2 model projects an overall increase in carbon capture in conterminous United States during the 21st century while also simulating a rise in fire causing much carbon loss. Carbon sequestration in soils is critical to prevent carbon losses from future disturbances, and we show that natural ecosystems store more carbon belowground than managed systems do. Natural and human-caused disturbances affect soil processes that shape ecosystem recovery and competitive interactions between native, exotics, and climate refugees. Tomorrow's carbon budgets will depend on how land use, natural disturbances, and climate variability will interact and affect the balance between carbon capture and release.
Released January 01, 2017 00:00 EST
2017, Journal of Coastal Research (33) 39-55
Jonathan Warrick, Andy Ritchie, Gabrielle Adelman, Ken Adelman, Patrick W Limber
Oblique aerial photograph surveys are commonly used to document coastal landscapes. Here it is shown that adequate overlap may exist in these photographic records to develop topographic models with Structure-from-Motion (SfM) photogrammetric techniques. Using photographs of Fort Funston, California, from the California Coastal Records Project, imagery were combined with ground control points in a four-dimensional analysis that produced topographic point clouds of the study area’s cliffs for 5 years spanning 2002 to 2010. Uncertainty was assessed by comparing point clouds with airborne LIDAR data, and these uncertainties were related to the number and spatial distribution of ground control points used in the SfM analyses. With six or more ground control points, the root mean squared errors between the SfM and LIDAR data were less than 0.30 m (minimum 1⁄4 0.18 m), and the mean systematic error was less than 0.10 m. The SfM results had several benefits over traditional airborne LIDAR in that they included point coverage on vertical- to-overhanging sections of the cliff and resulted in 10–100 times greater point densities. Time series of the SfM results revealed topographic changes, including landslides, rock falls, and the erosion of landslide talus along the Fort Funston beach. Thus, it was concluded that SfM photogrammetric techniques with historical oblique photographs allow for the extraction of useful quantitative information for mapping coastal topography and measuring coastal change. The new techniques presented here are likely applicable to many photograph collections and problems in the earth sciences.
Released January 01, 2017 00:00 EST
2017, Ecosystems (20) 104-129
Laura G Perry, Patrick B. Shafroth, Steven Perakis
Riparian forest soils can be highly dynamic, due to frequent fluvial disturbance, erosion, and sediment deposition, but effects of dams on riparian soils are poorly understood. We examined soils along toposequences within three river segments located upstream, between, and downstream of two dams on the Elwha River to evaluate relationships between riparian soil development and forest age, succession, and channel proximity, explore dam effects on riparian soils, and provide a baseline for the largest dam removal in history. We found that older, later-successional forests and geomorphic surfaces contained soils with finer texture and greater depth to cobble, supporting greater forest floor mass, mineral soil nutrient levels, and cation exchange. Forest stand age was a better predictor than channel proximity for many soil characteristics, though elevation and distance from the channel were often also important, highlighting how complex interactions between fluvial disturbance, sediment deposition, and biotic retention regulate soil development in this ecosystem. Soils between the dams, and to a lesser extent below the lower dam, had finer textures and higher mineral soil carbon, nitrogen, and cation exchange than above the dams. These results suggested that decreased fluvial disturbance below the dams, due to reduced sediment supply and channel stabilization, accelerated soil development. In addition, reduced sediment supply below the dams may have decreased soil phosphorus. Soil δ15N suggested that salmon exclusion by the dams had no discernable effect on nitrogen inputs to upstream soils. Recent dam removal may alter riparian soils further, with ongoing implications for riparian ecosystems.
Released January 01, 2017 00:00 EST
2016, Journal of Geophysical Research B: Solid Earth (121) 6722-6740
Joan S. Gomberg, D.C. Agnew, S.Y. Schwartz
We present alternative source models for very low frequency (VLF) events, previously inferred to be radiation from individual slow earthquakes that partly fill the period range between slow slip events lasting thousands of seconds and low-frequency earthquakes (LFE) with durations of tenths of a second. We show that VLF events may emerge from bandpass filtering a sum of clustered, shorter duration, LFE signals, believed to be the components of tectonic tremor. Most published studies show VLF events occurring concurrently with tremor bursts and LFE signals. Our analysis of continuous data from Costa Rica detected VLF events only when tremor was also occurring, which was only 7% of the total time examined. Using analytic and synthetic models, we show that a cluster of LFE signals produces the distinguishing characteristics of VLF events, which may be determined by the cluster envelope. The envelope may be diagnostic of a single, dynamic, slowly slipping event that propagates coherently over kilometers or represents a narrowly band-passed version of nearly simultaneous arrivals of radiation from slip on multiple higher stress drop and/or faster propagating slip patches with dimensions of tens of meters (i.e., LFE sources). Temporally clustered LFE sources may be triggered by single or multiple distinct aseismic slip events or represent the nearly simultaneous chance occurrence of background LFEs. Given the nonuniqueness in possible source durations, we suggest it is premature to draw conclusions about VLF event sources or how they scale.
Released January 01, 2017 00:00 EST
2016, Scientific Reports (6) 1-11
D. Ferreira-Martins, Stephen McCormick, A. Campos, M. Lopes-Marques, H. Osorio, J. Coimbra, L.F.C. Castro, Jonthan M Wilson
Carbonic anhydrase plays a key role in CO2 transport, acid-base and ion regulation and metabolic processes in vertebrates. While several carbonic anhydrase isoforms have been identified in numerous vertebrate species, basal lineages such as the cyclostomes have remained largely unexamined. Here we investigate the repertoire of cytoplasmic carbonic anhydrases in the sea lamprey (Petromyzon marinus), that has a complex life history marked by a dramatic metamorphosis from a benthic filter-feeding ammocoete larvae into a parasitic juvenile which migrates from freshwater to seawater. We have identified a novel carbonic anhydrase gene (ca19) beyond the single carbonic anhydrase gene (ca18) that was known previously. Phylogenetic analysis and synteny studies suggest that both carbonic anhydrase genes form one or two independent gene lineages and are most likely duplicates retained uniquely in cyclostomes. Quantitative PCR of ca19 and ca18 and protein expression in gill across metamorphosis show that the ca19 levels are highest in ammocoetes and decrease during metamorphosis while ca18 shows the opposite pattern with the highest levels in post-metamorphic juveniles. We propose that a unique molecular switch occurs during lamprey metamorphosis resulting in distinct gill carbonic anhydrases reflecting the contrasting life modes and habitats of these life-history stages.
Released January 01, 2017 00:00 EST
2016, Southeastern Naturalist (15) 89-102
Bryan Falk, Raymond W. Snow, Robert Reed
Citizen-science programs have the potential to contribute to the management of invasive species, including Python molurus bivittatus (Burmese Python) in Florida. We characterized citizen-science–generated Burmese Python information from Everglades National Park (ENP) to explore how citizen science may be useful in this effort. As an initial step, we compiled and summarized records of Burmese Python observations and removals collected by both professional and citizen scientists in ENP during 2000–2014 and found many patterns of possible significance, including changes in annual observations and in demographic composition after a cold event. These patterns are difficult to confidently interpret because the records lack search-effort information, however, and differences among years may result from differences in search effort. We began collecting search-effort information in 2014 by leveraging an ongoing citizen-science program in ENP. Program participation was generally low, with most authorized participants in 2014 not searching for the snakes at all. We discuss the possible explanations for low participation, especially how the low likelihood of observing pythons weakens incentives to search. The monthly rate of Burmese Python observations for 2014 averaged ~1 observation for every 8 h of searching, but during several months, the rate was 1 python per >40 h of searching. These low observation-rates are a natural outcome of the snakes’ low detectability—few Burmese Pythons are likely to be observed even if many are present. The general inaccessibility of the southern Florida landscape also severely limits the effectiveness of using visual searches to find and remove pythons for the purposes of population control. Instead, and despite the difficulties in incentivizing voluntary participation, the value of citizen-science efforts in the management of the Burmese Python population is in collecting search-effort information.
Released January 01, 2017 00:00 EST
2016, Book chapter, Slope safety preparedness for impact of climate change
Jeffrey A. Coe
No abstract available.
Released January 01, 2017 00:00 EST
2016, Journal of Applied Ichthyology (32) 87-161
Kenneth J. Sulak, F Parauka, W. Todd Slack, T Ruth, Michael Randall, K Luke, M. F Mette, M. E Price
The Gulf Sturgeon, Acipenser oxyrinchus desotoi, is an anadromous species of Acipenseridae and native to North America. It currently inhabits and spawns in the upper reaches of seven natal rivers along the northern coast of the Gulf of Mexico from the Suwannee River, Florida, to the Pearl River, Louisiana, during spring to autumn. Next to the Alligator Gar (Atractosteus spatula), the Gulf Sturgeon is currently the largest fish species occurring in U.S. Gulf Coast rivers, attaining a length of 2.35 m and weights exceeding 135 kg, but historically attained a substantially larger size. Historically, the spawning populations existed in additional rivers from which the species has been wholly or nearly extirpated, such as the Mobile and Ochlockonee rivers, and possibly the Rio Grande River. Most Gulf Sturgeon populations were decimated by unrestricted commercial fishing between 1895–1910. Subsequently most populations remained unrecovered or extirpated due to continued harvest until the 1970s–1980s, and the construction of dams blocking access to ancestral upriver spawning grounds. Late 20th Century harvest bans and net bans enacted by the several Gulf Coast states have stabilized several populations and enabled the Suwannee River population to rebound substantially and naturally. Hatchery supplementation has not been necessary in this regard to date. Sturgeon are resilient and adaptable fishes with a geological history of 150 million years. Research undertaken since the 1970s has addressed many aspects of Gulf Sturgeon life history, reproduction, migration, population biology, habitat requirements, and other aspects of species biology. However, many knowledge gaps remain, prominently including the life history of early developmental stages in the first year of life. Natural population recovery is evident for the Suwannee River population, but seems promising as well for at least four other populations. The Pascagoula and Pearl River populations face a challenging future due a combination of natural and anthropogenic factors. These two populations, and perhaps the Escambia River population, are particularly vulnerable to periodic mass mortality due to major stochastic events including hurricanes, flooding, hypoxia, and toxic spills. The present manuscript provides a comprehensive synthesis of knowledge regarding the Gulf Sturgeon at the organismal and population levels, identifying knowledge gaps as priorities for future research. Topics not treated in the present synthesis include morphology, internal biology, physiology, and endocrinology. Topics only briefly treated include parasites and diseases, contaminants, and sturgeon aquaculture.
Released January 01, 2017 00:00 EST
2016, Ecosphere (7)
Erin Shanahan, Kathryn M. Irvine, David P. Thoma, Siri K. Wilmoth, Andrew Ray, Kristin Legg, Henry Shovic
Whitebark pine (Pinus albicaulis) forests in the western United States have been adversely affected by an exotic pathogen (Cronartium ribicola, causal agent of white pine blister rust), insect outbreaks (Dendroctonus ponderosae, mountain pine beetle), and drought. We monitored individual trees from 2004 to 2013 and characterized stand-level biophysical conditions through a mountain pine beetle epidemic in the Greater Yellowstone Ecosystem. Specifically, we investigated associations between tree-level variables (duration and location of white pine blister rust infection, presence of mountain pine beetle, tree size, and potential interactions) with observations of individual whitebark pine tree mortality. Climate summaries indicated that cumulative growing degree days in years 2006–2008 likely contributed to a regionwide outbreak of mountain pine beetle prior to the observed peak in whitebark mortality in 2009. We show that larger whitebark pine trees were preferentially attacked and killed by mountain pine beetle and resulted in a regionwide shift to smaller size class trees. In addition, we found evidence that smaller size class trees with white pine blister rust infection experienced higher mortality than larger trees. This latter finding suggests that in the coming decades white pine blister rust may become the most probable cause of whitebark pine mortality. Our findings offered no evidence of an interactive effect of mountain pine beetle and white pine blister rust infection on whitebark pine mortality in the Greater Yellowstone Ecosystem. Interestingly, the probability of mortality was lower for larger trees attacked by mountain pine beetle in stands with higher evapotranspiration. Because evapotranspiration varies with climate and topoedaphic conditions across the region, we discuss the potential to use this improved understanding of biophysical influences on mortality to identify microrefugia that might contribute to successful whitebark pine conservation efforts. Using tree-level observations, the National Park Service-led Greater Yellowstone Interagency Whitebark Pine Long-term Monitoring Program provided important ecological insight on the size-dependent effects of white pine blister rust, mountain pine beetle, and water availability on whitebark pine mortality. This ongoing monitoring campaign will continue to offer observations that advance conservation in the Greater Yellowstone Ecosystem.
Released January 01, 2017 00:00 EST
2016, Ecology and Evolution (6) 7004-7014
Hannu Pöysä, Jukka Rintala, Douglas H. Johnson, Jukka Kauppinen, Esa Lammi, Thomas D. Nudds, Veli-Matti Väänänen
Density dependence, population regulation, and variability in population size are fundamental population processes, the manifestation and interrelationships of which are affected by environmental variability. However, there are surprisingly few empirical studies that distinguish the effect of environmental variability from the effects of population processes. We took advantage of a unique system, in which populations of the same duck species or close ecological counterparts live in highly variable (north American prairies) and in stable (north European lakes) environments, to distinguish the relative contributions of environmental variability (measured as between-year fluctuations in wetland numbers) and intraspecific interactions (density dependence) in driving population dynamics. We tested whether populations living in stable environments (in northern Europe) were more strongly governed by density dependence than populations living in variable environments (in North America). We also addressed whether relative population dynamical responses to environmental variability versus density corresponded to differences in life history strategies between dabbling (relatively “fast species” and governed by environmental variability) and diving (relatively “slow species” and governed by density) ducks. As expected, the variance component of population fluctuations caused by changes in breeding environments was greater in North America than in Europe. Contrary to expectations, however, populations in more stable environments were not less variable nor clearly more strongly density dependent than populations in highly variable environments. Also, contrary to expectations, populations of diving ducks were neither more stable nor stronger density dependent than populations of dabbling ducks, and the effect of environmental variability on population dynamics was greater in diving than in dabbling ducks. In general, irrespective of continent and species life history, environmental variability contributed more to variation in species abundances than did density. Our findings underscore the need for more studies on populations of the same species in different environments to verify the generality of current explanations about population dynamics and its association with species life history.
Released January 01, 2017 00:00 EST
2016, Proceedings of the National Academy of Sciences of the United States of America (113) 11889-11894
Roland A. Knapp, Gary M. Fellers, Patrick M. Kleeman, David A. W. Miller, Vance T. Vrendenburg, Erica Bree Rosenblum, Cheryl J. Briggs
Amphibians are one of the most threatened animal groups, with 32% of species at risk for extinction. Given this imperiled status, is the disappearance of a large fraction of the Earth’s amphibians inevitable, or are some declining species more resilient than is generally assumed? We address this question in a species that is emblematic of many declining amphibians, the endangered Sierra Nevada yellow-legged frog (Rana sierrae). Based on >7,000 frog surveys conducted across Yosemite National Park over a 20-y period, we show that, after decades of decline and despite ongoing exposure to multiple stressors, including introduced fish, the recently emerged disease chytridiomycosis, and pesticides, R. sierrae abundance increased sevenfold during the study and at a rate of 11% per year. These increases occurred in hundreds of populations throughout Yosemite, providing a rare example of amphibian recovery at an ecologically relevant spatial scale. Results from a laboratory experiment indicate that these increases may be in part because of reduced frog susceptibility to chytridiomycosis. The disappearance of nonnative fish from numerous water bodies after cessation of stocking also contributed to the recovery. The large-scale increases in R. sierrae abundance that we document suggest that, when habitats are relatively intact and stressors are reduced in their importance by active management or species’ adaptive responses, declines of some amphibians may be partially reversible, at least at a regional scale. Other studies conducted over similarly large temporal and spatial scales are critically needed to provide insight and generality about the reversibility of amphibian declines at a global scale.
Released January 01, 2017 00:00 EST
2016, Zootaxa (4208) 61-76
Paul M. Oliver, Jonathan R. Clegg, Robert N. Fisher, Stephen J. Richards, Peter N. Taylor, Merlijn M. T. Jocque
The East Melanesian Islands have been a focal area for research into island biogeography and community ecology. However, previously undescribed and biogeographically significant new species endemic to this region continue to be discovered. Here we describe a phylogenetically distinct (~20% divergence at the mitochondrial ND2 gene) and biogeographically disjunct new species of gecko in the genus Gehyra, from the Admiralty and St Matthias Islands. Gehyra rohan sp. nov. can be distinguished from all congeners by the combination of its very large size, ring of bright orange scales around the eye, moderate degree of lateral folding on the limbs and body, and aspects of head, body and tail scalation. Molecular data indicate mid to late Miocene divergence of the new species from nearest relatives occurring nearly 2000 kilometres away in Vanuatu and Fiji. Large Gehyra have not been recorded on the intervening large islands of the Bismark Archipelago (New Britain and New Ireland) and the Solomon Islands, suggesting this dispersal pre-dated the current configuration of these islands, extinction in intervening regions, or potentially elements of both. Conversely, low genetic divergence between disjunct samples on Manus and Mussau implies recent overseas dispersal via either natural or anthropogenic means.
Released January 01, 2017 00:00 EST
2016, Ecological Restoration (34) 273-276
Raymond Finocchiaro, Dave A. Azure, Michael A. Vargo
This article discussing the use of a new method and approach for closing tile for hydrological restorations without removal of the tile pipe and allows for more flexibility in restoration design.
Released January 01, 2017 00:00 EST
2016, Conference Paper, Proceedings of the American Society for Engineering Management 2016
Bonnie Wilt, Suzanna K. Long, Thomas G. Shoberg
The term “resilience” is ubiquitous in technical literature; it appears in numerous forms, such as resilience, resiliency, or resilient, and each use may have a different definition depending on the interpretation of the writer. This creates difficulties in understanding what is meant by ‘resilience’ in any given use case, especially in discussions of interdisciplinary research. To better understand this problem, this research constructs a preliminary integrative literature review to map different definitions, applications and calculation methods of resilience invoked within critical infrastructure applications. The preliminary review uses a State-of-the-Art Matrix (SAM) analysis to characterize differences in definition across disciplines and between regions. Qualifying the various usages of resilience will produce a greater precision in the literature and a deeper insight into types of data required for its evaluation, particularly with respect to critical infrastructure calculations and how such data may be analyzed. Results from this SAM analysis will create a framework of key concepts as part of the most common applications for “resilient critical infrastructure” modeling.
Released January 01, 2017 00:00 EST
2016, Geological Society of America Memorials (45) 19-25
Charles R. Bacon
Robert L. Smith, renowned volcanologist and distinguished scientist with the U.S. Geological Survey (USGS), was a world authority on ash-flow tuffs, silicic volcanism, and caldera structures. Bob died peacefully in Sacramento, California, June 17, 2016, a few days short of his ninety-sixth birthday. His publications on ash flows and their deposits brought about an international revolution in understanding of explosive silicic volcanism and, in his fifty-year career, he profoundly influenced USGS programs and countless scientists.
Released January 01, 2017 00:00 EST
2016, Technical Report HCSU-079
Eben Paxton, Rachelle McLaughlin, Stephanie Levins, Eric VanderWerf, Nolan Lancaster
We banded birds in Hakalau Forest National Wildlife Refuge from 2012 to 2016, collecting photographs of birds and making detailed observations on coloration, morphology, and molting patterns. While we believe the criteria in this guide are applicable to forest birds across Hawai’i Island, as well as on other Hawaiian islands for ‘Apapane, ‘I‘iwi, and Hawai‘i ‘Amakihi, certain characteristics such as morphometrics may vary across populations, and users should verify the guide’s criteria with other available field data.
Released January 01, 2017 00:00 EST
2016, Estuaries and Coasts (39) 1735-1745
B. Konar, K. Iken, H. Coletti, Daniel H. Monson, Ben P. Weitzman
Rocky intertidal communities are structured by local environmental drivers, which can be dynamic, fluctuating on various temporal scales, or static and not greatly varying across years. We examined the role of six static drivers (distance to freshwater, tidewater glacial presence, wave exposure, fetch, beach slope, and substrate composition) on intertidal community structure across the northern Gulf of Alaska. We hypothesized that community structure is less similar at the local scale compared with the regional scale, coinciding with static drivers being less similar on smaller than larger scales. We also hypothesized that static attributes mainly drive local biological community structure. For this, we surveyed five to six sites in each of the six regions in the mid and low intertidal strata. Across regions, static attributes were not consistently different and only small clusters of sites had similar attributes. Additionally, intertidal communities were less similar on the site compared with the region level. These results suggest that these biological communities are not strongly influenced by the local static attributes measured in this study. An alternative explanation is that static attributes among our regions are not different enough to influence the biological communities. This lack of evidence for a strong static driver may be a result of our site selection, which targeted rocky sheltered communities. This suggests that this habitat may be ideal to examine the influence of dynamic drivers. We recommend that future analyses of dynamic attributes may best be performed after analyses have demonstrated that sites do not differ in static attributes.
Released January 01, 2017 00:00 EST
1989, Environmental Geology and Water Sciences (14) 81-92
K. S. Johnson
The Wink Sink, in Winkler County, Texas, is a collapse feature that formed in June 1980 when an underground dissolution cavity migrated upward by successive roof failures until it breached the land surface. The original cavity developed in the Permian Salado Formation salt beds more than 400 m (1,300 ft) below ground level. Natural dissolution of salt occurred in the vicinity of the Wink Sink in several episodes that began as early as Salado time and recurred in later Permian, Triassic, and Cenozoic times. Although natural dissolution occurred in the past below the Wink Sink, it appears likely that the dissolution cavity and resultant collapse described in this report were influenced by petroleum-production activity in the immediate area. Drilling, completion, and plugging procedures used on an abandoned oil well at the site of the sink appear to have created a conduit that enabled water to circulate down the borehole and dissolve the salt. When the dissolution cavity became large enough, the roof failed and the overlying rocks collapsed into the cavity. Similar collapse features exist where underground salt beds have been intentionally dissolved during solution mining or accidentally dissolved as a result of petroleum-production activity. ?? 1989 Springer-Verlag New York Inc.
Released January 01, 2017 00:00 EST
1985, Report, United States Geological Survey Yearbook, Fiscal Year 1984
Ted Arnow
The Great Salt Lake rose 5.0 feet from September 25,1983, to July 1, 1984, the second largest seasonal rise on record since 1847. The maximum seasonal rise was observed the previous year when the lake rose 5.1 feet from September 18,1982, to June 30,1983. The lake declined only 0.5 foot during summer 1983; thus, the net rise from September 18,1982, to July 1,1984, was 9.6 feet. By comparison, the previously recorded maximum net rise over a similar period of time was 4.75 feet from 1970 to 1972.
Released January 01, 2017 00:00 EST
1980, Cooperative Investigations Report 19
L.R. Herbert, R.B. Garrett, E.C. Gerhart, Judy I. Steiger, Cynthia L. Appel, V.L. Jensen, Michael Enright, S.K. Dubois, D.C. Emett, A.I. Guhman, L.J. Neff, L.G. Sultz, G.W. Sandberg
This is the seventeenth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties to keep abreast of changing ground-water conditions.
This report, like the others in the series, contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
This report includes individual discussions of selected major areas of ground-water withdrawal in the State for the calendar year 1979. Water-level fluctuations, however, are described for the period spring 1979 to spring 1980. Much of the data used in this report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1979, Cooperative Investigations Report 18
Don Price, W.N. Jibson, P. Kay Contratto, R.W. Mower, Judy I. Steiger, V.L. Jensen, M.D. ReMillard, D.C. Emett, C.T. Sumison, P.A. Carroll, L.J. Neff, G.W. Sandberg, L.R. Herbert
This report is the sixteenth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties to keep abreast of changing ground-water conditions.
This report, like the others in the series, contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
This report includes individual discussions of selected major areas of ground-water withdrawal in the State for the calendar year 1978. Water-level fluctuations, however, are described for the period spring 1978 to spring 1979. Much of the data used in this report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1978, Cooperative Investigations Report 17
Joseph S. Gates, W.N. Jibson, L.R. Herbert, R.W. Mower, A.C. Razem, R.M. Cordova, V.L. Jensen, M.D. ReMillard, D.C. Emett, C.T. Sumison, P.A. Carroll, M.J. DeGrand, G.W. Sandberg
This report is the fifteenth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties to keep abreast of changing ground-water conditions.
This report, like the others (see References, p. 13), contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
This report includes individual discussions of selected major areas of ground-water withdrawal in the State for the calendar year 1977. Water-level fluctuations, however, are described for the period spring 1977 to spring 1978. Much of the data used in this report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1977, Cooperative Investigations Report 16
E.L. Bolke, W.N. Jibson, R.W. Mower, A.C. Razem, R.M. Cordova, V.L. Jensen, M.D. ReMillard, G.W. Sandberg, C.T. Sumison, L.R. Herbert
This report is the fourteenth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties to keep abreast of changing ground-water conditions.
This report, like the others (see references, p. 16), contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
This report includes individual discussions of selected major areas of ground-water withdrawal in the State for the calendar year 1976. Water-level fluctuations, however, are described for the period spring 1976 to spring 1977. Much of the data used in this report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1976, Cooperative Investigations Report 15
C.T. Sumison, W.N. Jibson, E.L. Bolke, R.W. Mower, L.R. Herbert, R.M. Cordova, V.L. Jensen, M.D. ReMillard, G.W. Sandberg, L.J. Bjorklund
This report is the thirteenth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties to keep abreast of changing ground-water conditions.
This report, like the others (see references, p. 16), contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
This report includes individual discussions of selected major areas of ground-water withdrawal in the State for the calendar year 1975. Water-level fluctuations, however, are described for the period spring 1975 to spring 1976. Much of the data used in this report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1975, Report
James H. Eychaner, W.N. Jibson, E.L. Bolke, R.W. Mower, L.R. Herbert, R.M. Cordova, V.L. Jensen, M.D. ReMillard, G.W. Sandberg, C.T. Sumison, L.J. Bjorklund
This report is the twelfth in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties such as legislators, administrators, and planners to keep abreast of changing ground-water conditions.
This report, like the others (see references, p. 16), contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
The report includes individual discussions of the most important areas of ground-water withdrawal in the State for the calendar year 1974. Water-level fluctuations, however, are described for the period spring 1974 to spring 1975. Many of the data used in the report were collected by the U.S. Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1974, Cooperative Investigations Report 13
Jerry C. Stephens, L.J. Bjorklund, E.L. Bolke, R.W. Mower, L.R. Herbert, R.M. Cordova, R.G. Butler, G.W. Sandberg, C.T. Sumison
This report is the eleventh in a series of annual reports that describe ground-water conditions in Utah. Reports in this series, prepared cooperatively by the U.S. Geological Survey and the Utah Division of Water Resources, provide data to enable interested parties such as legislators, administrators, and planners to keep abreast of changing ground-water conditions.
This report, like the others (see references, p. 18), contains information on well construction, ground-water withdrawals, water-level changes, and related changes in precipitation and streamflow. Supplementary data such as graphs showing chemical quality of water and maps showing water-table configuration are included in reports of this series only for those years or areas for which applicable data are available and are important to a discussion of changing ground-water conditions.
The report includes individual discussions of the most important areas of ground-water withdrawal in the State for the calendar year 1973. Water-level fluctuations, however, are described for the period spring 1973 to spring 1974. Many of the data used in the report were collected by the Geological Survey in cooperation with the Division of Water Rights, Utah Department of Natural Resources.
Released January 01, 2017 00:00 EST
1962, Report, Thirty-third biennial report of the State Engineer to the governor of Utah: 1960-1962
U.S. Geological Survey
The Geological Survey is authorized by Congress to cooperate with the States and other local governmental units in water-resources investigations on a 50-50 financial basis. Principal cooperation for Utah is through the office of the Utah State Engineer. Other State offices, such as the State Road Commission, Water and Power Board, Fish and Game Department, and Oil and Gas Conservation Commission have assisted financially. Counties, cities, education institutions, and water users’ organizations also have cooperated for many years. The need for water information applies to all levels of government. It is, therefore, advantageous for the Federal Government, State governments, and other political subdivisions to share in the expense to the extent possible consistent with their common interests and responsibilities. The formal cooperative program in Utah began in 1909, and has been continuous since that date.
Released January 01, 2017 00:00 EST
1946, Utah State Engineer Biennial Report 25
H.E. Thomas
Ground-water investigations in Utah by the Geological Survey of the U.S. Department of the Interior have been in progress since 1935, in cooperation with the Utah State Engineer. This cooperative work includes (1) determination of the fluctuations of water level in most of the developed ground-water areas in the state, based upon measurements which are tabulated and published annually by the Geological Survey; and (2) detailed investigations of specific ground-water areas to determine source, movement, disposal, quantity and quality of the ground water, and to show the relation of present development to the maximum economic development of which those areas are capable. Such detailed investigations have been completed during the past decade for areas in Iron, Millard, Salt Lake, Tooele, and Weber Counties, and are referred to in discussion subsequently. Similar investigations are now in progress in other areas in Davis, Iron, and Weber Counties.
Released January 01, 2017 00:00 EST
1942, Utah State Engineer Biennial Report 23-5
P.E. Dennis
Systematic underground-water investigations have been in progress in the State of Utah since 1935 by the Federal Geological Survey in cooperation with the state engineer. The general plan and outline of these investigations, together with a summary of results accomplished to June 30, 1940, are given in the Twentieth, Twenty-first, and Twenty-second biennial reports of the state engineer to the governor of Utah. The investigations include two important phases: (1) A determination of the fluctuations of water levels and artesian pressures in most of the underground-water areas in the state, based on periodic measurements with steel tapes and on charts of automatic water-state recorders and pressure recorders, and (2) detailed investigations of individual underground-water areas to determine the source, movement, disposal, quantity, and quality of underground water, and to show the relation of present development to the maximum economic development of those areas. The aim of the investigation is to determine and make available factual data as to underground-water conditions in the different areas of the state so that they may serve to guide the state engineer in an equitable adjudication of underground-water resources.
Released January 01, 2017 00:00 EST
1938, Utah State Engineer Biennial Report 21-9
A.B. Purton
Investigations for the surface-water resources of the State have been continued during the biennium under the standard form of co-operative agreement between the U.S. Geological Survey and the State of Utah through their respective agents. The nature, extent, and value of these co-operative investigations are discussed in the State Engineer’s Twentieth Biennial Report (pp. 51-58, incl.).
Released January 01, 2017 00:00 EST
1936, Utah State Engineer Biennial Report 20-8
G.H. Taylor, H.E. Thomas
During the past few years of drouth the importance of ground-water supplies has become more fully appreciated. During this time, because of subnormal replenishment of the ground-water reservoirs and the increased withdrawals from wells, the ground-water levels have declined in most developed areas in the State, a condition which has made the well owners acutely aware that ground water is not inexhaustible. Numerous cases of contention between well owners resulted in increased demands for adequate regulation of the appropriation and use of ground water. Realizing that more information concerning the ground water of the State was imperative, not only to administer the ground-water regulations but to prepare for the conservation and replenishment of existing supplies and development of new supplies, the State Legislature enacted, during its 1935 session, Senate Bill 206, which authorized the State Engineer to make an investigation of the ground water of the State. To provide for the expenses of the investigation, the bill allotted /$10,000 to the State Engineer, this sum to be matched by a State or Federal organization, and the investigation to be carried out co-operatively during the biennium beginning July 1, 1935. A co-operative agreement between the State Engineer and the United States Geological Survey was made on July 1, 1935.
Released January 01, 2017 00:00 EST
1936, Utah State Engineer Biennial Report 20-6
A.B. Purton
Stream gaging is primarily the work of collecting basic data relating to the surface-water supplies of the State. These records are used as the basis for all developments involving the use of water.
Released January 01, 2017 00:00 EST
1934, Utah State Engineer Biennial Report 19-Appendix 4
A.B. Purton
Stream measurement work under the usual co-operative agreement between the U.S. Geological Survey and the State Engineer continued during the biennium for the purpose of determining the water resources of the State. This work in Utah is part of the general plan for a systematic determination of the water resources of the United States begun by the Geological Survey in 1888. Records of stream flow on a few rivers in the West were taken as part of special studies on irrigation, in which connection gaging stations were established on the Bear, Weber, Provo, and Sevier rivers. The Bear River station at Collinston has been maintained continuously since that date.
Released January 01, 2017 00:00 EST
1932, Utah State Engineer Biennial Report 18-8
A.B. Purton
General stream measurement work for the purpose of determining the water resources of the state has been continued during the biennium by the United States Geological Survey under the usual cooperative agreements with the State Engineer.
This work in Utah is a part of the general plan for the systematic determination of the water resources of the United States begun by the geological Survey in 1888. For the past 25 years the scope of these investigations has been extended far beyond what would have been possible under the Federal appropriation alone by reason of state appropriations for cooperation. At present thirty-nine of the states are cooperating in the stream measurement work under agreements that provide for equal expenditures by the state and federal governments.
Released January 01, 2017 00:00 EST
1924, Utah State Engineer Biennial Report 14-8
A.B. Purton
Cooperative stream measurement work under an agreement essentially the same as that outlined in previous reports has been continued during the past two years by the United States Geological Survey. Details of the conditions during previous years can be found in the respective reports of the State Engineers.
Released January 01, 2017 00:00 EST
1922, Utah State Engineer Biennial Report 13-9
A.B. Purton
Systematic stream measurement work was probably first undertaken in Utah when the United States Geological Survey in 1888 began collecting records of flow of certain streams in the West in connection with special studies relating to irrigation in the arid sections. Since 1895 Congress has made small appropriations “for gaging the streams and determining the water supply of the United States.” These appropriations have permitted of federal allotments in each State only sufficient to carry on a limited amount of investigation and in recent years many private and State organizations have co-operated wither by furnishing data or by making appropriations to assist in collecting data. This co-operation has more than doubled the extent of the work carried out by the Surface Water division of the Geological Survey.
Released January 01, 2017 00:00 EST
1920, Utah State Engineer Biennial Report 12-3
A.B. Purton
The work of collecting stream flow data in Utah during the past two years has been continued under co-operative agreement between the State Engineer and the United States Geological Survey. Details of this agreement have been fully outlines in the previous reports of the State Engineer.
Released January 01, 2017 00:00 EST
1899, Report, Nineteenth Annual Report of the United States Geological Survey to the Secretary of the Interior 1897 - 1898: Part III - Economic Geology (Annual Report 19, Part III)
George Warren Tower Jr., George Otis Smith
The field work upon which this report is based was begun in July, 1897, and continued without interruption until December of the same year. The area studied is approximately 15 miles square and contains 234 square miles. The topographic maps, which are two in number, were prepared under the direction of Mr. R. U. Goode, Mr. S. S. Gannett doing the triangulation and Messrs. Marshall and Griswold the topography in the fall of 1896 and summer of 1897. The mapping is done on two scales; the larger area, approximately 15 miles square, is mapped on a scale of 1: 62,500. This map is designed to form a part of the Geologic Atlas of the United States. The other map represents the portion of the larger area in which the majority of the mines are located. It is on a scale of 1: 9,600, and covers an area of 12 square miles. The work has been greatly facilitated through the assistance rendered by the mining men of the district, among whom special thanks are due to Messrs. G. H. Robinson, W. J. Craig, W. M. Nesbit, and C. H. Blanchard. The chemical work on the ores and country rocks from the district has been done in the laboratory of the Survey by Messrs. H. N. Stokes and George Steiger, and the determination of the fossils collected is to be credited to Mr. G. H. Girty, also of the Geological Survey. In the field work the authors have cooperated constantly on every phase of the varied problems. The same is true for the office work, except that the stratigraphic and economic problems have been the especial studies of Mr. Tower, while the petrologic and remaining problems have been the special studies of Mr. Smith. In pursuance of this system of work the introduction has been written conjointly, Chapter II of Part I and all of Part II have been written by Mr. Tower, and Chapters I and III to VII of Part I by Mr. Smith.
Released January 01, 2017 00:00 EST
1896, Report, Sixteenth Annual Report of the United States Geological Survey to the Secretary of the Interior, 1894-1895: Part II - Papers of an economic character (Annual Report 16, Part II)
Frederick Haynes Newell
Questions as to the best methods of utilization and disposal of the vacant public lands have been of great prominence ever since the birth of the Republic, and the inauguration of a wise and judicious system of land laws that has been deemed one of the noteworthy achievements of the early part of the century. Many questions, however, are still far from being finally settled; for with the rapid changes incident to the growth of the nation, the settlement of the Mississippi Valley, and the construction of many transcontinental lines of communication leading to the highly cultivated and thickly populated lands of the Pacific Coast, new conditions have arisen to which former precedents and customs are no longer applicable.
While the well-watered lands stretching from the Ohio to the Missouri were open to settlement, the problems were mainly those of administration; but now that the humid lands are disposed of, and pioneers are pressing forward to every part of the vast interior region where water and not land is the first item of value, it becomes necessary to modify the treatment of the public lands and to introduce better methods. Such necessary improvements, or the introduction of systems leading to greater prosperity, must depend to a large extent upon the possession by the general public of broad yet accurate knowledge of the chief characteristics of the remaining public domain. This knowledge can be obtained only by a thorough scientific examination and an impartial statement of the facts as ascertained by disinterested observers.
Released January 01, 2017 00:00 EST
1896, Report, Sixteenth Annual Report of the United States Geological Survey to the Secretary of the Interior, 1894-1895: Part II - Papers of an economic character (Annual Report 16, Part II)
Josiah Edward Spurr, S.F. Emmons
From the base of the Wasatch Mountains on the east to that of the Sierra Nevada on the west stretches an arid region known to the early geographers as the Great American Desert, but more recently and accurately called the Great Basin, for the reason that it has no external drainage to the ocean. Geological investigation has shown that this region was once occupied by two large and distinct fresh-water seas, which have gradually disappeared by evaporation under the influence of slowly changing climatic conditions, until at the present day they are represented by relatively small saline lakes at the eastern and western extremities of the region, respectively.
Released January 01, 2017 00:00 EST
1894, Annual Report 14
A.C. Peale
Aside from the geological interest attached to the subject of mineral waters the facts that within the limits of the United States there are between 8,000 and 10,000 mineral springs, and that the waters from nearly 300 are annually placed upon the market to the extent of over 21,000,000 gallons, at a valuation of nearly \$5,000,000, show plainly that the subject is also one of considerable economic importance. That this importance is an increasing one is evident when a comparison of these figures is made with the figures for 1883, the first year they were compiled. The production then was 7,529,423 gallons, with a valuation of \$1,119,603, and the total number of springs known to be utilized for commercial purposes was only 189.
Released January 01, 2017 00:00 EST
None, Utah State Engineer Biennial Report 23-6
Ralf R. Woolley
As early as 1888 the United States Geological Survey began measuring the discharge of the principal rivers of the Western States, with a view to making a continuous inventory of this resource and its utilization for the greatest public good. Until 1905 this work was done in cooperation with the State through the state engineer’s office. Stream-flow records are fundamental to the distribution of water and the adjudication of water rights – two of the principal duties of the state engineer – and with the continually increasing use of streams, both large and small, the need for more and more stream-flow records is obviously imperative.
Released December 30, 2016 20:00 EST
2016, Scientific Investigations Report 2016-5171
Donald J. Bills, Jamie P. Macy
The U.S. Geological Survey, in cooperation with the Department of Interior Federal Indian Water Rights Negotiation Team, the Department of Justice, and the Hualapai Tribe, developed a study to determine the estimated groundwater in storage in the Truxton aquifer on the Hualapai Reservation in northwestern Arizona. This study is part of a water-rights negotiation by the Hualapai Tribe, the Department of the Interior, and the Department of Justice. The physical characteristics of the Truxton aquifer have not been very well characterized in the past. In particular, the depth to impermeable bedrock, thickness of the basin, and its groundwater storage capacity are known in only a few locations where water wells have penetrated to bedrock. Increasing water demands on the Truxton aquifer by both tribal and nontribal water users have led to concern about the long-term sustainability of this water resource. The Hualapai Tribe currently projects an increase of their water needs from about 300 acre-feet (acre-ft) per year to about 780 acre-ft per year by 2050 to support the community of Peach Springs, Arizona, and the southern part of the reservation. This study aims to quantitatively develop better knowledge of aquifer characteristics, including aquifer storage and capacity, using (1) surface resistivity data collected along transects; (2) analysis of existing geologic, borehole, precipitation, water use, and water-level data; and (3) estimated recharge.
Results of the surface resistivity surveys indicate that the depth to bedrock along the survey lines varies from less than 100 feet (ft) to over 1,300 ft. This is consistent with the erosional character of the Truxton basin; deep paleochannels characterize the deeper parts of the basin. Borehole data from wells projected into the resistivity profiles verify the geophysical survey results. The estimated average saturated thickness of the Truxton aquifer on the Hualapai Reservation is about 300 ft, based on both resistivity results and the depth to water in wells. The saturated thickness might be much thicker in parts of the Truxton aquifer where paleochannels are incised into the bedrock underlying the basin fill sediments. The estimated groundwater storage of the Truxton aquifer on the Hualapai Reservation ranges from 620,000 to 940,000 acre-ft and does not include groundwater storage in the aquifer outside the Hualapai Reservation boundary. The results compare well with studies done on alluvial basin aquifers in areas adjacent to this study. The part of the Truxton aquifer on the Hualapai Reservation represents about 20 percent of the entire aquifer. Changing aquifer conditions off reservation are expected to be similar to changes on the reservation and to affect aquifer conditions both on and off the reservation.
Released December 30, 2016 00:00 EST
2016, Journal of Coastal Research (Special Issue 76) 75-89
Jeffrey J. Danielson, Sandra Poppenga, John C. Brock, Gayla A. Evans, Dean Tyler, Dean B. Gesch, Cindy Thatcher, John Barras
During the coming decades, coastlines will respond to widely predicted sea-level rise, storm surge, and coastalinundation flooding from disastrous events. Because physical processes in coastal environments are controlled by the geomorphology of over-the-land topography and underwater bathymetry, many applications of geospatial data in coastal environments require detailed knowledge of the near-shore topography and bathymetry. In this paper, an updated methodology used by the U.S. Geological Survey Coastal National Elevation Database (CoNED) Applications Project is presented for developing coastal topobathymetric elevation models (TBDEMs) from multiple topographic data sources with adjacent intertidal topobathymetric and offshore bathymetric sources to generate
seamlessly integrated TBDEMs. This repeatable, updatable, and logically consistent methodology assimilates topographic data (land elevation) and bathymetry (water depth) into a seamless coastal elevation model. Within the overarching framework, vertical datum transformations are standardized in a workflow that interweaves spatially consistent interpolation (gridding) techniques with a land/water boundary mask delineation approach. Output gridded raster TBDEMs are stacked into a file storage system of mosaic datasets within an Esri ArcGIS geodatabase for
efficient updating while maintaining current and updated spatially referenced metadata. Topobathymetric data provide a required seamless elevation product for several science application studies, such as shoreline delineation, coastal inundation mapping, sediment-transport, sea-level rise, storm surge models, and tsunami impact assessment. These detailed coastal elevation data are critical to depict regions prone to climate change impacts and are essential to planners and managers responsible for mitigating the associated risks and costs to both human communities and ecosystems. The CoNED methodology approach has been used to construct integrated TBDEM models in Mobile Bay, the northern Gulf of Mexico, San Francisco Bay, the Hurricane Sandy region, and southern California.
Released December 30, 2016 00:00 EST
2016, American Journal of Climate Change (5) 526-557
Eric D. Swain, J. Hal Davis
The application of Global Climate Model (GCM) output to a hydrologic model allows for comparisons between simulated recent and future conditions and provides insight into the dynamics of hydrology as it may be affected by climate change. A previously developed numerical model of the Suwannee River Basin, Florida, USA, was modified and calibrated to represent transient conditions. A simulation of recent conditions was developed for the 372-month period 1970-2000 and was compared with a simulation of future conditions for a similar-length period 2039-2069, which uses downscaled GCM data. The MODFLOW groundwater-simulation code was used in both of these simulations, and two different MODFLOW boundary condition “packages” (River and Streamflow-Routing Packages) were used to represent interactions between surface-water and groundwater features.
The hydrologic fluxes between the atmosphere and landscape for the simulation of future conditions were developed from dynamically downscaled precipitation and evapotranspiration (ET) data generated by the Community Climate System Model (CCSM). The downscaled precipitation data were interpolated for the Suwannee River model grid, and the downscaled ET data were used to develop potential ET and were interpolated to the grid. The fu¬ture period has higher simulated rainfall (10.8 percent) and ET (4.5 percent) than the recent period.
The higher future rainfall causes simulated groundwater levels to rise in areas where they are deep and have little ET in either the recent or future case. However, in areas where groundwater levels were originally near the surface, the greater future ET causes groundwater levels to become lower despite the higher projected rainfall. The general implication is that unsaturated zone depth could be more spatially uniform in the future and vegetation that requires a range of conditions (substantially wetter or drier than aver¬age) could be detrimentally affected. This vegetation would include wetland species, especially in areas inland from the coast.
Released December 30, 2016 00:00 EST
2016, Journal of Coastal Research (Special Issue 76) 90-106
Sandra Poppenga, Bruce B. Worstell
Elevation data derived from light detection and ranging present challenges for hydrologic modeling as the elevation surface includes bridge decks and elevated road features overlaying culvert drainage structures. In reality, water is carried through these structures; however, in the elevation surface these features impede modeled overland surface flow. Thus, a hydrologically-enforced elevation surface is needed for hydrodynamic modeling. In the Delaware River Basin, hydrologic-enforcement techniques were used to modify elevations to simulate how constructed drainage structures allow overland surface flow. By calculating residuals between unfilled and filled elevation surfaces, artificially pooled depressions that formed upstream of constructed drainage structure features were defined, and elevation values were adjusted by generating transects at the location of the drainage structures. An assessment of each hydrologically-enforced drainage structure was conducted using field-surveyed culvert and bridge coordinates obtained from numerous public agencies, but it was discovered the disparate drainage structure datasets were not comprehensive enough to assess all remotely located depressions in need of hydrologic-enforcement. Alternatively, orthoimagery was interpreted to define drainage structures near each depression, and these locations were used as reference points for a quantitative hydrologic-enforcement assessment. The orthoimagery-interpreted reference points resulted in a larger corresponding sample size than the assessment between hydrologic-enforced transects and field-surveyed data. This assessment demonstrates the viability of rules-based hydrologic-enforcement that is needed to achieve hydrologic connectivity, which is valuable for hydrodynamic models in sensitive coastal regions. Hydrologic-enforced elevation data are also essential for merging with topographic/bathymetric elevation data that extend over vulnerable urbanized areas and dynamic coastal regions.
Released December 30, 2016 00:00 EST
2016, Rangelands (38) 329-335
Brandon T. Bestelmeyer, Jeb C. Williamson, Curtis J. Talbot, Greg W. Cates, Michael C. Duniway, Joel R. Brown
- State-and-transition models (STMs) are useful tools for management, but they can be difficult to use and have limited content.
- STMs created for groups of related ecological sites could simplify and improve their utility. The amount of information linked to models can be increased using tables that communicate management interpretations and important within-group variability.
- We created a new web-based information system (the Ecosystem Dynamics Interpretive Tool) to house STMs, associated tabular information, and other ecological site data and descriptors.
- Fewer, more informative, better organized, and easily accessible STMs should increase the accessibility of science information.
Released December 30, 2016 00:00 EST
2016, Rangelands (38) 342-349
Michael C. Duniway, Travis Nauman, Jamin K. Johanson, Shane Green, Mark E. Miller, Brandon T. Bestelmeyer
- Numerous ecological site descriptions in the southern Utah portion of the Colorado Plateau can be difficult to navigate, so we held a workshop aimed at adding value and functionality to the current ecological site system.
- We created new groups of ecological sites and drafted state-and-transition models for these new groups.
- We were able to distill the current large number of ecological sites in the study area (ca. 150) into eight ecological site groups that capture important variability in ecosystem dynamics.
- Several inventory and monitoring programs and landscape scale planning actions will likely benefit from more generalized ecological site group concepts.
Released December 30, 2016 00:00 EST
2016, Ecosphere (7)
Patrick B. Shafroth, Laura G Perry, Chanoane A Rose, Jeffrey H Braatne
Understanding how dams affect the shifting habitat mosaic of river bottomlands is key for protecting the many ecological functions and related goods and services that riparian forests provide and for informing approaches to riparian ecosystem restoration. We examined the downstream effects of two large dams on patterns of forest composition, structure, and dynamics within different geomorphic contexts and compared them to upstream reference conditions along the Elwha River, Washington, USA. Patterns of riparian vegetation in river segments downstream of the dams were driven largely by channel and bottomland geomorphic responses to a dramatically reduced sediment supply. The river segment upstream of both dams was the most geomorphically dynamic, whereas the segment between the dams was the least dynamic due to substantial channel armoring, and the segment downstream of both dams was intermediate due to some local sediment supply. These geomorphic differences were linked to altered characteristics of the shifting habitat mosaic, including older forest age structure and fewer young Populus balsamifera subsp. trichocarpa stands in the relatively static segment between the dams compared to more extensive early-successional forests (dominated by Alnus rubra and Salix spp.) and pioneer seedling recruitment upstream of the dams. Species composition of later-successional forest communities varied among river segments as well, with greater Pseudotsuga menziesii and Tsuga heterophylla abundance upstream of both dams, Acer spp. abundance between the dams, and P. balsamifera subsp. trichocarpa and Thuja plicata abundance below both dams. Riparian forest responses to the recent removal of the two dams on the Elwha River will depend largely on channel and geomorphic adjustments to the release, transport, and deposition of the large volume of sediment formerly stored in the reservoirs, together with changes in large wood dynamics.
Released December 30, 2016 00:00 EST
2016, Environmental Entomology (45) 1432-1438
Zachary Scott, Howard Ginsberg, Steven R. Alm
We identified 41 species of native bees from a total of 1,083 specimens collected at cultivated highbush blueberry plantings throughout Rhode Island in 2014 and 2015. Andrena spp., Bombus spp., and Xylocopa virginica (L.) were collected most often. Bombus griseocollis (DeGeer), B. impatiens Cresson, B. bimaculatus Cresson, B. perplexus Cresson, and Andrena vicina Smith collected the largest mean numbers of blueberry pollen tetrads. The largest mean percent blueberry pollen loads were carried by the miner bees Andrena bradleyi Viereck (91%), A. carolina Viereck (90%), and Colletes validus Cresson (87%). The largest mean total pollen grain loads were carried by B. griseocollis (549,844), B. impatiens (389,558), X. virginica (233,500), and B. bimaculatus (193,132). Xylocopa virginica was the fourth and fifth most commonly collected bee species in 2014 and 2015, respectively. They exhibit nectar robbing and females carried relatively low blueberry pollen loads (mean 33%). Overall, we found 10 species of bees to be the primary pollinators of blueberries in Rhode Island.
Released December 30, 2016 00:00 EST
2016, Report, Miscellaneous Publication 2016-01
Randy L. Eshenroder, Paul Vecsei, Owen T. Gorman, Daniel Yule, Thomas C. Pratt, Nicholas E. Mandrak, David Bunnell, Andrew M. Muir
This study of the ciscoes (Coregonus, subgenus Leucichthys) of the Great Lakes and Lake Nipigon represents a furtherance through 2015 of field research initiated by Walter Koelz in 1917 and continued by Stanford Smith in the mid-1900s—a period spanning nearly a century. Like Koelz’s study, this work contains information on taxonomy, geographical distribution, ecology, and status of species (here considered forms). Of the seven currently recognized forms (C. artedi, C. hoyi, C. johannae, C. kiyi, C. nigripinnis, C. reighardi, and C. zenithicus) described by Koelz as major in his 1929 monograph, two (C. johannae and C. reighardi) are extinct. In addition, C. alpenae, described by Koelz but subsequently synonymized with C. zenithicus, although extinct, is recognized as valid making a total of eight major forms. Six of these forms, all but C. artedi and C. hoyi, have been lost from Lake Michigan, and seven have been lost from Lake Huron, leaving in Lake Huron only C. artedi and an introgressed deepwater form that we term a hybrid swarm. C. artedi appears, like its sister form C. alpenae, to have been lost from Lake Erie. Only C. artedi remains extant in Lake Ontario, its three sister forms (C. hoyi, C. kiyi, and C. reighardi) having disappeared long ago.
Lakes Superior and Nipigon have retained their original species flocks consisting of four forms each: C. artedi, C. hoyi, and C. zenithicus in both lakes; C. kiyi in Lake Superior; and C. nigripinnis in Lake Nipigon. Morphological deviations from the morphotypes described by Koelz have been modest in contemporary samples. Overall, C. kiyi and C. artedi were the most morphologically stable forms while C. hoyi, C. nigripinnis, and C. zenithicus were the least stable. Although contemporary populations of C. artedi from Lakes Michigan and Huron are highly diverged from the morphotypes described by Koelz, the contemporary samples were of undescribed deep-bodied forms unlikely to have been sampled by Koelz because of their association with bays. Of the two intact species flocks, Lake Nipigon’s was much less stable morphologically than Lake Superior’s even though Lake Nipigon is far less disturbed. Two priorities for research are determining the role of developmental plasticity in morphological divergence, especially within C. zenithicus of Lake Superior, and the basis for morphological divergence in C. artedi.
Released December 29, 2016 16:00 EST
2016, Scientific Investigations Map 3373
V.L. McGuire
The High Plains aquifer underlies 111.8 million acres (about 175,000 square miles) in parts of eight States—Colorado, Kansas, Nebraska, New Mexico, Oklahoma, South Dakota, Texas, and Wyoming. More than 95 percent of the water withdrawn from the High Plains aquifer is used for irrigation. Water-level declines began in parts of the High Plains aquifer soon after the beginning of substantial irrigation with groundwater in the aquifer area (about 1950). The Republican River Basin is 15.9 million acres (about 25,000 square miles) and is located in northeast Colorado, northern Kansas, and southwest Nebraska. The Republican River Basin overlies the High Plains aquifer for 87 percent of the basin area. Water-level declines had begun in parts of the High Plains aquifer within the Republican River Basin by 1964. In 2002, management practices were enacted in the Middle Republican Natural Resources District in Nebraska to comply with the Republican River Compact Final Settlement. The U.S. Geological Survey, in cooperation with the Middle Republican Natural Resources District, completed a study of water-level changes in the High Plains aquifer within the Republican River Basin from 2002 to 2015 to enable the Middle Republican Natural Resources District to assess the effect of the management practices, which were specified by the Republican River Compact Final Settlement. Water-level changes determined from this study are presented in this report.
Water-level changes from 2002 to 2015 in the High Plains aquifer within the Republican River Basin, by well, ranged from a rise of 9.4 feet to a decline of 43.2 feet. The area-weighted, average water-level change from 2002 to 2015 in this part of the aquifer was a decline of 4.5 feet.
Released December 29, 2016 12:00 EST
2016, Scientific Investigations Report 2016-5165
Brian J. Klager
The Equus Beds aquifer in south-central Kansas, which is part of the High Plains aquifer, serves as a source of water for municipal and agricultural users in the area. The city of Wichita has used the Equus Beds aquifer as one of its primary water sources since the 1940s. The aquifer in and around Wichita’s well field reached historically low water levels in 1993, prompting the city to adopt new water-use and conservation strategies to ensure future water supply needs were met. Part of the plan was to initiate a managed aquifer recharge program called the Equus Beds Aquifer Storage and Recovery project. The goal of the managed aquifer recharge program is to artificially recharge the Equus Beds aquifer with treated water from the Little Arkansas River. As part of the Equus Beds Aquifer Storage and Recovery project, the city of Wichita and the U.S. Geological Survey have partnered in a long-term cooperative study to monitor and describe the quantity and quality of the water in the Equus Beds aquifer and the Little Arkansas River.
The city of Wichita, the Equus Beds Groundwater Management District No. 2, the Kansas Department of Agriculture–Division of Water Resources, and the U.S. Geological Survey collected groundwater levels in numerous wells screened in the Equus Beds aquifer in the area in and around Wichita’s well field in January 2016. The measurements were used to interpolate potentiometric surfaces for shallow and deep parts of the aquifer in the study area. These potentiometric surfaces were compared with potentiometric surfaces from previous years to estimate changes in water levels and storage volume in the study area.
Groundwater levels were generally higher in January 2016 than they were in January 2015. On average, in January 2016, groundwater levels in the shallow part of the aquifer were about 3.4 feet higher and groundwater levels in the deep part of the aquifer were about 3.8 feet higher than in January 2015. The volume of water stored in the study area decreased by about 74,000 acre-feet between predevelopment (the time period before substantial pumpage began in the 1940s) and January 2016; increased by about 121,000 acre-feet between the historic low in 1993 and January 2016; and increased by about 61,000 acre-feet between January 2015 and January 2016. About 62 percent of the storage volume lost between predevelopment and 1993 has been recovered. The increase in storage volume from January 2015 to January 2016 can probably be attributed to less pumping by the city of Wichita and irrigators, more recharge due to higher-than-average precipitation, and higher volumes of artificial recharge in 2015.
Released December 29, 2016 00:00 EST
2016, Geotechnique (66) 175-187
Richard M. Iverson, David L. George
Some landslides move slowly or intermittently downslope, but others liquefy during the early stages of motion, leading to runaway acceleration and high-speed runout across low-relief terrain. Mechanisms responsible for this disparate behaviour are represented in a two-phase, depth-integrated, landslide dynamics model that melds principles from soil mechanics, granular mechanics and fluid mechanics. The model assumes that gradually increasing pore-water pressure causes slope failure to nucleate at the weakest point on a basal slip surface in a statically balanced mass. Failure then spreads to adjacent regions as a result of momentum exchange. Liquefaction is contingent on pore-pressure feedback that depends on the initial soil state. The importance of this feedback is illustrated by using the model to study the dynamics of a disastrous landslide that occurred near Oso, Washington, USA, on 22 March 2014. Alternative simulations of the event reveal the pronounced effects of a landslide mobility bifurcation that occurs if the initial void ratio of water-saturated soil equals the lithostatic, critical-state void ratio. They also show that the tendency for bifurcation increases as the soil permeability decreases. The bifurcation implies that it can be difficult to discriminate conditions that favour slow landsliding from those that favour liquefaction and long runout.
Released December 29, 2016 00:00 EST
2016, Journal of Geophysical Research F: Earth Surface (121) 2238-2242
Richard M. Iverson
Results from a highly idealized, 2-D computational model indicate that dynamic normal-stress rarefactions might cause friction reduction in long-runout landslides, but the physical relevance of the idealized dynamics has not been confirmed by experimental tests. More importantly, the model results provide no evidence that refutes alternative hypotheses about friction reduction mechanisms. One alternative hypothesis, which is strongly supported by field evidence, experimental data, and the predictions of a well-constrained computational model, involves development of high pore fluid pressures in deforming landslide material or overridden bed material. However, no scientific basis exists for concluding that a universal mechanism is responsible for friction reduction in all long-runout landslides.
Released December 29, 2016 00:00 EST
2016, Acta Geotechnica (11) 1465-1468
Richard M. Iverson, David L. George
A paper recently published by Bartelt and Buser (hereafter identified as “the authors”) aims to clarify relationships between granular dilatancy and dispersive pressure and to question the effective stress principle and its application to shallow granular avalanches (Bartelt and Buser in Act Geotech 11:549–557, 2). The paper also criticizes our own recent work, which utilizes the concepts of evolving dilatancy and effective stress to model the initiation and dynamics of water-saturated landslides and debris flows. Here we first explain why we largely agree with the authors’ views of dilatancy and dispersive pressure as they apply to depth-integrated granular avalanche models, and why we disagree with their views of effective stress and pore-fluid pressure. We conclude by explaining why the authors’ characterization of our recently developed D-Claw model is inaccurate.
Released December 29, 2016 00:00 EST
2016, Journal of Geophysical Research F: Earth Surface (121) 2333-2357
Richard M. Iverson, David L. George, Matthew Logan
Runup of debris flows against obstacles in their paths is a complex process that involves profound flow deceleration and redirection. We investigate the dynamics and predictability of runup by comparing results from large-scale laboratory experiments, four simple analytical models, and a depth-integrated numerical model (D-Claw). The experiments and numerical simulations reveal the important influence of unsteady, multidimensional flow on runup, and the analytical models highlight key aspects of the underlying physics. Runup against a vertical barrier normal to the flow path is dominated by rapid development of a shock, or jump in flow height, associated with abrupt deceleration of the flow front. By contrast, runup on sloping obstacles is initially dominated by a smooth flux of mass and momentum from the flow body to the flow front, which precedes shock development and commonly increases the runup height. D-Claw simulations that account for the emergence of shocks show that predicted runup heights vary systematically with the adverse slope angle and also with the Froude number and degree of liquefaction (or effective basal friction) of incoming flows. They additionally clarify the strengths and limitations of simplified analytical models. Numerical simulations based on a priori knowledge of the evolving dynamics of incoming flows yield quite accurate runup predictions. Less predictive accuracy is attained in ab initio simulations that compute runup based solely on knowledge of static debris properties in a distant debris flow source area. Nevertheless, the paucity of inputs required in ab initio simulations enhances their prospective value in runup forecasting.
Released December 29, 2016 00:00 EST
2016, Global Change Biology
Lara M. Kueppers, Erin Conlisk, Cristina Castanha, Andrew B. Moyes, Matthew Germino, Perry de Valpine, Margaret S. Torn, Jeffry B. Mitton
Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower sensitivity of limber pine to warming indicates a potential for this species to become more important in subalpine forest communities in the coming centuries.
Released December 29, 2016 00:00 EST
2016, Biological Conservation
Aram J.K. Calhoun, David M. Mushet, Kathleen P. Bell, Dani Boix, James A. Fitzsimons, Francis Isselin-Nondedeu
Frequent drying of ponded water, and support of unique, highly specialized assemblages of often rare species, characterize temporary wetlands, such as vernal pools, gilgais, and prairie potholes. As small aquatic features embedded in a terrestrial landscape, temporary wetlands enhance biodiversity and provide aesthetic, biogeochemical, and hydrologic functions. Challenges to conserving temporary wetlands include the need to: (1) integrate freshwater and terrestrial biodiversity priorities; (2) conserve entire ‘pondscapes’ defined by connections to other aquatic and terrestrial systems; (3) maintain natural heterogeneity in environmental gradients across and within wetlands, especially gradients in hydroperiod; (4) address economic impact on landowners and developers; (5) act without complete inventories of these wetlands; and (6) work within limited or non-existent regulatory protections. Because temporary wetlands function as integral landscape components, not singly as isolated entities, their cumulative loss is ecologically detrimental yet not currently part of the conservation calculus. We highlight approaches that use strategies for conserving temporary wetlands in increasingly human-dominated landscapes that integrate top-down management and bottom-up collaborative approaches. Diverse conservation activities (including education, inventory, protection, sustainable management, and restoration) that reduce landowner and manager costs while achieving desired ecological objectives will have the greatest probability of success in meeting conservation goals.
Released December 29, 2016 00:00 EST
2016, Ecology of Freshwater Fish
Madeleine Eckmann, Jason Dunham, Edward J. Connor, Carmen A. Welch
Many species living in deeper lentic ecosystems exhibit daily movements that cycle through the water column, generally referred to as diel vertical migration (DVM). In this study, we applied bioenergetics modelling to evaluate growth as a hypothesis to explain DVM by bull trout (Salvelinus confluentus) in a thermally stratified reservoir (Ross Lake, WA, USA) during the peak of thermal stratification in July and August. Bioenergetics model parameters were derived from observed vertical distributions of temperature, prey and bull trout. Field sampling confirmed that bull trout prey almost exclusively on recently introduced redside shiner (Richardsonius balteatus). Model predictions revealed that deeper (>25 m) DVMs commonly exhibited by bull trout during peak thermal stratification cannot be explained by maximising growth. Survival, another common explanation for DVM, may have influenced bull trout depth use, but observations suggest there may be additional drivers of DVM. We propose these deeper summertime excursions may be partly explained by an alternative hypothesis: the importance of colder water for gametogenesis. In Ross Lake, reliance of bull trout on warm water prey (redside shiner) for consumption and growth poses a potential trade-off with the need for colder water for gametogenesis.
Released December 28, 2016 00:00 EST
2017, Water Research (110) 252-261
Lori A. Sprague, Gretchen P. Oelsner, Denise M. Argue
Combining water-quality data from multiple sources can help counterbalance diminishing resources for stream monitoring in the United States and lead to important regional and national insights that would not otherwise be possible. Individual monitoring organizations understand their own data very well, but issues can arise when their data are combined with data from other organizations that have used different methods for reporting the same common metadata elements. Such use of multi-source data is termed “secondary use”—the use of data beyond the original intent determined by the organization that collected the data. In this study, we surveyed more than 25 million nutrient records collected by 488 organizations in the United States since 1899 to identify major inconsistencies in metadata elements that limit the secondary use of multi-source data. Nearly 14.5 million of these records had missing or ambiguous information for one or more key metadata elements, including (in decreasing order of records affected) sample fraction, chemical form, parameter name, units of measurement, precise numerical value, and remark codes. As a result, metadata harmonization to make secondary use of these multi-source data will be time consuming, expensive, and inexact. Different data users may make different assumptions about the same ambiguous data, potentially resulting in different conclusions about important environmental issues. The value of these ambiguous data is estimated at \$US12 billion, a substantial collective investment by water-resource organizations in the United States. By comparison, the value of unambiguous data is estimated at \$US8.2 billion. The ambiguous data could be preserved for uses beyond the original intent by developing and implementing standardized metadata practices for future and legacy water-quality data throughout the United States.
Released December 28, 2016 00:00 EST
2016, Ecology (97) 3555-3556
Ralph Grundel
No abstract available.
Released December 27, 2016 17:00 EST
2016, Professional Paper 1827
Robert Dolan, Harry Lins, Jodi Jones Smith
The Outer Banks of North Carolina are excellent examples of the nearly 300 barrier islands rimming the Atlantic and Gulf coasts of the United States. These low, sandy islands are among the most dynamic natural landscapes occupied by man. Beach sands move offshore, onshore, and along the shore in the direction of the prevailing longshore currents. In this way, sandy coasts continuously adjust to different tide, wave, and current conditions and to rising sea level that causes the islands to migrate landward.
Despite such changes, barrier islands are of considerable environmental importance. The Outer Banks are home to diverse natural ecosystems that are adapted to the harsh coastal environment. Native species tend to be robust and many are specifically adapted to withstand salt spray, periodic saltwater flooding, and the islands’ well-drained sandy soil. The Outer Banks provide an important stopover for birds on the Atlantic flyway, and many species inhabit the islands year round. In addition, Outer Banks beaches provide an important nesting habitat for five endangered or threatened sea turtle species.
European explorers discovered North Carolina’s barrier islands in the 16th century, although the islands were not permanently settled until the middle 17th century. By the early 19th century, shipbuilding and lumber industries were among the most successful, until forest resources were depleted. Commercial fishing eventually followed, and it expanded considerably after the Civil War. By the Great Depression, however, little industry existed on the Outer Banks. In response to the effects of a severe hurricane in 1933, the National Park Service and the Civilian Conservation Corps proposed a massive sand-fixation program to stabilize the moving sand and prevent storm waves from sweeping across the entire width of some sections of the islands. Between 1933 and 1940, this program constructed sand fencing on 185 kilometers (115 miles) of beach and planted grass seedlings, trees, and shrubs.
In 1937, Congress authorized the Cape Hatteras National Seashore, which was established in 1953. The national seashore preserved one of the world’s best examples of a barrier island environment, and minimized the effect of erosion that was becoming a serious problem. In 1966, Congress authorized the Cape Lookout National Seashore to ensure that Core and Shackleford Banks would not undergo major development and could be preserved in their natural state.
The rate of population growth along the Outer Banks in recent decades has been among the highest in North Carolina. More important, however, has been the growth in vacationers—in 2008, more than a quarter of a million visitors during a typical week. Municipalities now need to provide services to a transient population as much as six times as large as their permanent resident population.
Although human activities have dominated the landscape changes observed on the Outer Banks for the past century or two, these changes must be understood in the context of the prevailing atmospheric, oceanic, and geologic processes that have governed the form and function of these islands for thousands of years. It is these natural processes that imbue the Outer Banks with their unique and dichotomous qualities of tranquility and tumult. In the presence of human occupation, it is these same processes that make the islands one of the highest natural-hazard risk zones along the Eastern Seaboard of the United States.
Released December 27, 2016 16:00 EST
2016, Fact Sheet 2016-3084
Gail Moede Rogall, Emily W. Lankau
White-nose syndrome is a devastating wildlife disease that has killed millions of hibernating bats. This disease first appeared in New York during 2007 and has continued to spread at an alarming rate from the northeastern to the central United States and throughout eastern Canada. The disease is named for the fungus Pseudogymnoascus destructans, which often appears white when it infects the skin of the nose, ears, and wings of hibernating bats. This fact sheet provides updates on white-nose syndrome research and management efforts and highlights US Geological Survey scientists’ contributions to understanding and combating this disease.
Released December 27, 2016 10:00 EST
2016, Fact Sheet 2016-3088
Larry J. Sugarbaker, William J. Carswell, Jr.
The agriculture industry, including farmers who rely on advanced technologies, increasingly use light detection and ranging (lidar) data for crop management to enhance agricultural productivity. Annually, the combination of greater yields and reduced crop losses is estimated to increase revenue by \$2 billion for America's farmers when terrain data derived from lidar are available for croplands. Additionally, the Natural Resources Conservation Service (NRCS) estimates that the value of improved services for farmers, through its farm assistance program, would be \$79 million annually if lidar-derived digital elevation models (DEMs) are made available to the public.
The 3D Elevation Program (3DEP) of the U.S. Geological Survey provides the programmatic infrastructure to generate and supply superior, lidar-derived terrain data to the agriculture industry, which would allow farms to refine agricultural practices and produce crops more efficiently. By providing data to users, 3DEP reduces users’ costs and risks, allowing them to concentrate on mission objectives. 3DEP includes (1) data acquisition partnerships that leverage funding, (2) contracts with experienced private mapping firms, (3) technical expertise, lidar data standards and specifications, and (4) most importantly, public access to high-quality 3D elevation data.
Released December 27, 2016 00:00 EST
2016, Ecological Complexity
Frank Pennekamp, Matthew Adamson, Owen L Petchey, Jean-Christophe Poggiale, Maira Aguiar, Bob W. Kooi, Daniel B. Botkin, Don DeAngelis
The pervasive influence of human induced global environmental change affects biodiversity across the globe, and there is great uncertainty as to how the biosphere will react on short and longer time scales. To adapt to what the future holds and to manage the impacts of global change, scientists need to predict the expected effects with some confidence and communicate these predictions to policy makers. However, recent reviews found that we currently lack a clear understanding of how predictable ecology is, with views seeing it as mostly unpredictable to potentially predictable, at least over short time frames. However, in applied, ecology-related fields predictions are more commonly formulated and reported, as well as evaluated in hindsight, potentially allowing one to define baselines of predictive proficiency in these fields. We searched the literature for representative case studies in these fields and collected information about modeling approaches, target variables of prediction, predictive proficiency achieved, as well as the availability of data to parameterize predictive models. We find that some fields such as epidemiology achieve high predictive proficiency, but even in the more predictive fields proficiency is evaluated in different ways. Both phenomenological and mechanistic approaches are used in most fields, but differences are often small, with no clear superiority of one approach over the other. Data availability is limiting in most fields, with long-term studies being rare and detailed data for parameterizing mechanistic models being in short supply. We suggest that ecologists adopt a more rigorous approach to report and assess predictive proficiency, and embrace the challenges of real world decision making to strengthen the practice of prediction in ecology.
Released December 27, 2016 00:00 EST
2016, BioScience
Susan Walls, Lianne C. Ball, William J. Barichivich, Kenneth Dodd, Kevin M Enge, Thomas A. Gorman, Katherine O'Donnell, John G Palis, Raymond D. Semlitsch
The US Endangered Species Act of 1973 (ESA) affords many potential benefits to species threatened with extinction. However, most at-risk amphibians—one of the most imperiled vertebrate groups—remain unlisted under the provisions of the ESA, and many impediments to recovery exist for those species that have been listed. Of the 35 US amphibian species and distinct population segments (“taxa”) listed under the ESA, 40% currently lack a final (completed) recovery plan, 28.6% lack designated critical habitat, and 8.6% lack both. For taxa that have recovery plans, the time between their listing and the development of those plans was from 2 to 29 years, and the time between their listing and the designation of critical habitat ranged from 0 to 14 years. The underlying causes of such delays in protection are complex and constitute obstacles to recovery of imperiled species. We outline a series of strategic actions by which these challenges may be overcome.
Released December 27, 2016 00:00 EST
2016, Icarus 3-21
Kathryn M. Stack, Christopher Edwards, J. P. Grotzinger, S. Gupta, D. Sumner, Lauren Edgar, A. Fraeman, S. Jacob, L. LeDeit, K.W. Lewis, M.S. Rice, D. Rubin, F. Calef, K. Edgett, R.M.E. Williams, K.H. Williford
This study provides the first systematic comparison of orbital facies maps with detailed ground-based geology observations from the Mars Science Laboratory (MSL) Curiosity rover to examine the validity of geologic interpretations derived from orbital image data. Orbital facies maps were constructed for the Darwin, Cooperstown, and Kimberley waypoints visited by the Curiosity rover using High Resolution Imaging Science Experiment (HiRISE) images. These maps, which represent the most detailed orbital analysis of these areas to date, were compared with rover image-based geologic maps and stratigraphic columns derived from Curiosity’s Mast Camera (Mastcam) and Mars Hand Lens Imager (MAHLI). Results show that bedrock outcrops can generally be distinguished from unconsolidated surficial deposits in high-resolution orbital images and that orbital facies mapping can be used to recognize geologic contacts between well-exposed bedrock units. However, process-based interpretations derived from orbital image mapping are difficult to infer without known regional context or observable paleogeomorphic indicators, and layer-cake models of stratigraphy derived from orbital maps oversimplify depositional relationships as revealed from a rover perspective. This study also shows that fine-scale orbital image-based mapping of current and future Mars landing sites is essential for optimizing the efficiency and science return of rover surface operations.
Released December 27, 2016 00:00 EST
2016, Methods in Ecology and Evolution (7) 1529-1547
Matthew Clement
1.Recently, estimators have been developed to estimate occupancy probabilities when false-positive detections occur during presence-absence surveys. Some of these estimators combine different types of survey data to improve estimates of occupancy. With these estimators, there is a tradeoff between the number of sample units surveyed, and the number and type of surveys at each sample unit. Guidance on efficient design of studies when false positives occur is unavailable.
2.For a range of scenarios, I identified survey designs that minimized the mean square error of the estimate of occupancy. I considered an approach that uses one survey method and two observation states and an approach that uses two survey methods. For each approach, I used numerical methods to identify optimal survey designs when model assumptions were met and parameter values were correctly anticipated, when parameter values were not correctly anticipated, and when the assumption of no unmodelled detection heterogeneity was violated.
3.Under the approach with two observation states, false positive detections increased the number of recommended surveys, relative to standard occupancy models. If parameter values could not be anticipated, pessimism about detection probabilities avoided poor designs. Detection heterogeneity could require more or fewer repeat surveys, depending on parameter values. If model assumptions were met, the approach with two survey methods was inefficient. However, with poor anticipation of parameter values, with detection heterogeneity, or with removal sampling schemes, combining two survey methods could improve estimates of occupancy.
4.Ignoring false positives can yield biased parameter estimates, yet false positives greatly complicate the design of occupancy studies. Specific guidance for major types of false-positive occupancy models, and for two assumption violations common in field data, can conserve survey resources. This guidance can be used to design efficient monitoring programs and studies of species occurrence, species distribution, or habitat selection, when false positives occur during surveys.
