Vertebrates
Mammals
Primates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Callithrix jacchus | white-tufted-ear marmoset | Annotation Release 102 |
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Cercocebus atys | sooty mangabey | Annotation Release 100 |
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Chlorocebus sabaeus | green monkey | Annotation Release 100 |
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Colobus angolensis palliatus | Annotation Release 100 |
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Gorilla gorilla | western gorilla | Annotation Release 100 |
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Homo sapiens | human | Annotation Release 108 |
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Annotation Release 105 |
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Macaca fascicularis | crab-eating macaque | Annotation Release 100 |
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Macaca mulatta | rhesus macaque | Build 1.2 |
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Macaca nemestrina | pig-tailed macaque | Annotation Release 100 |
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Mandrillus leucophaeus | drill | Annotation Release 100 |
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Nomascus leucogenys | northern white-cheeked gibbon | Annotation Release 101 |
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Build 1.1 |
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Otolemur garnettii | small-eared galago | Annotation Release 100 |
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Pan paniscus | pygmy chimpanzee | Annotation Release 101 |
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Pan troglodytes | chimpanzee | Annotation Release 103 |
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Annotation Release 102 |
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Papio anubis | olive baboon | Annotation Release 101 |
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Annotation Release 100 |
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Pongo abelii | Sumatran orangutan | Annotation Release 102 |
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Rhinopithecus roxellana | golden snub-nosed monkey | Annotation Release 100 |
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Saimiri boliviensis | Bolivian squirrel monkey | Annotation Release 101 |
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Tarsius syrichta | Philippine tarsier | Annotation Release 100 |
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Rodents
Scientific name | Common name | Build | Tools |
---|---|---|---|
Cavia porcellus | domestic guinea pig | Annotation Release 101 |
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Chinchilla lanigera | long-tailed chinchilla | Annotation Release 100 |
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Cricetulus griseus | Chinese hamster | Annotation Release 101 |
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Fukomys damarensis | Damara mole-rat | Annotation Release 100 |
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Heterocephalus glaber | naked mole-rat | Annotation Release 100 |
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Ictidomys tridecemlineatus | thirteen-lined ground squirrel | Annotation Release 100 |
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Jaculus jaculus | lesser Egyptian jerboa | Annotation Release 100 |
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Mesocricetus auratus | golden hamster | Annotation Release 100 |
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Microtus ochrogaster | prairie vole | Annotation Release 100 |
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Mus musculus | laboratory mouse | Annotation Release 105 |
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Build 37.2 |
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Nannospalax galili | Upper Galilee mountains blind mole rat | Annotation Release 100 |
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Octodon degus | degu | Annotation Release 100 |
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Peromyscus maniculatus bairdii | prairie deer mouse | Annotation Release 100 |
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Rattus norvegicus | rat | Annotation Release 105 |
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Annotation Release 104 |
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Monotremes
Scientific name | Common name | Build | Tools |
---|---|---|---|
Ornithorhynchus anatinus | platypus | Annotation Release 102 |
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Marsupials
Scientific name | Common name | Build | Tools |
---|---|---|---|
Monodelphis domestica | opossum | Annotation Release 102 |
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Sarcophilus harrisii | Tasmanian devil | Annotation Release 100 |
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Other Mammals
Scientific name | Common name | Build | Tools |
---|---|---|---|
Ailuropoda melanoleuca | giant panda | Annotation Release 101 |
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Balaenoptera acutorostrata scammoni | Annotation Release 100 |
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Bison bison bison | Annotation Release 100 |
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Bos mutus | wild yak | Annotation Release 100 |
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Bos taurus | cattle | Annotation Release 104 |
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5.2 |
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Bubalus bubalis | river buffalo | Annotation Release 100 |
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Camelus bactrianus | Bactrian camel | Annotation Release 100 |
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Camelus dromedarius | Arabian camel | Annotation Release 100 |
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Camelus ferus | Wild Bactrian camel | Annotation Release 100 |
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Canis lupus familiaris | dog | Annotation Release 103 |
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Build 2.2 |
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Capra hircus | goat | Annotation Release 100 |
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Ceratotherium simum simum | southern white rhinoceros | Annotation Release 100 |
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Chrysochloris asiatica | Cape golden mole | Annotation Release 100 |
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Condylura cristata | star-nosed mole | Annotation Release 100 |
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Dasypus novemcinctus | nine-banded armadillo | Annotation Release 100 |
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Echinops telfairi | small Madagascar hedgehog | Annotation Release 100 |
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Elephantulus edwardii | Cape elephant shrew | Annotation Release 100 |
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Eptesicus fuscus | big brown bat | Annotation Release 100 |
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Equus caballus | horse | Annotation Release 101 |
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Equus przewalskii | Przewalski's horse | Annotation Release 100 |
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Erinaceus europaeus | western European hedgehog | Annotation Release 100 |
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Felis catus | cat | Annotation Release 102 |
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Galeopterus variegatus | Sunda flying lemur | Annotation Release 100 |
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Leptonychotes weddellii | Weddell seal | Annotation Release 100 |
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Lipotes vexillifer | Yangtze River dolphin | Annotation Release 100 |
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Loxodonta africana | African savanna elephant | Annotation Release 101 |
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Mustela putorius furo | ferret | Annotation Release 100 |
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Myotis brandtii | Brandt's bat | Annotation Release 100 |
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Myotis davidii | Annotation Release 100 |
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Myotis lucifugus | little brown bat | Annotation Release 100 |
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Ochotona princeps | American pika | Annotation Release 100 |
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Odobenus rosmarus divergens | Pacific walrus | Annotation Release 100 |
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Orcinus orca | killer whale | Annotation Release 100 |
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Orycteropus afer afer | Annotation Release 100 |
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Oryctolagus cuniculus | rabbit | Annotation Release 101 |
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Ovis aries | sheep | Annotation Release 101 |
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Panthera tigris altaica | Amur tiger | Annotation Release 100 |
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Pantholops hodgsonii | chiru | Annotation Release 100 |
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Physeter catodon | sperm whale | Annotation Release 100 |
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Pteropus alecto | black flying fox | Annotation Release 100 |
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Pteropus vampyrus | large flying fox | Annotation Release 100 |
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Sorex araneus | European shrew | Annotation Release 100 |
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Sus scrofa | pig | Annotation Release 104 |
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Sscrofa9.2 |
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Trichechus manatus latirostris | Florida manatee | Annotation Release 100 |
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Tupaia chinensis | Chinese tree shrew | Annotation Release 100 |
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Tursiops truncatus | bottlenosed dolphin | Annotation Release 100 |
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Ursus maritimus | polar bear | Annotation Release 100 |
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Vicugna pacos | alpaca | Annotation Release 100 |
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Birds
Scientific name | Common name | Build | Tools |
---|---|---|---|
Acanthisitta chloris | rifleman | Annotation Release 100 |
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Anas platyrhynchos | mallard | Annotation Release 100 |
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Apaloderma vittatum | bar-tailed trogon | Annotation Release 100 |
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Aptenodytes forsteri | emperor penguin | Annotation Release 100 |
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Aquila chrysaetos canadensis | Annotation Release 100 |
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Balearica regulorum gibbericeps | East African grey crowned-crane | Annotation Release 100 |
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Buceros rhinoceros silvestris | Annotation Release 100 |
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Calypte anna | Anna's hummingbird | Annotation Release 100 |
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Caprimulgus carolinensis | chuck-will's-widow | Annotation Release 100 |
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Cariama cristata | red-legged seriema | Annotation Release 100 |
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Chaetura pelagica | chimney swift | Annotation Release 100 |
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Charadrius vociferus | killdeer | Annotation Release 100 |
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Chlamydotis macqueenii | Macqueen's bustard | Annotation Release 100 |
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Colius striatus | speckled mousebird | Annotation Release 100 |
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Columba livia | rock pigeon | Annotation Release 100 |
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Corvus brachyrhynchos | American crow | Annotation Release 100 |
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Corvus cornix cornix | Annotation Release 100 |
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Cuculus canorus | common cuckoo | Annotation Release 100 |
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Egretta garzetta | little egret | Annotation Release 100 |
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Eurypyga helias | sunbittern | Annotation Release 100 |
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Falco cherrug | Saker falcon | Annotation Release 100 |
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Falco peregrinus | peregrine falcon | Annotation Release 100 |
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Ficedula albicollis | collared flycatcher | Annotation Release 100 |
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Fulmarus glacialis | northern fulmar | Annotation Release 100 |
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Gallus gallus | chicken | Annotation Release 102 |
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Build 2.1 |
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Gavia stellata | red-throated loon | Annotation Release 100 |
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Geospiza fortis | medium ground-finch | Annotation Release 100 |
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Haliaeetus albicilla | white-tailed eagle | Annotation Release 100 |
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Haliaeetus leucocephalus | bald eagle | Annotation Release 100 |
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Leptosomus discolor | cuckoo roller | Annotation Release 100 |
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Manacus vitellinus | golden-collared manakin | Annotation Release 100 |
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Meleagris gallopavo | turkey | Annotation Release 101 |
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Melopsittacus undulatus | budgerigar | Annotation Release 100 |
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Merops nubicus | carmine bee-eater | Annotation Release 100 |
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Mesitornis unicolor | brown roatelo | Annotation Release 100 |
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Nestor notabilis | Kea | Annotation Release 100 |
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Nipponia nippon | crested ibis | Annotation Release 100 |
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Opisthocomus hoazin | hoatzin | Annotation Release 100 |
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Pelecanus crispus | Dalmatian pelican | Annotation Release 100 |
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Phaethon lepturus | white-tailed tropicbird | Annotation Release 100 |
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Phalacrocorax carbo | great cormorant | Annotation Release 100 |
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Picoides pubescens | downy woodpecker | Annotation Release 100 |
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Pseudopodoces humilis | Tibetan ground-tit | Annotation Release 100 |
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Pterocles gutturalis | yellow-throated sandgrouse | Annotation Release 100 |
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Pygoscelis adeliae | Adelie penguin | Annotation Release 100 |
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Serinus canaria | common canary | Annotation Release 100 |
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Struthio camelus australis | Annotation Release 100 |
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Taeniopygia guttata | zebra finch | Annotation Release 101 |
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Tauraco erythrolophus | red-crested turaco | Annotation Release 100 |
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Tinamus guttatus | white-throated tinamou | Annotation Release 100 |
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Tyto alba | barn owl | Annotation Release 100 |
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Zonotrichia albicollis | white-throated sparrow | Annotation Release 100 |
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Other Vertebrates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Alligator mississippiensis | American alligator | Annotation Release 100 |
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Alligator sinensis | Chinese alligator | Annotation Release 100 |
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Anolis carolinensis | green anole | Annotation Release 101 |
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Astyanax mexicanus | Mexican tetra | Annotation Release 100 |
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Callorhinchus milii | elephant shark | Annotation Release 100 |
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Chelonia mydas | green sea turtle | Annotation Release 100 |
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Chrysemys picta | painted turtle | Annotation Release 101 |
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Annotation Release 100 |
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Cynoglossus semilaevis | tongue sole | Annotation Release 100 |
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Danio rerio | zebrafish | Annotation Release 104 |
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Annotation Release 103 |
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Esox lucius | northern pike | Annotation Release 100 |
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Haplochromis burtoni | Burton's mouthbrooder | Annotation Release 100 |
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Larimichthys crocea | large yellow croaker | Annotation Release 100 |
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Latimeria chalumnae | coelacanth | Annotation Release 100 |
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Lepisosteus oculatus | spotted gar | Annotation Release 100 |
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Maylandia zebra | zebra mbuna | Annotation Release 100 |
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Neolamprologus brichardi | lyretail cichlid | Annotation Release 100 |
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Notothenia coriiceps | black rockcod | Annotation Release 100 |
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Oreochromis niloticus | Nile tilapia | Annotation Release 101 |
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Oryzias latipes | Japanese medaka | Annotation Release 101 |
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Pelodiscus sinensis | Chinese soft-shelled turtle | Annotation Release 100 |
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Poecilia formosa | Amazon molly | Annotation Release 100 |
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Poecilia reticulata | guppy | Annotation Release 100 |
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Pundamilia nyererei | Annotation Release 100 |
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Python bivittatus | Burmese python | Annotation Release 100 |
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Stegastes partitus | bicolor damselfish | Annotation Release 100 |
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Takifugu rubripes | Fugu | Annotation Release 101 |
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Xenopus tropicalis | tropical clawed frog | Annotation Release 101 |
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Build 1.1 |
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Xiphophorus maculatus | southern platyfish | Annotation Release 100 |
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Invertebrates
Insects
Scientific name | Common name | Build | Tools |
---|---|---|---|
Acromyrmex echinatior | Panamanian leafcutter ant | Annotation Release 100 |
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Acyrthosiphon pisum | pea aphid | Annotation Release 101 |
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Build 1.1 |
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Aedes aegypti | yellow fever mosquito | Aedes_aegypti_1.1 |
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Anopheles gambiae | African malaria mosquito | Annotation Release 101 |
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Apis dorsata | giant honeybee | Annotation Release 100 |
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Apis florea | little honeybee | Annotation Release 100 |
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Apis mellifera | honey bee | Annotation Release 102 |
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Amel_4.0 |
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Athalia rosae | coleseed sawfly | Annotation Release 100 |
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Atta cephalotes | Annotation Release 100 |
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Bactrocera cucurbitae | melon fly | Annotation Release 100 |
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Bactrocera dorsalis | oriental fruit fly | Annotation Release 100 |
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Bombus impatiens | common eastern bumble bee | Annotation Release 101 |
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Bombus terrestris | buff-tailed bumblebee | Annotation Release 101 |
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Bombyx mori | domestic silkworm | Annotation Release 100 |
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Camponotus floridanus | Florida carpenter ant | Annotation Release 100 |
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Cerapachys biroi | clonal raider ant | Annotation Release 100 |
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Ceratitis capitata | Mediterranean fruit fly | Annotation Release 101 |
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Ceratosolen solmsi marchali | Annotation Release 100 |
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Diaphorina citri | Asian citrus psyllid | Annotation Release 100 |
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Drosophila melanogaster | fruit fly | Release 5.30 |
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Drosophila pseudoobscura | Release 2.3 |
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Drosophila virilis | Release 1.2 |
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Fopius arisanus | Annotation Release 100 |
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Harpegnathos saltator | Jerdon's jumping ant | Annotation Release 100 |
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Linepithema humile | Argentine ant | Annotation Release 100 |
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Megachile rotundata | alfalfa leafcutting bee | Annotation Release 101 |
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Microplitis demolitor | Annotation Release 100 |
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Musca domestica | house fly | Annotation Release 101 |
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Nasonia vitripennis | jewel wasp | Annotation Release 101 |
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Build 2.1 |
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Orussus abietinus | Annotation Release 100 |
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Plutella xylostella | diamondback moth | Annotation Release 100 |
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Pogonomyrmex barbatus | red harvester ant | Annotation Release 100 |
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Solenopsis invicta | red fire ant | Annotation Release 100 |
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Tribolium castaneum | red flour beetle | Annotation Release 102 |
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Vollenhovia emeryi | Annotation Release 100 |
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Nematode
Scientific name | Common name | Build | Tools |
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Caenorhabditis briggsae | Build 1.1 |
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Caenorhabditis elegans | nematode | WS195 |
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WS190 |
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Echinoderms
Scientific name | Common name | Build | Tools |
---|---|---|---|
Strongylocentrotus purpuratus | purple sea urchin | Annotation Release 101 |
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Build 2.1 |
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Cnidaria
Scientific name | Common name | Build | Tools |
---|---|---|---|
Hydra vulgaris | Annotation Release 101 |
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Build 1.1 |
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Other Invertebrates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Amphimedon queenslandica | Annotation Release 101 |
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Aplysia californica | California sea hare | Annotation Release 100 |
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Ciona intestinalis | vase tunicate | Annotation Release 102 |
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Annotation Release 101 |
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Crassostrea gigas | Pacific oyster | Annotation Release 100 |
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Metaseiulus occidentalis | western predatory mite | Annotation Release 100 |
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Saccoglossus kowalevskii | Annotation Release 101 |
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Protozoa
Scientific name | Common name | Build | Tools |
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Babesia bovis | Build 1.1 |
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Cryptosporidium hominis | Build 1.1 |
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Cryptosporidium parvum | Build 1.1 |
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Dictyostelium discoideum | social amoeba | Build 2.1 |
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Eimeria maxima |
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Eimeria tenella |
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Giardia intestinalis | Build 1.1 |
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Leishmania braziliensis | Build 1.1 |
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Leishmania infantum | Build 1.1 |
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Leishmania major | Build 1.1 |
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Paramecium tetraurelia | Build 1.1 |
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Plasmodium berghei | Build 1.1 |
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Plasmodium chabaudi | Build 1.1 |
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Plasmodium falciparum | Build 1.1 |
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Plasmodium yoelii | Build 1.1 |
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Tetrahymena thermophila | Build 1.1 |
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Theileria parva | Build 1.1 |
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Trichomonas vaginalis | Build 1.1 |
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Trypanosoma brucei | Build 1.1 |
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Plants
Flowering Plants
Monocots
Scientific name | Common name | Build | Tools |
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Aegilops tauschii |
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Aegilops umbellulata |
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Allium cepa | onion |
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Asparagus officinalis | asparagus |
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Avena atlantica x Avena hirtula |
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Avena strigosa x Avena wiestii |
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Brachypodium distachyon | stiff brome | Annotation Release 101 |
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Cenchrus americanus | pearl millet |
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Cocos nucifera | coconut palm |
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Elaeis guineensis | African oil palm | Annotation Release 100 |
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Eleusine coracana | finger millet |
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Eragrostis tef | tef |
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Festuca pratensis | meadow ryegrass |
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Hordeum bulbosum |
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Hordeum vulgare | barley |
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Lolium perenne | ryegrass |
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Musa acuminata | dwarf banana | Annotation Release 100 |
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Oryza brachyantha | malo sina | Annotation Release 100 |
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Oryza latifolia |
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Oryza sativa | rice | RAP Build 3 |
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Phoenix dactylifera | date palm | Annotation Release 100 |
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Secale cereale | rye |
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Setaria italica | foxtail millet | Annotation Release 100 |
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Sorghum bicolor | sorghum | Sorbi1 |
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Triticum aestivum | wheat |
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Triticum turgidum | durum wheat |
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Zea mays | maize | Annotation Release 100 |
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Eudicots
Scientific name | Common name | Build | Tools |
---|---|---|---|
Acacia mangium |
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Antirrhinum majus | snapdragon |
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Antirrhinum majus x Antirrhinum molle |
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Apium graveolens |
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Arabidopsis lyrata | lyrate rockcress | Arabidopsis lyrata v1.0 |
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Arabidopsis thaliana | thale cress | TAIR10 |
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Arachis duranensis x Arachis stenosperma |
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Arachis stenosperma x Arachis cardenasii |
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Beta vulgaris subsp. vulgaris | Beta vulgaris | Annotation Release 100 |
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Betula pendula | European white birch |
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Boechera stricta |
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Brassica juncea | brown mustard |
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Brassica napus | rapeseed |
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Brassica nigra | black mustard |
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Brassica oleracea |
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Brassica rapa | field mustard | Annotation Release 100 |
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Camelina sativa | false flax | Annotation Release 100 |
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Camellia sinensis | black tea |
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Capsicum annuum | pepper |
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Capsicum annuum x Capsicum chinense |
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Capsicum annuum x Capsicum frutescens |
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Carica papaya | papaya |
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Carya illinoinensis | pecan |
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Castanea dentata x Castanea mollissima |
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Cicer arietinum | chickpea | Annotation Release 100 |
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Citrus maxima | red-fleshed pommelo |
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Citrus sinensis | sweet orange | Annotation Release 100 |
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Coffea canephora | robusta coffee |
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Corylus avellana | European hazelnut |
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Cucumis melo | muskmelon | Annotation Release 100 |
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Cucumis sativus | cucumber | Annotation Release 101 |
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Cynara cardunculus var. scolymus | globe artichoke |
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Daucus carota | carrot |
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Eucalyptus globulus | blue gum |
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Eucalyptus grandis | Annotation Release 100 |
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Eucalyptus grandis x Eucalyptus urophylla |
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Eucalyptus nitens |
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Eucalyptus urophylla |
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Fragaria vesca | wild strawberry | Annotation Release 101 |
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Fragaria vesca x Fragaria nubicola |
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Glycine max | soybean | Annotation Release 101 |
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Build 1.1 |
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Helianthus annuus | common sunflower |
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Hevea brasiliensis | siringa |
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Jatropha curcas | Annotation Release 100 |
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Lablab purpureus | natoba |
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Lens culinaris | lentil |
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Limnanthes alba | white meadowfoam |
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Lotus japonicus | birdsfoot deervetch |
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Lupinus angustifolius | narrow-leaved blue lupine |
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Malus domestica | apple | Annotation Release 100 |
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Manihot esculenta | cassava |
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Medicago sativa | alfalfa |
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Medicago truncatula | barrel medic | Build 1.1 |
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Nelumbo nucifera | sacred lotus | Annotation Release 100 |
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Nicotiana acuminata | acuminate tobacco |
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Nicotiana sylvestris | wood tobacco | Annotation Release 100 |
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Nicotiana tabacum | common tobacco |
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Nicotiana tomentosiformis | Annotation Release 100 |
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Phaseolus vulgaris | kidney bean |
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Populus euphratica | Euphrates poplar | Annotation Release 100 |
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Populus trichocarpa | poplar | Build 2.3 |
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Prunus armeniaca | apricot |
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Prunus cerasifera | cherry plum |
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Prunus dulcis | sweet almond |
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Prunus dulcis x Prunus persica |
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Prunus mume | Japanese apricot | Annotation Release 100 |
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Prunus persica | peach |
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Prunus persica x Prunus dulcis |
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Pyrus communis | pear |
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Pyrus pyrifolia | sha li |
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Pyrus x bretschneideri | Chinese white pear | Annotation Release 100 |
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Quercus robur | oak |
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Rosa chinensis | China rose |
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Rosa hybrid cultivar |
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Rosa lucieae | memorial rose |
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Rosa multiflora | Japanese rose |
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Rubus idaeus | red raspberry |
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Salix viminalis | osier |
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Sesamum indicum | sesame | Annotation Release 100 |
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Silene vulgaris | bladder campion |
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Solanum lycopersicoides | nightshade |
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Solanum lycopersicum | tomato | Annotation Release 101 |
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Annotation Release 100 |
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Solanum melongena | eggplant |
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Solanum peruvianum | Peruvian tomato |
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Solanum tuberosum | potato | Annotation Release 100 |
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Tarenaya hassleriana | spider flower | Annotation Release 100 |
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Theobroma cacao | cocoa |
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Trifolium pratense | rotklee |
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Turnera subulata x Turnera krapovickasii |
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Vigna angularis | adzuki bean |
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Vigna radiata | mungbean |
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Vigna umbellata | rice-bean |
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Vigna unguiculata | cowpea |
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Vitis vinifera | wine grape | Annotation Release 101 |
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IGGP build 1 |
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Scientific name | Common name | Build | Tools |
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Amborella trichopoda | Annotation Release 100 |
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Conifers
Cypress
Firs
Pines
Scientific name | Common name | Build | Tools |
---|---|---|---|
Pinus elliottii | slash pine |
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Pinus pinaster | maritime pine |
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Pinus sylvestris | Scots pine |
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Pinus taeda | loblolly pine |
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Pinus thunbergii | Japanese black pine |
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Spruce
Algae
Green Algae
Scientific name | Common name | Build | Tools |
---|---|---|---|
Chlamydomonas reinhardtii | Build 1.1 |
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Ostreococcus 'lucimarinus' | Build 2.0 |
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Red Algae
Moss
Scientific name | Common name | Build | Tools |
---|---|---|---|
Physcomitrella patens | Build 1.1 |
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Fungi![Open Group Search page Open Group Search page](https://webarchive.library.unt.edu/web/20170124202743im_/https://www.ncbi.nlm.nih.gov/projects/mapview/mvhome/images/search.png)
Scientific name | Common name | Build | Tools |
---|---|---|---|
Aspergillus clavatus | Build 1.1 |
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Aspergillus fumigatus | Annotation Release 100 |
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Aspergillus niger | Build 1.1 |
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Cryptococcus neoformans | Build 2.1 |
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Debaryomyces hansenii | Build 1.1 |
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Encephalitozoon cuniculi | Build 1.1 |
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Eremothecium gossypii | Build 3.1 |
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Fusarium graminearum | Build 1.2 |
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Kluyveromyces lactis | Build 1.1 |
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Magnaporthe oryzae | rice blast fungus | Build 3.1 |
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Neurospora crassa | Build 2.1 |
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Saccharomyces cerevisiae | baker's yeast | Build 3.1 |
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Build 2.1 |
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Scheffersomyces stipitis | Build 1.1 |
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Schizosaccharomyces pombe | fission yeast | Annotation Release 101 |
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Build 1.1 |
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Ustilago maydis | Build 1.1 |
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Yarrowia lipolytica | Build 1.1 |
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[Candida] glabrata | Build 1.1 |
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