Analytical and Computational Tools
- HIV Database
- Hypermut/Analysis and Detection of APOBEC-induced Hypermutation
Documents the nature and context of nucleotide substitutions in a sequence population relative to a reference sequence. - RIP/Recombinant Identification Program
Identifies recombination in query sequence(s) by calculating similarity to a background alignment in a sliding window.
- Hypermut/Analysis and Detection of APOBEC-induced Hypermutation
- Immunology Database and Analysis Portal (ImmPORT)
- Influenza Research Database (IRD)
- Identify Point Mutations
This tool will scan the specified proteins that are from type A viruses with the specified subtype found in the IRD database for the presence of the amino acid you specify at the coordinate (location) indicated. - Analyze Sequence Variation (SNP)
Sequences are grouped by segment number, flu type, subtype, and host and are aligned.
- Identify Point Mutations
Databases and Data Sets
- Database of Mutations Causing Human Hyper Ige Syndrome (STAT3base)
- EuPathDB Search
- HIV Databases
- ADRA/Antiviral Drug Resistance Analysis Tool
ADRA can be used to help researchers rapidly find studies related to a mutation of interest. - HIV-1 Resistance Mutation Database
- ADRA/Antiviral Drug Resistance Analysis Tool
- Influenza Research Database Sequence Feature Variant Types
Provides data on specific characteristic regions and/or sub-regions termed "Sequence Features" defined for all influenza virus proteins. - SNP Query
Visualization and Modeling Tools
- ImmPORT/GBrowse Genome Browser
- Recombinant HIV-1 Drawing Tool
This tool maps recombinant breakpoint data for HIV-1 onto a map of the HXB2 genome. - Single Nucleotide Polymorphism (SNP) Explorer
Analysis and visualization of hyper-igm/cvid re-sequencing microarray data.
Contact Information
For more information on Bioinformatics Mutation, Recombination, and Single Nucleotide Polymorphism, email:
Bioinformatics and Computational Sciences Branch
Content last reviewed on January 24, 2013